ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF479043.1| Triticum aestivum 40S ribosomal protein mRNA, par... 174 9e-41
2gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3A mRN... 113 3e-22
3gb|AY109383.1| Zea mays CL7224_1 mRNA sequence 82 1e-12
4gb|BT016390.1| Zea mays clone Contig223 mRNA sequence 76 6e-11
5ref|XM_464995.1| Oryza sativa (japonica cultivar-group), mRNA 70 4e-09
6ref|XM_506775.1| PREDICTED Oryza sativa (japonica cultivar-group... 70 4e-09
7dbj|AK099131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 4e-09
8dbj|AK059647.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 4e-09
9gb|AF052503.1|AF052503 Oryza sativa S-phase-specific ribosomal p... 70 4e-09
10gb|DQ159867.1| Cymbidium faberi clone CDD-470 40s ribosomal prot... 68 1e-08
11gb|BT019079.1| Zea mays clone Contig661.F mRNA sequence 62 9e-07
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 9e-07
13dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic D... 62 9e-07
14dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic D... 62 9e-07
15emb|Z25769.1|BRSPSG B.rapa mRNA for S phase specific gene 56 5e-05
16gb|L23553.1|BRRSPSK Brassica rapa S-phase-specific (BIS289) mRNA... 56 5e-05
17ref|NM_119633.2| Arabidopsis thaliana structural constituent of ... 48 0.013
18gb|AF542188.1| Triticum aestivum cyc07 mRNA, complete cds 48 0.013
19gb|AY062500.1| Arabidopsis thaliana Putative S-phase-specific ri... 48 0.013
20emb|BX826401.1|CNS0A38P Arabidopsis thaliana Full-length cDNA Co... 48 0.013
21emb|AJ001342.1|ATCYC07 Arabidopsis thaliana mRNA for S-phase-spe... 48 0.013
22dbj|AB029635.1| Daucus carota mRNA for cyc07, complete cds 48 0.013
23dbj|D26060.1|RICT151 Oryza sativa mRNA for cyc07, complete cds 44 0.21
24dbj|AK104699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.21
25dbj|AK104243.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.21
26dbj|AK069251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.21
27gb|BT022161.1| Drosophila melanogaster IP01358 full insert cDNA 42 0.82
28emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, ... 42 0.82
29emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, ... 42 0.82
30emb|AL023094.2|ATT4L20 Arabidopsis thaliana DNA chromosome 4, BA... 42 0.82
31ref|NM_206456.1| Drosophila melanogaster rotund CG32466-RB, tran... 42 0.82
32ref|NM_141458.2| Drosophila melanogaster rotund CG32466-RA, tran... 42 0.82
33gb|AF395905.1|AF395905 Drosophila melanogaster rotund mRNA, comp... 42 0.82
34gb|AF395904.1|AF395904 Drosophila melanogaster roughened eye mRN... 42 0.82
35gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 0.82
36gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, r... 42 0.82
37emb|BX828268.1|CNS0A2YE Arabidopsis thaliana Full-length cDNA Co... 42 0.82
38ref|NM_209036.1| Eremothecium gossypii ACR281Cp (ACR281C), mRNA 42 0.82
39gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12... 42 0.82
40gb|AC148997.1| Mus musculus BAC clone RP23-338B6 from chromosome... 40 3.2
41gb|AC135639.4| Mus musculus BAC clone RP23-330O16 from chromosom... 40 3.2
42gb|AC127358.3| Mus musculus BAC clone RP23-109B9 from chromosome... 40 3.2
43gb|AC127678.9| Mus musculus BAC clone RP24-233M12 from chromosom... 40 3.2
44emb|AL008712.1|HS84F12 Human DNA sequence from clone RP1-84F12 o... 40 3.2
45gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence 40 3.2
46gb|AC140899.3| Homo sapiens chromosome 16 clone RP11-792K9, comp... 40 3.2
47ref|XM_231763.3| PREDICTED: Rattus norvegicus nuclear factor, er... 40 3.2
48gb|AC000055.1|HSAC000055 Human PAC clone DJ073F11 from Xq23, com... 40 3.2
49gb|L31645.1|HNNSPSP Helianthus annuus ribosomal protein S3a mRNA... 40 3.2 
>gb|AF479043.1| Triticum aestivum 40S ribosomal protein mRNA, partial cds
          Length = 342

