ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14d19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RX_DROME (Q9W2Q1) Retinal homeobox protein Rx (DRx1) (DRx) 30 5.2
2R1_ARATH (Q9SAC6) Alpha-glucan water dikinase, chloroplast precu... 30 6.8

>RX_DROME (Q9W2Q1) Retinal homeobox protein Rx (DRx1) (DRx)|
          Length = 873

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 319 IFSSSLHS*SCNTAVHVQHVAQQSILLYWMINMGGGEELMPPRGLIKASHLFRFSDDA 146
           + +SS  + + NTA   QH+ +Q      ++  GGG   +PP+ L +  HL     DA
Sbjct: 7   VANSSSTAAANNTAATFQHIFEQ------LVQQGGGNHKLPPKQLEQLRHLLGNVRDA 58



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>R1_ARATH (Q9SAC6) Alpha-glucan water dikinase, chloroplast precursor (EC|
           2.7.9.4) (Starch-related R1 protein) (Starch excess
           protein 1)
          Length = 1399

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 292 SCNTAVHVQHVAQQSILLYWMINMGGGEELMPPRGLIKASHL 167
           S  T +HV    ++ + L+W ++  GGE L PP  ++  + L
Sbjct: 377 SGKTKIHVATDFKEPVTLHWALSQKGGEWLDPPSDILPPNSL 418


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,078,565
Number of Sequences: 219361
Number of extensions: 1980500
Number of successful extensions: 3690
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3690
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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