ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13o23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187760.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1575 Score = 67.9 bits (34), Expect = 1e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 158 gccttccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 ||||||||||||| |||||| |||||||| || ||||||||||| |||||||| Sbjct: 1403 gccttccagacggcgctgttgcacttgaatccggagccgaacgcgatctgcca 1351
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 67.9 bits (34), Expect = 1e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 158 gccttccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 ||||||||||||| |||||| |||||||| || ||||||||||| |||||||| Sbjct: 3388437 gccttccagacggcgctgttgcacttgaatccggagccgaacgcgatctgcca 3388385 Score = 50.1 bits (25), Expect = 0.003 Identities = 33/36 (91%) Strand = Plus / Plus Query: 163 ccagacggngctgttacacttgaaccccgagccgaa 198 |||||| | |||||| |||||||||||||||||||| Sbjct: 7656824 ccagaccgcgctgttgcacttgaaccccgagccgaa 7656859 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 15048342 gctgttgcacttgaaccccgacccgaacg 15048314 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Plus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 15032684 gctgttgcacttgaaccccgacccgaacg 15032712 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 14989447 gctgttgcacttgaaccccgacccgaacg 14989419 Score = 42.1 bits (21), Expect = 0.73 Identities = 29/32 (90%) Strand = Plus / Minus Query: 167 acggngctgttacacttgaaccccgagccgaa 198 |||| |||||| ||||||||||| |||||||| Sbjct: 4253136 acggcgctgttgcacttgaacccggagccgaa 4253105 Score = 40.1 bits (20), Expect = 2.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 160 cttccagacggngctgttacacttgaa 186 ||||||||||| |||||| |||||||| Sbjct: 6271471 cttccagacggcgctgttgcacttgaa 6271497
>emb|AJ292770.1|ZMA292770 Zea mays mRNA for putative fatty acid longase (fae2 gene) Length = 2018 Score = 67.9 bits (34), Expect = 1e-08 Identities = 126/157 (80%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 63 caaccttggacaccttgggaacctccaccgggaatgtgtcgatctcgtncatccaggggt 122 ||||||| || | ||| ||||| ||||||||||| |||| ||||| | |||||||||| Sbjct: 1681 caacctttgaaatctttggaacatccaccgggaagttgtcaatctcatccatccaggggc 1622 Query: 123 tgttctgctccttcgctgggttcactgacctcagtgccttccagacggngctgttacact 182 | |||| |||| || |||||||| | || |||||||||||||||| |||||| |||| Sbjct: 1621 tcttct---ccttggccgggttcaccgtccggagtgccttccagacggcgctgttgcact 1565 Query: 183 tgaaccccgagccgaacgctatctgccatatnctgtc 219 |||| || || || || || |||||||| || ||||| Sbjct: 1564 tgaatccagaaccaaatgcgatctgccagatcctgtc 1528
>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete sequence Length = 177327 Score = 67.9 bits (34), Expect = 1e-08 Identities = 48/53 (90%) Strand = Plus / Plus Query: 158 gccttccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 ||||||||||||| |||||| |||||||| || ||||||||||| |||||||| Sbjct: 40777 gccttccagacggcgctgttgcacttgaatccggagccgaacgcgatctgcca 40829
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 67.9 bits (34), Expect = 1e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 158 gccttccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 ||||||||||||| |||||| |||||||| || ||||||||||| |||||||| Sbjct: 3388548 gccttccagacggcgctgttgcacttgaatccggagccgaacgcgatctgcca 3388496 Score = 50.1 bits (25), Expect = 0.003 Identities = 33/36 (91%) Strand = Plus / Plus Query: 163 ccagacggngctgttacacttgaaccccgagccgaa 198 |||||| | |||||| |||||||||||||||||||| Sbjct: 7654659 ccagaccgcgctgttgcacttgaaccccgagccgaa 7654694 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 15042876 gctgttgcacttgaaccccgacccgaacg 15042848 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Plus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 15027218 gctgttgcacttgaaccccgacccgaacg 15027246 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 14983981 gctgttgcacttgaaccccgacccgaacg 14983953 Score = 42.1 bits (21), Expect = 0.73 Identities = 29/32 (90%) Strand = Plus / Minus Query: 167 acggngctgttacacttgaaccccgagccgaa 198 |||| |||||| ||||||||||| |||||||| Sbjct: 4253251 acggcgctgttgcacttgaacccggagccgaa 4253220 Score = 40.1 bits (20), Expect = 2.