 Score =  174 bits (88), Expect = 9e-41
 Identities = 108/114 (94%), Gaps = 3/114 (2%)
 Strand = Plus / Minus

                                                                       
Query: 140 ctactcagcagcagcaacctcctccgcaccaggaatgacctcatctccatcag---gcct 196
           |||||||||||||||||||||||||||||||||||||||||| || |||||||   ||||
Sbjct: 342 ctactcagcagcagcaacctcctccgcaccaggaatgacctcgtccccatcagcaggcct 283

                                                                 
Query: 197 gtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctt 250
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 282 gtcaagcttcacaccaacatcctccttgtagtcaccgtgaacctccatgagctt 229
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>gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3A mRNA, partial cds
          Length = 382

 Score =  113 bits (57), Expect = 3e-22
 Identities = 101/115 (87%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                       
Query: 139 tctactcagcagcagcaacctcctccgcaccaggaatgacctcatctccat---caggcc 195
           ||||||| ||||||||||||||||| ||||| || ||||||||||||||||   ||||||
Sbjct: 257 tctactcggcagcagcaacctcctcagcaccggggatgacctcatctccatcagcaggcc 198

                                                                  
Query: 196 tgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctt 250
           |||| | |||   ||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 197 tgtccaacttggtaccaacatcttccttgtagtcaccatgcacctccatgagctt 143



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 52  tcaaaactgactaca-aagttcacgaca 78
           ||||||||||||||| ||||||||||||
Sbjct: 357 tcaaaactgactacagaagttcacgaca 330
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>gb|AY109383.1| Zea mays CL7224_1 mRNA sequence
          Length = 1236

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                       
Query: 190 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagct 249
           ||||||| ||||||||||||||||||||||| |||||||| || || |||||||||||||
Sbjct: 383 caggcctctcaagcttcacaccaacatcctctttgtagtcgccatgaacctccatgagct 442

            
Query: 250 t 250
           |
Sbjct: 443 t 443
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>gb|BT016390.1| Zea mays clone Contig223 mRNA sequence
          Length = 1104

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                     
Query: 190 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgag 247
           ||||||| ||||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 812 caggcctctcaagcttcacaccaacatcctctttgtagtcgccatgaacctccatgag 755
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>ref|XM_464995.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1063

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 190 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccat 244
           |||||||||| ||||||| ||| ||||| ||||||||||||||||| ||||||||
Sbjct: 774 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacctccat 720
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>ref|XM_506775.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1115_D03.49
           mRNA
          Length = 1171

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 190 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccat 244
           |||||||||| ||||||| ||| ||||| ||||||||||||||||| ||||||||
Sbjct: 810 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacctccat 756
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>dbj|AK099131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M05, full
           insert sequence
          Length = 1063

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 190 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccat 244
           |||||||||| ||||||| ||| ||||| ||||||||||||||||| ||||||||
Sbjct: 774 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacctccat 720
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>dbj|AK059647.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C03, full
           insert sequence
          Length = 1171

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 190 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccat 244
           |||||||||| ||||||| ||| ||||| ||||||||||||||||| ||||||||
Sbjct: 810 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacctccat 756
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>gb|AF052503.1|AF052503 Oryza sativa S-phase-specific ribosomal protein (RSPSP94) mRNA,
           complete cds
          Length = 1027

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 190 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccat 244
           |||||||||| ||||||| ||| ||||| ||||||||||||||||| ||||||||
Sbjct: 771 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacctccat 717
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>gb|DQ159867.1| Cymbidium faberi clone CDD-470 40s ribosomal protein S3 mRNA,
           partial cds
          Length = 462

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 190 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgag 247
           |||||||||||||||||||||||| ||| |||||||| || || || |||||||||||
Sbjct: 169 caggcctgtcaagcttcacaccaaaatcttccttgtaatctccatgaacctccatgag 112
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>gb|BT019079.1| Zea mays clone Contig661.F mRNA sequence
          Length = 1229

