ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags14d19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187536.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1497 Score = 129 bits (65), Expect = 1e-26 Identities = 152/180 (84%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 500 gtatgttttagcttttcccttctctttctagcaggcccaaggcactcataaggatttgca 559 |||||||||||||| ||||||| |||||| |||| ||||| || |||| ||||| ||| Sbjct: 1487 gtatgttttagcttctcccttcgctttctcgcagctccaagacattcatgtggattagca 1428 Query: 560 tagaagtagtcttcttccttaggctgcccagcgatgacttttctttctcgtgggctggct 619 ||||||||||| |||||||| |||||||| || || | |||| |||| ||||| | ||| Sbjct: 1427 tagaagtagtcctcttcctttggctgcccggcaat-agctttccttctggtgggttcgct 1369 Query: 620 cattcggccctcatgtagctccttgacagcagtacagaattcattccatgacagctnctg 679 |||||||||||| ||||||||||| ||||||||| ||||||| | ||| ||||||| ||| Sbjct: 1368 cattcggccctcgtgtagctccttcacagcagtagagaattcgtcccaggacagctcctg 1309
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 129 bits (65), Expect = 1e-26 Identities = 152/180 (84%), Gaps = 1/180 (0%) Strand = Plus / Plus Query: 500 gtatgttttagcttttcccttctctttctagcaggcccaaggcactcataaggatttgca 559 |||||||||||||| ||||||| |||||| |||| ||||| || |||| ||||| ||| Sbjct: 11981972 gtatgttttagcttctcccttcgctttctcgcagctccaagacattcatgtggattagca 11982031 Query: 560 tagaagtagtcttcttccttaggctgcccagcgatgacttttctttctcgtgggctggct 619 ||||||||||| |||||||| |||||||| || || | |||| |||| ||||| | ||| Sbjct: 11982032 tagaagtagtcctcttcctttggctgcccggcaat-agctttccttctggtgggttcgct 11982090 Query: 620 cattcggccctcatgtagctccttgacagcagtacagaattcattccatgacagctnctg 679 |||||||||||| ||||||||||| ||||||||| ||||||| | ||| ||||||| ||| Sbjct: 11982091 cattcggccctcgtgtagctccttcacagcagtagagaattcgtcccaggacagctcctg 11982150
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 129 bits (65), Expect = 1e-26 Identities = 152/180 (84%), Gaps = 1/180 (0%) Strand = Plus / Plus Query: 500 gtatgttttagcttttcccttctctttctagcaggcccaaggcactcataaggatttgca 559 |||||||||||||| ||||||| |||||| |||| ||||| || |||| ||||| ||| Sbjct: 11978735 gtatgttttagcttctcccttcgctttctcgcagctccaagacattcatgtggattagca 11978794 Query: 560 tagaagtagtcttcttccttaggctgcccagcgatgacttttctttctcgtgggctggct 619 ||||||||||| |||||||| |||||||| || || | |||| |||| ||||| | ||| Sbjct: 11978795 tagaagtagtcctcttcctttggctgcccggcaat-agctttccttctggtgggttcgct 11978853 Query: 620 cattcggccctcatgtagctccttgacagcagtacagaattcattccatgacagctnctg 679 |||||||||||| ||||||||||| ||||||||| ||||||| | ||| ||||||| ||| Sbjct: 11978854 cattcggccctcgtgtagctccttcacagcagtagagaattcgtcccaggacagctcctg 11978913
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 129 bits (65), Expect = 1e-26 Identities = 152/180 (84%), Gaps = 1/180 (0%) Strand = Plus / Plus Query: 500 gtatgttttagcttttcccttctctttctagcaggcccaaggcactcataaggatttgca 559 |||||||||||||| ||||||| |||||| |||| ||||| || |||| ||||| ||| Sbjct: 2552 gtatgttttagcttctcccttcgctttctcgcagctccaagacattcatgtggattagca 2611 Query: 560 tagaagtagtcttcttccttaggctgcccagcgatgacttttctttctcgtgggctggct 619 ||||||||||| |||||||| |||||||| || || | |||| |||| ||||| | ||| Sbjct: 2612 tagaagtagtcctcttcctttggctgcccggcaat-agctttccttctggtgggttcgct 2670 Query: 620 cattcggccctcatgtagctccttgacagcagtacagaattcattccatgacagctnctg 679 |||||||||||| ||||||||||| ||||||||| ||||||| | ||| ||||||| ||| Sbjct: 2671 cattcggccctcgtgtagctccttcacagcagtagagaattcgtcccaggacagctcctg 2730
>dbj|AK107122.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B06, full insert sequence Length = 1947 Score = 129 bits (65), Expect = 1e-26 Identities = 152/180 (84%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 500 gtatgttttagcttttcccttctctttctagcaggcccaaggcactcataaggatttgca 559 |||||||||||||| ||||||| |||||| |||| ||||| || |||| ||||| ||| Sbjct: 1527 gtatgttttagcttctcccttcgctttctcgcagctccaagacattcatgtggattagca 1468 Query: 560 tagaagtagtcttcttccttaggctgcccagcgatgacttttctttctcgtgggctggct 619 ||||||||||| |||||||| |||||||| || || | |||| |||| ||||| | ||| Sbjct: 1467 tagaagtagtcctcttcctttggctgcccggcaat-agctttccttctggtgggttcgct 1409 Query: 620 cattcggccctcatgtagctccttgacagcagtacagaattcattccatgacagctnctg 679 |||||||||||| ||||||||||| ||||||||| ||||||| | ||| ||||||| ||| Sbjct: 1408 cattcggccctcgtgtagctccttcacagcagtagagaattcgtcccaggacagctcctg 1349