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 160 cttccagacggngctgttacacttgaa 186 ||||||||||| |||||| |||||||| Sbjct: 6270684 cttccagacggcgctgttgcacttgaa 6270710
>dbj|AK064127.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E01, full insert sequence Length = 1408 Score = 67.9 bits (34), Expect = 1e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 158 gccttccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 ||||||||||||| |||||| |||||||| || ||||||||||| |||||||| Sbjct: 971 gccttccagacggcgctgttgcacttgaatccggagccgaacgcgatctgcca 919
>gb|AY109713.2| Zea mays CL1191_1 mRNA sequence Length = 1949 Score = 67.9 bits (34), Expect = 1e-08 Identities = 126/157 (80%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 63 caaccttggacaccttgggaacctccaccgggaatgtgtcgatctcgtncatccaggggt 122 ||||||| || | ||| ||||| ||||||||||| |||| ||||| | |||||||||| Sbjct: 1649 caacctttgaaatctttggaacatccaccgggaagttgtcaatctcatccatccaggggc 1590 Query: 123 tgttctgctccttcgctgggttcactgacctcagtgccttccagacggngctgttacact 182 | |||| |||| || |||||||| | || |||||||||||||||| |||||| |||| Sbjct: 1589 tcttct---ccttggccgggttcaccgtccggagtgccttccagacggcgctgttgcact 1533 Query: 183 tgaaccccgagccgaacgctatctgccatatnctgtc 219 |||| || || || || || |||||||| || ||||| Sbjct: 1532 tgaatccagaaccaaatgcgatctgccagatcctgtc 1496
>gb|AY110123.1| Zea mays CL29782_1 mRNA sequence Length = 932 Score = 63.9 bits (32), Expect = 2e-07 Identities = 49/55 (89%) Strand = Plus / Plus Query: 158 gccttccagacggngctgttacacttgaaccccgagccgaacgctatctgccata 212 ||||||||||||| |||||| |||||||| || |||||||| || |||||||||| Sbjct: 255 gccttccagacggcgctgttgcacttgaagccggagccgaaagcgatctgccata 309
>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1356F10, complete sequence Length = 170681 Score = 60.0 bits (30), Expect = 3e-06 Identities = 44/49 (89%) Strand = Plus / Plus Query: 162 tccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||| |||| |||||| ||||||||||| ||||||||||| |||||||| Sbjct: 138185 tccacacggcgctgttgcacttgaacccggagccgaacgcgatctgcca 138233
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 60.0 bits (30), Expect = 3e-06 Identities = 44/49 (89%) Strand = Plus / Plus Query: 162 tccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||| |||| |||||| ||||||||||| ||||||||||| |||||||| Sbjct: 21614666 tccacacggcgctgttgcacttgaacccggagccgaacgcgatctgcca 21614714
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 3e-06 Identities = 125/157 (79%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 63 caaccttggacaccttgggaacctccaccgggaatgtgtcgatctcgtncatccaggggt 122 ||||||| || | ||| ||||| || |||||||| |||| ||||| | ||||||||||| Sbjct: 23227062 caacctttgatatctttggaacttcaaccgggaagttgtcaatctcatccatccaggggt 23227003 Query: 123 tgttctgctccttcgctgggttcactgacctcagtgccttccagacggngctgttacact 182 | |||| |||||||||| ||||||| ||| ||||||||||| | |||||| |||| Sbjct: 23227002 tcttct---ccttcgctggattcactgtttgcagcgccttccagactgcgctgttgcact 23226946 Query: 183 tgaaccccgagccgaacgctatctgccatatnctgtc 219 |||| || || || || || |||||||| || ||||| Sbjct: 23226945 tgaaaccagatccaaatgcaatctgccagatcctgtc 23226909