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                  
Query: 190 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccat 244
           ||||||| ||||||||||||||||| ||||| |||||||| || || ||||||||
Sbjct: 281 caggcctctcaagcttcacaccaacgtcctctttgtagtcgccatgaacctccat 335
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                   
Query: 190      caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacct 240
                |||||||||| ||||||| ||| ||||| ||||||||||||||||| ||||
Sbjct: 10822102 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacct 10822152
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>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1756_H07
          Length = 217205

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                
Query: 190   caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacct 240
             |||||||||| ||||||| ||| ||||| ||||||||||||||||| ||||
Sbjct: 28301 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacct 28351
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>dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1115_D03
          Length = 169378

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                 
Query: 190    caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacct 240
              |||||||||| ||||||| ||| ||||| ||||||||||||||||| ||||
Sbjct: 161583 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacct 161633
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>emb|Z25769.1|BRSPSG B.rapa mRNA for S phase specific gene
          Length = 1050

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 56/63 (88%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                       
Query: 192 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 248
           |||||||||| ||||||||||||||||||  || ||||||| ||||| |||||||| |||
Sbjct: 848 ggcctgtcaaccttcacaccaacatcctctgctgtgtagtctccgtgaacctccataagc 789

              
Query: 249 ttt 251
           |||
Sbjct: 788 ttt 786
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>gb|L23553.1|BRRSPSK Brassica rapa S-phase-specific (BIS289) mRNA, complete cds
          Length = 1050

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 56/63 (88%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                       
Query: 192 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 248
           |||||||||| ||||||||||||||||||  || ||||||| ||||| |||||||| |||
Sbjct: 848 ggcctgtcaaccttcacaccaacatcctctgctgtgtagtctccgtgaacctccataagc 789

              
Query: 249 ttt 251
           |||
Sbjct: 788 ttt 786
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>ref|NM_119633.2| Arabidopsis thaliana structural constituent of ribosome AT4G34670
           mRNA, complete cds
          Length = 1093

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 55/63 (87%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                       
Query: 192 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 248
           |||||||| | ||||||||||||||||||  || |||| || || |||||||||||||||
Sbjct: 818 ggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctccatgagc 759

              
Query: 249 ttt 251
           |||
Sbjct: 758 ttt 756
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>gb|AF542188.1| Triticum aestivum cyc07 mRNA, complete cds
          Length = 820

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 52/59 (88%), Gaps = 2/59 (3%)
 Strand = Plus / Minus

                                                                      
Query: 190 caggcctgtcaagcttca-caccaacatcctcc-ttgtagtcaccgtgcacctccatga 246
           ||||||||||||| || | |||||||||||||| |||||||| ||||| ||||| ||||
Sbjct: 810 caggcctgtcaaggtttaacaccaacatcctccnttgtagtccccgtgaacctcnatga 752
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>gb|AY062500.1| Arabidopsis thaliana Putative S-phase-specific ribosomal protein
           (At4g34670; T4L20.250) mRNA, complete cds
          Length = 1094

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 55/63 (87%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                       
Query: 192 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 248
           |||||||| | ||||||||||||||||||  || |||| || || |||||||||||||||
Sbjct: 818 ggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctccatgagc 759

              
Query: 249 ttt 251
           |||
Sbjct: 758 ttt 756
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>emb|BX826401.1|CNS0A38P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB21ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 836

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 55/63 (87%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                       
Query: 192 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 248
           |||||||| | ||||||||||||||||||  || |||| || || |||||||||||||||
Sbjct: 647 ggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctccatgagc 588

              
Query: 249 ttt 251
           |||
Sbjct: 587 ttt 585
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>emb|AJ001342.1|ATCYC07 Arabidopsis thaliana mRNA for S-phase-specific ribosomal protein
          Length = 906

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 55/63 (87%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                       
Query: 192 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 248
           |||||||| | ||||||||||||||||||  || |||| || || |||||||||||||||
Sbjct: 740 ggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctccatgagc 681