>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0014I10, complete sequence Length = 113946 Score = 129 bits (65), Expect = 1e-26 Identities = 152/180 (84%), Gaps = 1/180 (0%) Strand = Plus / Plus Query: 500 gtatgttttagcttttcccttctctttctagcaggcccaaggcactcataaggatttgca 559 |||||||||||||| ||||||| |||||| |||| ||||| || |||| ||||| ||| Sbjct: 83234 gtatgttttagcttctcccttcgctttctcgcagctccaagacattcatgtggattagca 83293 Query: 560 tagaagtagtcttcttccttaggctgcccagcgatgacttttctttctcgtgggctggct 619 ||||||||||| |||||||| |||||||| || || | |||| |||| ||||| | ||| Sbjct: 83294 tagaagtagtcctcttcctttggctgcccggcaat-agctttccttctggtgggttcgct 83352 Query: 620 cattcggccctcatgtagctccttgacagcagtacagaattcattccatgacagctnctg 679 |||||||||||| ||||||||||| ||||||||| ||||||| | ||| ||||||| ||| Sbjct: 83353 cattcggccctcgtgtagctccttcacagcagtagagaattcgtcccaggacagctcctg 83412
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 73.8 bits (37), Expect = 7e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 542 cactcataaggatttgcatagaagtagtcttcttccttagg 582 ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 18163226 cactcatgaggatttgcatagaagtagtcttcttccttagg 18163266
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05 Length = 158189 Score = 73.8 bits (37), Expect = 7e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 542 cactcataaggatttgcatagaagtagtcttcttccttagg 582 ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 11950 cactcatgaggatttgcatagaagtagtcttcttccttagg 11990
>dbj|AK073003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150K23, full insert sequence Length = 2335 Score = 73.8 bits (37), Expect = 7e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 542 cactcataaggatttgcatagaagtagtcttcttccttagg 582 ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1915 cactcatgaggatttgcatagaagtagtcttcttccttagg 1875
>ref|NM_111092.3| Arabidopsis thaliana unknown protein AT3G02250 mRNA, complete cds Length = 2608 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 545 tcataaggatttgcatagaagtagtcttcttc 576 ||||| ||||| |||||||||||||||||||| Sbjct: 2172 tcatatggattagcatagaagtagtcttcttc 2141
>gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete sequence Length = 94369 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 545 tcataaggatttgcatagaagtagtcttcttc 576 ||||| ||||| |||||||||||||||||||| Sbjct: 50644 tcatatggattagcatagaagtagtcttcttc 50613
>gb|AY056304.1| Arabidopsis thaliana putative auxin-independent growth promoter protein (At3g02250) mRNA, complete cds Length = 2456 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 545 tcataaggatttgcatagaagtagtcttcttc 576 ||||| ||||| |||||||||||||||||||| Sbjct: 2051 tcatatggattagcatagaagtagtcttcttc 2020
>gb|AY140026.1| Arabidopsis thaliana putative auxin-independent growth promoter (At3g02250) mRNA, complete cds Length = 2448 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 545 tcataaggatttgcatagaagtagtcttcttc 576 ||||| ||||| |||||||||||||||||||| Sbjct: 2053 tcatatggattagcatagaagtagtcttcttc 2022
>emb|BX823979.1|CNS0A7F7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH11ZH07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2569 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 545 tcataaggatttgcatagaagtagtcttcttc 576 ||||| ||||| |||||||||||||||||||| Sbjct: 2171 tcatatggattagcatagaagtagtcttcttc 2140
>gb|AY084929.1| Arabidopsis thaliana clone 121858 mRNA, complete sequence Length = 1128 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 545 tcataaggatttgcatagaagtagtcttcttc 576 ||||| ||||| |||||||||||||||||||| Sbjct: 733 tcatatggattagcatagaagtagtcttcttc 702
>ref|NM_001035886.1| Arabidopsis thaliana unknown protein AT2G03280 transcript variant AT2G03280.2 mRNA, complete cds Length = 2344 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 550 aggatttgcatagaagtagtcttcttcctt 579 |||||| ||||||||||| ||||||||||| Sbjct: 1565 aggattggcatagaagtaatcttcttcctt 1536