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 60.0 bits (30), Expect = 3e-06 Identities = 125/157 (79%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 63 caaccttggacaccttgggaacctccaccgggaatgtgtcgatctcgtncatccaggggt 122 ||||||| || | ||| ||||| || |||||||| |||| ||||| | ||||||||||| Sbjct: 61824 caacctttgatatctttggaacttcaaccgggaagttgtcaatctcatccatccaggggt 61765 Query: 123 tgttctgctccttcgctgggttcactgacctcagtgccttccagacggngctgttacact 182 | |||| |||||||||| ||||||| ||| ||||||||||| | |||||| |||| Sbjct: 61764 tcttct---ccttcgctggattcactgtttgcagcgccttccagactgcgctgttgcact 61708 Query: 183 tgaaccccgagccgaacgctatctgccatatnctgtc 219 |||| || || || || || |||||||| || ||||| Sbjct: 61707 tgaaaccagatccaaatgcaatctgccagatcctgtc 61671
>dbj|AK120567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134A09, full insert sequence Length = 1536 Score = 60.0 bits (30), Expect = 3e-06 Identities = 44/49 (89%) Strand = Plus / Minus Query: 162 tccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||| |||| |||||| ||||||||||| ||||||||||| |||||||| Sbjct: 1183 tccacacggcgctgttgcacttgaacccggagccgaacgcgatctgcca 1135
>dbj|AK101377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036C04, full insert sequence Length = 2134 Score = 60.0 bits (30), Expect = 3e-06 Identities = 125/157 (79%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 63 caaccttggacaccttgggaacctccaccgggaatgtgtcgatctcgtncatccaggggt 122 ||||||| || | ||| ||||| || |||||||| |||| ||||| | ||||||||||| Sbjct: 1752 caacctttgatatctttggaacttcaaccgggaagttgtcaatctcatccatccaggggt 1693 Query: 123 tgttctgctccttcgctgggttcactgacctcagtgccttccagacggngctgttacact 182 | |||| |||||||||| ||||||| ||| ||||||||||| | |||||| |||| Sbjct: 1692 tcttct---ccttcgctggattcactgtttgcagcgccttccagactgcgctgttgcact 1636 Query: 183 tgaaccccgagccgaacgctatctgccatatnctgtc 219 |||| || || || || || |||||||| || ||||| Sbjct: 1635 tgaaaccagatccaaatgcaatctgccagatcctgtc 1599
>gb|AY108989.1| Zea mays PCO108745 mRNA sequence Length = 625 Score = 60.0 bits (30), Expect = 3e-06 Identities = 47/53 (88%) Strand = Plus / Plus Query: 158 gccttccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 ||||||||||||| |||||| |||||||| || |||||||| || |||||||| Sbjct: 395 gccttccagacggcgctgttgcacttgaagccggagccgaaggcgatctgcca 447
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 60.0 bits (30), Expect = 3e-06 Identities = 44/49 (89%) Strand = Plus / Plus Query: 162 tccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||| |||| |||||| ||||||||||| ||||||||||| |||||||| Sbjct: 21924865 tccacacggcgctgttgcacttgaacccggagccgaacgcgatctgcca 21924913
>ref|NM_196495.1| Oryza sativa (japonica cultivar-group) putative beta-ketoacyl-CoA synthase (OSJNBa0032I20.8), mRNA Length = 1572 Score = 52.0 bits (26), Expect = 8e-04 Identities = 43/49 (87%) Strand = Plus / Minus Query: 162 tccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||| |||| |||||| ||||||||||| |||||||| || |||||||| Sbjct: 1438 tccacacggcgctgttgcacttgaacccggagccgaaggcgatctgcca 1390
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 8e-04 Identities = 43/49 (87%) Strand = Plus / Plus Query: 162 tccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||| |||| |||||| ||||||||||| |||||||| || |||||||| Sbjct: 14046781 tccacacggcgctgttgcacttgaacccggagccgaaggcgatctgcca 14046829
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 52.0 bits (26), Expect = 8e-04 Identities = 43/49 (87%) Strand = Plus / Plus Query: 162 tccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||| |||| |||||| ||||||||||| |||||||| || |||||||| Sbjct: 62910 tccacacggcgctgttgcacttgaacccggagccgaaggcgatctgcca 62958