              
Query: 249 ttt 251
           |||
Sbjct: 680 ttt 678
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>dbj|AB029635.1| Daucus carota mRNA for cyc07, complete cds
          Length = 1050

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 201 agcttcacaccaacatcctccttgtagtcaccgtgcacctccat 244
           ||||||||||||||||||||   ||||||||| || ||||||||
Sbjct: 749 agcttcacaccaacatcctcagagtagtcaccatgaacctccat 706
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>dbj|D26060.1|RICT151 Oryza sativa mRNA for cyc07, complete cds
          Length = 1065

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 225 tagtcaccgtgcacctccatgagctt 250
           |||||||| |||||||||||||||||
Sbjct: 799 tagtcaccatgcacctccatgagctt 774
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>dbj|AK104699.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C03, full
           insert sequence
          Length = 942

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 225 tagtcaccgtgcacctccatgagctt 250
           |||||||| |||||||||||||||||
Sbjct: 685 tagtcaccatgcacctccatgagctt 660
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>dbj|AK104243.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D02, full
           insert sequence
          Length = 1032

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 225 tagtcaccgtgcacctccatgagctt 250
           |||||||| |||||||||||||||||
Sbjct: 775 tagtcaccatgcacctccatgagctt 750
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>dbj|AK069251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013H23, full
           insert sequence
          Length = 1097

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 225 tagtcaccgtgcacctccatgagctt 250
           |||||||| |||||||||||||||||
Sbjct: 776 tagtcaccatgcacctccatgagctt 751
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>gb|BT022161.1| Drosophila melanogaster IP01358 full insert cDNA
          Length = 3118

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 147  gcagcagcaacctcctccgca 167
            |||||||||||||||||||||
Sbjct: 1211 gcagcagcaacctcctccgca 1231
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>emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 82
          Length = 195165

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 192  ggcctgtcaagcttcacaccaacatcctc 220
            |||||||| | ||||||||||||||||||
Sbjct: 4951 ggcctgtctaccttcacaccaacatcctc 4923
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>emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81
          Length = 195921

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 192    ggcctgtcaagcttcacaccaacatcctc 220
              |||||||| | ||||||||||||||||||
Sbjct: 195872 ggcctgtctaccttcacaccaacatcctc 195844
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>emb|AL023094.2|ATT4L20 Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSA project)
          Length = 125502

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 192   ggcctgtcaagcttcacaccaacatcctc 220
             |||||||| | ||||||||||||||||||
Sbjct: 86183 ggcctgtctaccttcacaccaacatcctc 86155
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>ref|NM_206456.1| Drosophila melanogaster rotund CG32466-RB, transcript variant B (rn),
            mRNA
          Length = 2444

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 147  gcagcagcaacctcctccgca 167
            |||||||||||||||||||||
Sbjct: 1684 gcagcagcaacctcctccgca 1704
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>ref|NM_141458.2| Drosophila melanogaster rotund CG32466-RA, transcript variant A (rn),
            mRNA
          Length = 3661

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 147  gcagcagcaacctcctccgca 167
            |||||||||||||||||||||
Sbjct: 2901 gcagcagcaacctcctccgca 2921
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>gb|AF395905.1|AF395905 Drosophila melanogaster rotund mRNA, complete cds
          Length = 3658

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 147  gcagcagcaacctcctccgca 167
            |||||||||||||||||||||
Sbjct: 2898 gcagcagcaacctcctccgca 2918
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>gb|AF395904.1|AF395904 Drosophila melanogaster roughened eye mRNA, complete cds
          Length = 2444

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 147  gcagcagcaacctcctccgca 167
            |||||||||||||||||||||
Sbjct: 1684 gcagcagcaacctcctccgca 1704
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>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
              complete sequence
          Length = 907057

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 147    gcagcagcaacctcctccgca 167
              |||||||||||||||||||||
Sbjct: 867462 gcagcagcaacctcctccgca 867442
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>gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, region 84D-84D, BAC clone
              BACR01C11, complete sequence
          Length = 176991