>ref|NM_126379.2| Arabidopsis thaliana unknown protein AT2G03280 transcript variant AT2G03280.1 mRNA, complete cds Length = 3632 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 550 aggatttgcatagaagtagtcttcttcctt 579 |||||| ||||||||||| ||||||||||| Sbjct: 1448 aggattggcatagaagtaatcttcttcctt 1419
>gb|AY600545.1| Arabidopsis thaliana hypothetical protein (At2g03280) mRNA, complete cds, alternatively spliced Length = 1688 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 550 aggatttgcatagaagtagtcttcttcctt 579 |||||| ||||||||||| ||||||||||| Sbjct: 1565 aggattggcatagaagtaatcttcttcctt 1536
>gb|AY600544.1| Arabidopsis thaliana hypothetical protein (At2g03280) mRNA, complete cds, alternatively spliced Length = 1603 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 550 aggatttgcatagaagtagtcttcttcctt 579 |||||| ||||||||||| ||||||||||| Sbjct: 1480 aggattggcatagaagtaatcttcttcctt 1451
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 542 cactcataaggatttgcatagaagtagtcttcttcctt 579 ||||||| ||||| || |||||||||||||||||||| Sbjct: 32116 cactcatgtggattggcgtagaagtagtcttcttcctt 32153
>gb|AC006284.4| Arabidopsis thaliana chromosome 2 clone T4M8 map CIC11A04, complete sequence Length = 89137 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 550 aggatttgcatagaagtagtcttcttcctt 579 |||||| ||||||||||| ||||||||||| Sbjct: 83482 aggattggcatagaagtaatcttcttcctt 83453
>gb|AC005313.3| Arabidopsis thaliana chromosome 2 clone T18E12 map CIC11A04, complete sequence Length = 91318 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 550 aggatttgcatagaagtagtcttcttcctt 579 |||||| ||||||||||| ||||||||||| Sbjct: 17313 aggattggcatagaagtaatcttcttcctt 17284
>gb|BT002839.1| Arabidopsis thaliana clone RAFL15-01-M05 (R20306) putative axi 1 protein (At2g03280) mRNA, complete cds Length = 1641 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 550 aggatttgcatagaagtagtcttcttcctt 579 |||||| ||||||||||| ||||||||||| Sbjct: 1446 aggattggcatagaagtaatcttcttcctt 1417
>gb|AY924736.1| Arabidopsis thaliana hypothetical protein (At2g03280) mRNA, complete cds Length = 1446 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 550 aggatttgcatagaagtagtcttcttcctt 579 |||||| ||||||||||| ||||||||||| Sbjct: 1428 aggattggcatagaagtaatcttcttcctt 1399
>gb|AC119911.10| Mus musculus chromosome 1, clone RP24-242P4, complete sequence Length = 175107 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 436 ccactgttaactccagccctc 456 ||||||||||||||||||||| Sbjct: 48647 ccactgttaactccagccctc 48627
>emb|CR339048.12| Zebrafish DNA sequence from clone DKEY-27L15 in linkage group 17, complete sequence Length = 128760 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 34 aaaagcaaatgctgcaatctaacac 58 ||||||||| ||||||||||||||| Sbjct: 123691 aaaagcaaaagctgcaatctaacac 123667
>dbj|AK134620.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330502D15 product:nuclear VCP-like, full insert sequence Length = 1502 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 436 ccactgttaactccagccctc 456 ||||||||||||||||||||| Sbjct: 1006 ccactgttaactccagccctc 986
>gb|AC092670.2| Homo sapiens BAC clone RP11-586D5 from 4, complete sequence Length = 157951 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 267 tgcacatgcacagcagtgttacaac 291 ||||||| ||||||||||||||||| Sbjct: 84929 tgcacattcacagcagtgttacaac 84905
>gb|AC092782.2| Homo sapiens chromosome 1 clone RP11-411G13, complete sequence Length = 155355 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 267 tgcacatgcacagcagtgttacaac 291 ||||||| ||||||||||||||||| Sbjct: 67875 tgcacattcacagcagtgttacaac 67899
>gb|AC138596.13| Mus musculus chromosome 1, clone RP24-287G17, complete sequence Length = 151611 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 512 ttttcccttctctttctagca 532 ||||||||||||||||||||| Sbjct: 95863 ttttcccttctctttctagca 95843
>emb|Z98528.1|GMRPHYCOE Griffithsia monolis R-phycoerythrin gene, alpha and beta subunits Length = 1158 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 gatcatccaatacagaagaat 247 ||||||||||||||||||||| Sbjct: 322 gatcatccaatacagaagaat 302