>dbj|AK073016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L14, full insert sequence Length = 1040 Score = 52.0 bits (26), Expect = 8e-04 Identities = 43/49 (87%) Strand = Plus / Minus Query: 162 tccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||| |||| |||||| ||||||||||| |||||||| || |||||||| Sbjct: 710 tccacacggcgctgttgcacttgaacccggagccgaaggcgatctgcca 662
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 8e-04 Identities = 43/49 (87%) Strand = Plus / Plus Query: 162 tccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||| |||| |||||| ||||||||||| |||||||| || |||||||| Sbjct: 14055023 tccacacggcgctgttgcacttgaacccggagccgaaggcgatctgcca 14055071
>dbj|AP004939.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17M09, TM0105, complete sequence Length = 127990 Score = 52.0 bits (26), Expect = 8e-04 Identities = 46/53 (86%) Strand = Plus / Plus Query: 158 gccttccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||||| |||| ||||||||||||||| ||||| || || || |||||||| Sbjct: 85484 gccttccacacggcgctgttacacttgaaacccgacccaaatgcgatctgcca 85536
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 50.1 bits (25), Expect = 0.003 Identities = 42/48 (87%) Strand = Plus / Plus Query: 163 ccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||||| |||||| ||||||||||| ||||||||| |||||||| Sbjct: 139376 ccagacggcgctgttgcacttgaacccgctgccgaacgcgatctgcca 139423
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 50.1 bits (25), Expect = 0.003 Identities = 33/36 (91%) Strand = Plus / Minus Query: 163 ccagacggngctgttacacttgaaccccgagccgaa 198 |||||| | |||||| |||||||||||||||||||| Sbjct: 58466 ccagaccgcgctgttgcacttgaaccccgagccgaa 58431
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.003 Identities = 42/48 (87%) Strand = Plus / Plus Query: 163 ccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||||| |||||| ||||||||||| ||||||||| |||||||| Sbjct: 28059211 ccagacggcgctgttgcacttgaacccgctgccgaacgcgatctgcca 28059258
>dbj|AK119596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D11, full insert sequence Length = 2378 Score = 50.1 bits (25), Expect = 0.003 Identities = 42/48 (87%) Strand = Plus / Minus Query: 163 ccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||||| |||||| ||||||||||| ||||||||| |||||||| Sbjct: 1699 ccagacggcgctgttgcacttgaacccgctgccgaacgcgatctgcca 1652
>dbj|AK119222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E03, full insert sequence Length = 2098 Score = 50.1 bits (25), Expect = 0.003 Identities = 33/36 (91%) Strand = Plus / Minus Query: 163 ccagacggngctgttacacttgaaccccgagccgaa 198 |||||| | |||||| |||||||||||||||||||| Sbjct: 1616 ccagaccgcgctgttgcacttgaaccccgagccgaa 1581
>dbj|AK112059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A11, full insert sequence Length = 2025 Score = 50.1 bits (25), Expect = 0.003 Identities = 33/36 (91%) Strand = Plus / Minus Query: 163 ccagacggngctgttacacttgaaccccgagccgaa 198 |||||| | |||||| |||||||||||||||||||| Sbjct: 1616 ccagaccgcgctgttgcacttgaaccccgagccgaa 1581
>dbj|AK101103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025C07, full insert sequence Length = 2356 Score = 50.1 bits (25), Expect = 0.003 Identities = 42/48 (87%) Strand = Plus / Minus Query: 163 ccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||||| |||||| ||||||||||| ||||||||| |||||||| Sbjct: 1700 ccagacggcgctgttgcacttgaacccgctgccgaacgcgatctgcca 1653
>ref|NM_128221.4| Arabidopsis thaliana acyltransferase AT2G26640 mRNA, complete cds Length = 2415 Score = 46.1 bits (23), Expect = 0.047 Identities = 35/39 (89%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||| |||||||||||||| || || ||||||||||| Sbjct: 1480 gctgttgcacttgaaccccgaaccaaaagctatctgcca 1442