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 147    gcagcagcaacctcctccgca 167
              |||||||||||||||||||||
Sbjct: 137461 gcagcagcaacctcctccgca 137441
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>emb|BX828268.1|CNS0A2YE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH6ZD12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1008

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 192 ggcctgtcaagcttcacaccaacatcctc 220
           |||||||| | ||||||||||||||||||
Sbjct: 803 ggcctgtctaccttcacaccaacatcctc 775
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>ref|NM_209036.1| Eremothecium gossypii ACR281Cp (ACR281C), mRNA
          Length = 3780

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 147 gcagcagcaacctcctccgca 167
           |||||||||||||||||||||
Sbjct: 846 gcagcagcaacctcctccgca 866
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>gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12 of 118 of the complete
              sequence
          Length = 301379

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 147    gcagcagcaacctcctccgca 167
              |||||||||||||||||||||
Sbjct: 188870 gcagcagcaacctcctccgca 188850
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>gb|AC148997.1| Mus musculus BAC clone RP23-338B6 from chromosome 7, complete sequence
          Length = 232770

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   ctcctccgcaccaggaatga 177
             ||||||||||||||||||||
Sbjct: 38479 ctcctccgcaccaggaatga 38460
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>gb|AC135639.4| Mus musculus BAC clone RP23-330O16 from chromosome 7, complete sequence
          Length = 217404

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    ctcctccgcaccaggaatga 177
              ||||||||||||||||||||
Sbjct: 181258 ctcctccgcaccaggaatga 181239
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>gb|AC127358.3| Mus musculus BAC clone RP23-109B9 from chromosome 18, complete sequence
          Length = 162003

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     gcctcaaaactgactacaaa 68
              ||||||||||||||||||||
Sbjct: 158387 gcctcaaaactgactacaaa 158368
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>gb|AC127678.9| Mus musculus BAC clone RP24-233M12 from chromosome 18, complete sequence
          Length = 157430

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     gcctcaaaactgactacaaa 68
              ||||||||||||||||||||
Sbjct: 135653 gcctcaaaactgactacaaa 135672
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>emb|AL008712.1|HS84F12 Human DNA sequence from clone RP1-84F12 on chromosome Xq25-26.3
             Contains part of the GPC3 gene for glypican 3, complete
             sequence
          Length = 78011

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   cagcagcagcaacctcctcc 164
             ||||||||||||||||||||
Sbjct: 24008 cagcagcagcaacctcctcc 23989
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>gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence
          Length = 157430

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   cctcatctccatcaggcctg 197
             ||||||||||||||||||||
Sbjct: 15763 cctcatctccatcaggcctg 15782
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>gb|AC140899.3| Homo sapiens chromosome 16 clone RP11-792K9, complete sequence
          Length = 194490

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 146    agcagcagcaacctcctccgcaccagga 173
              ||||||| ||||||||||| ||||||||
Sbjct: 176973 agcagcaacaacctcctcctcaccagga 176946
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>ref|XM_231763.3| PREDICTED: Rattus norvegicus nuclear factor, erythroid derived 2,
            like 3 (predicted) (Nfe2l3_predicted), mRNA
          Length = 3024

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   acatatatcatcttctagat 108
            ||||||||||||||||||||
Sbjct: 2643 acatatatcatcttctagat 2624
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>gb|AC000055.1|HSAC000055 Human PAC clone DJ073F11 from Xq23, complete sequence
          Length = 93578

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  ctagataagaagcagcaaaa 122
            ||||||||||||||||||||
Sbjct: 7414 ctagataagaagcagcaaaa 7395
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>gb|L31645.1|HNNSPSP Helianthus annuus ribosomal protein S3a mRNA, complete cds
          Length = 982

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 190 caggcctgtcaagcttcacaccaacatc 217
           |||||||||| | |||||||||||||||
Sbjct: 808 caggcctgtccaacttcacaccaacatc 781


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,763,542
Number of Sequences: 3902068
Number of extensions: 2763542
Number of successful extensions: 48508
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 48420
Number of HSP's gapped (non-prelim): 83
length of query: 251
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 229
effective length of database: 17,147,199,772
effective search space: 3926708747788
effective search space used: 3926708747788
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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