>gb|AC160959.5| Mus musculus BAC clone RP24-230N7 from chromosome 1, complete sequence Length = 153369 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 512 ttttcccttctctttctagca 532 ||||||||||||||||||||| Sbjct: 37915 ttttcccttctctttctagca 37895
>ref|NM_121579.3| Arabidopsis thaliana unknown protein AT5G15740 mRNA, complete cds Length = 2458 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 tagaagtagtcttcttcctt 579 |||||||||||||||||||| Sbjct: 2142 tagaagtagtcttcttcctt 2123
>gb|AC138680.7| Mus musculus chromosome 1, clone RP23-373D7, complete sequence Length = 175790 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 tcttaggtggtacatgaggaggct 352 ||||||||||||||||| |||||| Sbjct: 155200 tcttaggtggtacatgaagaggct 155223
>gb|AC132235.3| Mus musculus BAC clone RP24-497H15 from chromosome 17, complete sequence Length = 180462 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 atatgagcacgtcttaggtg 337 |||||||||||||||||||| Sbjct: 173139 atatgagcacgtcttaggtg 173158
>gb|AC146173.2| Pan troglodytes BAC clone RP43-36F20 from 7, complete sequence Length = 197121 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 gtttatgtacatcaaaagca 40 |||||||||||||||||||| Sbjct: 130974 gtttatgtacatcaaaagca 130955
>gb|AC079791.5| Homo sapiens BAC clone RP11-500M10 from 7, complete sequence Length = 103836 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 gtttatgtacatcaaaagca 40 |||||||||||||||||||| Sbjct: 400 gtttatgtacatcaaaagca 381
>gb|AC092098.3| Homo sapiens BAC clone RP11-533K11 from 7, complete sequence Length = 198786 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 gtttatgtacatcaaaagca 40 |||||||||||||||||||| Sbjct: 197186 gtttatgtacatcaaaagca 197167
>emb|AL445523.11| Human DNA sequence from clone RP11-231N9 on chromosome X Contains a karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene and a chaperonin containing TCP1, subunit 4 (delta) (CCT4) pseudogene, complete sequence Length = 157946 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 agcttttcccttctctttct 528 |||||||||||||||||||| Sbjct: 149277 agcttttcccttctctttct 149258
>emb|AL450344.4| Human DNA sequence from clone RP11-136K14 on chromosome 6 Contains three novel genes, the 5' end of a novel gene (contains FLJ31738 and KIAA1209) and a CpG island, complete sequence Length = 150005 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 tcctctccacctcccatgtt 226 |||||||||||||||||||| Sbjct: 35302 tcctctccacctcccatgtt 35321
>emb|AL158203.12| Human DNA sequence from clone RP11-93B10 on chromosome Xq12-13.1, complete sequence Length = 162680 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 ttcccttctctttctagcag 533 |||||||||||||||||||| Sbjct: 141333 ttcccttctctttctagcag 141352
>emb|BX957222.1| Methanococcus maripaludis S2 complete genome; segment 4/5 Length = 349607 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tttgaagcaaggtttatgta 29 |||||||||||||||||||| Sbjct: 90930 tttgaagcaaggtttatgta 90949
>emb|AL391144.1|ATF14F8 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F8 (ESSA project) Length = 96892 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 tagaagtagtcttcttcctt 579 |||||||||||||||||||| Sbjct: 50445 tagaagtagtcttcttcctt 50464
>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12, complete sequence Length = 155592 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 aatacagaagaatactctgctgag 258 |||||||||||||||| ||||||| Sbjct: 137419 aatacagaagaatactgtgctgag 137396
>emb|BX649590.15| Zebrafish DNA sequence from clone CH211-143I6 in linkage group 9, complete sequence Length = 120653 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tatgtacatcaaaagcaaat 43 |||||||||||||||||||| Sbjct: 119926 tatgtacatcaaaagcaaat 119907
>emb|BX470133.27| Zebrafish DNA sequence from clone DKEY-169N7 in linkage group 9, complete sequence Length = 178929 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tatgtacatcaaaagcaaat 43 |||||||||||||||||||| Sbjct: 1273 tatgtacatcaaaagcaaat 1254
>gb|AC092422.3| Homo sapiens chromosome 3 clone RP11-537O8, complete sequence Length = 188643 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 actgttaactccagccctct 457 |||||||||||||||||||| Sbjct: 79141 actgttaactccagccctct 79160