>ref|NM_128222.3| Arabidopsis thaliana AKT1 (ARABIDOPSIS K TRANSPORTER 1); cyclic nucleotide binding / inward rectifier potassium channel AT2G26650 (AKT1) mRNA, complete cds Length = 3389 Score = 46.1 bits (23), Expect = 0.047 Identities = 35/39 (89%) Strand = Plus / Plus Query: 172 gctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||| |||||||||||||| || || ||||||||||| Sbjct: 3161 gctgttgcacttgaaccccgaaccaaaagctatctgcca 3199
>ref|XM_464563.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1929 Score = 46.1 bits (23), Expect = 0.047 Identities = 35/39 (89%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||| ||||||||||| || |||||||| |||||||| Sbjct: 1548 gctgttgcacttgaacccggacccgaacgcgatctgcca 1510
>gb|AC003105.3| Arabidopsis thaliana chromosome 2 clone F18A8 map B68, complete sequence Length = 95167 Score = 46.1 bits (23), Expect = 0.047 Identities = 35/39 (89%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||| |||||||||||||| || || ||||||||||| Sbjct: 1507 gctgttgcacttgaaccccgaaccaaaagctatctgcca 1469
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.047 Identities = 35/39 (89%) Strand = Plus / Plus Query: 172 gctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||| ||||||||||| || |||||||| |||||||| Sbjct: 5930679 gctgttgcacttgaacccggacccgaacgcgatctgcca 5930717
>gb|BT005692.1| Arabidopsis thaliana clone U50015 putative beta-ketoacyl-CoA synthase (At2g26640) mRNA, complete cds Length = 1561 Score = 46.1 bits (23), Expect = 0.047 Identities = 35/39 (89%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||| |||||||||||||| || || ||||||||||| Sbjct: 1422 gctgttgcacttgaaccccgaaccaaaagctatctgcca 1384
>gb|BT003854.1| Arabidopsis thaliana clone RAFL16-02-C13 (R50015) putative beta-ketoacyl-CoA synthase (At2g26640) mRNA, complete cds Length = 1840 Score = 46.1 bits (23), Expect = 0.047 Identities = 35/39 (89%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||| |||||||||||||| || || ||||||||||| Sbjct: 1482 gctgttgcacttgaaccccgaaccaaaagctatctgcca 1444
>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056C19 Length = 147739 Score = 46.1 bits (23), Expect = 0.047 Identities = 35/39 (89%) Strand = Plus / Plus Query: 172 gctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||| ||||||||||| || |||||||| |||||||| Sbjct: 108900 gctgttgcacttgaacccggacccgaacgcgatctgcca 108938
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 46.1 bits (23), Expect = 0.047 Identities = 35/39 (89%) Strand = Plus / Plus Query: 172 gctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||| ||||||||||| || |||||||| |||||||| Sbjct: 160481 gctgttgcacttgaacccggacccgaacgcgatctgcca 160519
>dbj|AK067907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127I02, full insert sequence Length = 1929 Score = 46.1 bits (23), Expect = 0.047 Identities = 35/39 (89%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||| ||||||||||| || |||||||| |||||||| Sbjct: 1548 gctgttgcacttgaacccggacccgaacgcgatctgcca 1510
>gb|AC144389.22| Medicago truncatula clone mth2-25e14, complete sequence Length = 127170 Score = 44.1 bits (22), Expect = 0.18 Identities = 45/53 (84%) Strand = Plus / Plus Query: 158 gccttccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||||| |||| |||||||||||| || ||||| || || || |||||||| Sbjct: 126398 gccttccacacggcgctgttacacttaaaacccgacccaaatgcaatctgcca 126450
>gb|AC150443.2| Medicago truncatula chromosome 7 BAC clone mth2-71o19, complete sequence Length = 132097 Score = 44.1 bits (22), Expect = 0.18 Identities = 45/53 (84%) Strand = Plus / Plus Query: 158 gccttccagacggngctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||||| |||| |||||||||||| || ||||| || || || |||||||| Sbjct: 20545 gccttccacacggcgctgttacacttaaaacccgacccaaatgcaatctgcca 20597
