ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14d17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PDZK8_HUMAN (Q8NEN9) PDZ domain-containing protein 8 (Sarcoma an... 33 0.80
2ANXA4_PIG (P08132) Annexin A4 (Annexin IV) (Lipocortin IV) (Endo... 31 2.3
3ANXA4_HUMAN (P09525) Annexin A4 (Annexin IV) (Lipocortin IV) (En... 31 2.3
4ANXA4_CANFA (P50994) Annexin A4 (Annexin IV) (Lipocortin IV) (36... 31 2.3
5ANXA4_BOVIN (P13214) Annexin A4 (Annexin IV) (Lipocortin IV) (En... 31 2.3
6ANXA4_MOUSE (P97429) Annexin A4 (Annexin IV) 31 3.0
7Y1238_CLOTE (Q895N4) UPF0348 protein CTC_01238 30 4.0
8YRB30_YEAST (P53107) Ran-specific GTPase-activating protein 30 (... 30 6.7
9ANXA4_RAT (P55260) Annexin A4 (Annexin IV) (Lipocortin IV) (36 k... 30 6.7
10OFD1_HUMAN (O75665) Oral-facial-digital syndrome 1 protein (Prot... 29 8.8
11ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens... 29 8.8

>PDZK8_HUMAN (Q8NEN9) PDZ domain-containing protein 8 (Sarcoma antigen|
           NY-SAR-84/NY-SAR-104)
          Length = 1154

 Score = 32.7 bits (73), Expect = 0.80
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 415 GITLCKEAFQDTQFSSPEHLIFGEKKIWKR 326
           G+T  K +FQDTQF +P    + +KK+W +
Sbjct: 835 GLTENKHSFQDTQFQNPTWCDYCKKKVWTK 864



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>ANXA4_PIG (P08132) Annexin A4 (Annexin IV) (Lipocortin IV) (Endonexin I)|
           (Chromobindin-4) (Protein II) (P32.5) (Placental
           anticoagulant protein I) (PAP-II) (PP4-X) (35-beta
           calcimedin)
          Length = 318

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 507 DLREVTQGGKSKFGSDSKTLLRVLCHRNDSEASHYVKKHFKI 382
           D +++ + G+ K+G+D    L VLC RN +   H   ++ +I
Sbjct: 173 DAQDLYEAGEKKWGTDEVKFLTVLCSRNRNHLLHVFDEYKRI 214



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>ANXA4_HUMAN (P09525) Annexin A4 (Annexin IV) (Lipocortin IV) (Endonexin I)|
           (Chromobindin-4) (Protein II) (P32.5) (Placental
           anticoagulant protein II) (PAP-II) (PP4-X) (35-beta
           calcimedin) (Carbohydrate-binding protein P33/P41)
           (P33/41)
          Length = 318

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 507 DLREVTQGGKSKFGSDSKTLLRVLCHRNDSEASHYVKKHFKI 382
           D +++ + G+ K+G+D    L VLC RN +   H   ++ +I
Sbjct: 173 DAQDLYEAGEKKWGTDEVKFLTVLCSRNRNHLLHVFDEYKRI 214



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>ANXA4_CANFA (P50994) Annexin A4 (Annexin IV) (Lipocortin IV) (36 kDa zymogen|
           granule membrane-associated protein) (ZAP36)
          Length = 318

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 507 DLREVTQGGKSKFGSDSKTLLRVLCHRNDSEASHYVKKHFKI 382
           D +++ + G+ K+G+D    L VLC RN +   H   ++ +I
Sbjct: 173 DAQDLYEAGEKKWGTDEVKFLTVLCSRNRNHLLHVFDEYKRI 214



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>ANXA4_BOVIN (P13214) Annexin A4 (Annexin IV) (Lipocortin IV) (Endonexin I)|
           (Chromobindin-4) (Protein II) (P32.5) (Placental
           anticoagulant protein II) (PAP-II) (PP4-X) (35-beta
           calcimedin) (Carbohydrate-binding protein P33/P41)
           (P33/41)
          Length = 318

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 507 DLREVTQGGKSKFGSDSKTLLRVLCHRNDSEASHYVKKHFKI 382
           D +++ + G+ K+G+D    L VLC RN +   H   ++ +I
Sbjct: 173 DAQDLYEAGEKKWGTDEVKFLTVLCSRNRNHLLHVFDEYKRI 214



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>ANXA4_MOUSE (P97429) Annexin A4 (Annexin IV)|
          Length = 318

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 507 DLREVTQGGKSKFGSDSKTLLRVLCHRNDSEASHYVKKHFKI 382
           D +E+ + G+ ++G+D    L +LC RN +   H   ++ +I
Sbjct: 173 DAQELYEAGEKRWGTDEVKFLSILCSRNRNHLLHVFDEYKRI 214



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>Y1238_CLOTE (Q895N4) UPF0348 protein CTC_01238|
          Length = 403

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 26/91 (28%), Positives = 45/91 (49%)
 Frame = -3

Query: 576 ENLVSRVRPVINLIKQETRVLIDDLREVTQGGKSKFGSDSKTLLRVLCHRNDSEASHYVK 397
           E+L + +   I+      + LI+ +R+    GK+ F  ++     VLC  N+  A  Y K
Sbjct: 127 EDLKNFIDKGISFPNAREKALINFMRK----GKNSFDFNN-----VLCLSNNILALEYCK 177

Query: 396 KHFKIPSSAPPST*FSGKRKSGNASKVHIMD 304
             FKI S+  P   F+ KR+  + + +H+ D
Sbjct: 178 NLFKINSNIKP---FTVKRQGSHYNCLHLRD 205



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>YRB30_YEAST (P53107) Ran-specific GTPase-activating protein 30 (Ran-binding|
           protein 30) (RANBP30)
          Length = 440

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +1

Query: 445 QQGFGVASEFAFASLSNFAQIINKHTGLLLDQIYYRTNTRDQILNSS 585
           + G  +AS +A  +++NF   I K     +DQ+ ++  +R  I++S+
Sbjct: 18  KSGISIASTYALKTITNFVVQIPKDDARRIDQLKFKLESRMAIVSSA 64



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>ANXA4_RAT (P55260) Annexin A4 (Annexin IV) (Lipocortin IV) (36 kDa zymogen|
           granule membrane-associated protein) (ZAP36)
          Length = 318

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -3

Query: 507 DLREVTQGGKSKFGSDSKTLLRVLCHRNDSEASHYVKKHFKI 382
           D +++ + G+ ++G+D    L +LC RN +   H   ++ +I
Sbjct: 173 DAQDLYEAGEKRWGTDEVKFLSILCSRNRNHLLHVFDEYKRI 214



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>OFD1_HUMAN (O75665) Oral-facial-digital syndrome 1 protein (Protein 71-7A)|
          Length = 1012

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -2

Query: 469 RKRLQNPAEGPVPQK*FRGITLCKEAFQDTQFSSPEHLIFGEKKI 335
           R+ ++N A+ P+  K    + L  EAF++   SSPE  IFGE ++
Sbjct: 654 RRVIKNSAKSPLAAKSPPSLHLL-EAFKNITSSSPERHIFGEDRV 697



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>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
           (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1745

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 3   QMTAKRYIGHTHKKPPYRIVSISSETTTDQHSHQTEMPSKSS 128
           Q  A  + G +H +PP R  S S +  ++   H T+ P + S
Sbjct: 293 QSLASDHSGRSHDRPPRRSQSRSPDQRSEPSDHSTQSPQQPS 334


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,521,459
Number of Sequences: 219361
Number of extensions: 1870409
Number of successful extensions: 5375
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5375
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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