>dbj|AK220896.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-45-N06 Length = 895 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 tagaagtagtcttcttcctt 579 |||||||||||||||||||| Sbjct: 584 tagaagtagtcttcttcctt 565
>gb|AC109117.5| Rattus norvegicus BAC CH230-75J22 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 228314 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 cttttcccttctctttctag 530 |||||||||||||||||||| Sbjct: 105301 cttttcccttctctttctag 105282
>gb|BT023458.1| Arabidopsis thaliana At5g15740 gene, complete cds Length = 2172 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 tagaagtagtcttcttcctt 579 |||||||||||||||||||| Sbjct: 2099 tagaagtagtcttcttcctt 2080
>emb|BX832033.1|CNS0A1Q0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH47ZG07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2419 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 tagaagtagtcttcttcctt 579 |||||||||||||||||||| Sbjct: 2145 tagaagtagtcttcttcctt 2126
>emb|AL954707.18| Mouse DNA sequence from clone RP23-359C15 on chromosome 2, complete sequence Length = 205927 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 ctctgggtggcataagctcctctc 213 |||||||||||| ||||||||||| Sbjct: 140902 ctctgggtggcagaagctcctctc 140879
>gb|AC006144.1|AC006144 Homo sapiens PAC clone RP1-296G17 from Xq23, complete sequence Length = 81184 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 gcctctgggtggcataagct 207 |||||||||||||||||||| Sbjct: 41350 gcctctgggtggcataagct 41369
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gagtggagactcgacgaaaa 316 |||||||||||||||||||| Sbjct: 114230 gagtggagactcgacgaaaa 114211
>dbj|AP002826.2| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2373H22, complete sequences Length = 132228 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 ttcccttctctttctagcag 533 |||||||||||||||||||| Sbjct: 83127 ttcccttctctttctagcag 83146
>dbj|AP001521.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-644A8, complete sequences Length = 179098 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 ttcccttctctttctagcag 533 |||||||||||||||||||| Sbjct: 2306 ttcccttctctttctagcag 2325
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome Length = 1267782 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tgtacatcaaaagcaaatgc 45 |||||||||||||||||||| Sbjct: 944460 tgtacatcaaaagcaaatgc 944479
>emb|AL359402.3|CNS05TEX Human chromosome 14 DNA sequence BAC C-2273N11 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 119296 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 atctacatctacagttcactcaca 120 |||||||| ||||||||||||||| Sbjct: 97128 atctacatttacagttcactcaca 97105
>emb|AL663037.13| Mouse DNA sequence from clone RP23-103K12 on chromosome 4, complete sequence Length = 246021 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 accactgttaactccagccc 454 |||||||||||||||||||| Sbjct: 68868 accactgttaactccagccc 68887
>emb|AL352978.6|CNS05TBX Human chromosome 14 DNA sequence BAC C-3059L23 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 141450 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 atctacatctacagttcactcaca 120 |||||||| ||||||||||||||| Sbjct: 17617 atctacatttacagttcactcaca 17594
>emb|AL592112.7| Mouse DNA sequence from clone RP23-87H12 on chromosome 17, complete sequence Length = 158307 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 atatgagcacgtcttaggtg 337 |||||||||||||||||||| Sbjct: 128397 atatgagcacgtcttaggtg 128378 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,036,987 Number of Sequences: 3902068 Number of extensions: 6036987 Number of successful extensions: 104439 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104244 Number of HSP's gapped (non-prelim): 189 length of query: 681 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 658 effective length of database: 17,143,297,704 effective search space: 11280289889232 effective search space used: 11280289889232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