>gb|AF082033.1|AF082033 Hemerocallis hybrid cultivar senescence-associated protein 15 (SA15) mRNA, complete cds Length = 1929 Score = 44.1 bits (22), Expect = 0.18 Identities = 34/38 (89%) Strand = Plus / Minus Query: 173 ctgttacacttgaaccccgagccgaacgctatctgcca 210 |||||||||||||||||||| || ||| | |||||||| Sbjct: 1446 ctgttacacttgaaccccgacccaaacccaatctgcca 1409
>ref|XM_470547.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1788 Score = 42.1 bits (21), Expect = 0.73 Identities = 29/32 (90%) Strand = Plus / Minus Query: 167 acggngctgttacacttgaaccccgagccgaa 198 |||| |||||| ||||||||||| |||||||| Sbjct: 1700 acggcgctgttgcacttgaacccggagccgaa 1669
>ref|XM_470781.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1401 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 1248 gctgttgcacttgaaccccgacccgaacg 1220
>ref|XM_470771.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1464 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 1317 gctgttgcacttgaaccccgacccgaacg 1289
>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete sequence Length = 137184 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Plus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 53315 gctgttgcacttgaaccccgacccgaacg 53343 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 10078 gctgttgcacttgaaccccgacccgaacg 10050
>gb|AC006003.4| Homo sapiens PAC clone RP4-782K24 from 7, complete sequence Length = 123255 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 ctgacctcagtgccttccaga 167 ||||||||||||||||||||| Sbjct: 8094 ctgacctcagtgccttccaga 8114
>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048F08, from chromosome 3, complete sequence Length = 155790 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 122089 gctgttgcacttgaaccccgacccgaacg 122061 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Plus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 106431 gctgttgcacttgaaccccgacccgaacg 106459
>dbj|AK119228.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A08, full insert sequence Length = 1912 Score = 42.1 bits (21), Expect = 0.73 Identities = 29/32 (90%) Strand = Plus / Minus Query: 167 acggngctgttacacttgaaccccgagccgaa 198 |||| |||||| ||||||||||| |||||||| Sbjct: 1595 acggcgctgttgcacttgaacccggagccgaa 1564
>dbj|AK100798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121F20, full insert sequence Length = 662 Score = 42.1 bits (21), Expect = 0.73 Identities = 29/32 (90%) Strand = Plus / Minus Query: 167 acggngctgttacacttgaaccccgagccgaa 198 |||| |||||| ||||||||||| |||||||| Sbjct: 345 acggcgctgttgcacttgaacccggagccgaa 314
>dbj|AK099232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094M20, full insert sequence Length = 1903 Score = 42.1 bits (21), Expect = 0.73 Identities = 29/32 (90%) Strand = Plus / Minus Query: 167 acggngctgttacacttgaaccccgagccgaa 198 |||| |||||| ||||||||||| |||||||| Sbjct: 1586 acggcgctgttgcacttgaacccggagccgaa 1555
>dbj|AK071506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093M02, full insert sequence Length = 1666 Score = 42.1 bits (21), Expect = 0.73 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 gctgttacacttgaaccccgagccgaacg 200 |||||| |||||||||||||| ||||||| Sbjct: 1286 gctgttgcacttgaaccccgacccgaacg 1258
>dbj|AK061335.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B10, full insert sequence Length = 1909 Score = 42.1 bits (21), Expect = 0.73 Identities = 29/32 (90%) Strand = Plus / Minus Query: 167 acggngctgttacacttgaaccccgagccgaa 198 |||| |||||| ||||||||||| |||||||| Sbjct: 1595 acggcgctgttgcacttgaacccggagccgaa 1564
>dbj|AK060840.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D04, full insert sequence Length = 1907 Score = 42.1 bits (21), Expect = 0.73 Identities = 29/32 (90%) Strand = Plus / Minus Query: 167 acggngctgttacacttgaaccccgagccgaa 198 |||| |||||| ||||||||||| |||||||| Sbjct: 1590 acggcgctgttgcacttgaacccggagccgaa 1559
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 42.1 bits (21), Expect = 0.73 Identities = 29/32 (90%) Strand = Plus / Minus Query: 167 acggngctgttacacttgaaccccgagccgaa 198 |||| |||||| ||||||||||| |||||||| Sbjct: 81751 acggcgctgttgcacttgaacccggagccgaa 81720
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gcgcgcttcctgtttcgggt 32 |||||||||||||||||||| Sbjct: 3692347 gcgcgcttcctgtttcgggt 3692366
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gcgcgcttcctgtttcgggt 32 |||||||||||||||||||| Sbjct: 3501443 gcgcgcttcctgtttcgggt 3501462
>gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome 7, complete sequence Length = 260989 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 ccaggggttgttctgctcct 134 |||||||||||||||||||| Sbjct: 114342 ccaggggttgttctgctcct 114323
>emb|CR932957.2| Medicago truncatula chromosome 5 clone mth2-58c3, COMPLETE SEQUENCE Length = 136080 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 cacgatttgcgcgcttcctgtttc 28 ||||||||||||||||||| |||| Sbjct: 29377 cacgatttgcgcgcttcctctttc 29400
>gb|AC140006.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0090D11, complete sequence Length = 115403 Score = 40.1 bits (20), Expect = 2.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 160 cttccagacggngctgttacacttgaa 186 ||||||||||| |||||| |||||||| Sbjct: 110082 cttccagacggcgctgttgcacttgaa 110108
>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024O21, complete sequence Length = 155651 Score = 40.1 bits (20), Expect = 2.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 160 cttccagacggngctgttacacttgaa 186 ||||||||||| |||||| |||||||| Sbjct: 84679 cttccagacggcgctgttgcacttgaa 84705
>dbj|AK106150.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H08, full insert sequence Length = 1892 Score = 40.1 bits (20), Expect = 2.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 160 cttccagacggngctgttacacttgaa 186 ||||||||||| |||||| |||||||| Sbjct: 1567 cttccagacggcgctgttgcacttgaa 1541
>dbj|AK104714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H10, full insert sequence Length = 1892 Score = 40.1 bits (20), Expect = 2.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 160 cttccagacggngctgttacacttgaa 186 ||||||||||| |||||| |||||||| Sbjct: 1567 cttccagacggcgctgttgcacttgaa 1541
>dbj|AK066587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074H08, full insert sequence Length = 1966 Score = 40.1 bits (20), Expect = 2.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 160 cttccagacggngctgttacacttgaa 186 ||||||||||| |||||| |||||||| Sbjct: 1568 cttccagacggcgctgttgcacttgaa 1542
>emb|BX510657.9| Zebrafish DNA sequence from clone CH211-142K18 in linkage group 20, complete sequence Length = 163967 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 aggcaaaattattcagcaac 66 |||||||||||||||||||| Sbjct: 97366 aggcaaaattattcagcaac 97347 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,233,758 Number of Sequences: 3902068 Number of extensions: 1233758 Number of successful extensions: 74237 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73702 Number of HSP's gapped (non-prelim): 527 length of query: 225 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 203 effective length of database: 17,147,199,772 effective search space: 3480881553716 effective search space used: 3480881553716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
