ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13o06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106935.1| Zea mays PCO099889 mRNA sequence Length = 1166 Score = 95.6 bits (48), Expect = 2e-16 Identities = 101/119 (84%) Strand = Plus / Minus Query: 522 tttttgtttnctctagttcatgctccagctcgccaatcgtctgcttcaactgtgtatctc 581 ||||||||| ||| || ||| ||||||| || |||||||||||||||| |||||||||| Sbjct: 762 tttttgtttcctccagctcaagctccaggtctccaatcgtctgcttcagttgtgtatctc 703 Query: 582 gttgccgaagaccttcacgccttgtgaacagaaccaaattttcttcactcaacttctca 640 |||| ||||| |||||||||||| |||||| | | ||||||||||||| ||||||| Sbjct: 702 gttgtcgaagctcttcacgccttgaaaacagagcgatgttttcttcactcagcttctca 644
>ref|NM_195180.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0095J15.7), mRNA Length = 1890 Score = 87.7 bits (44), Expect = 4e-14 Identities = 94/111 (84%) Strand = Plus / Minus Query: 522 tttttgtttnctctagttcatgctccagctcgccaatcgtctgcttcaactgtgtatctc 581 ||||||| | | |||||| ||||| ||||| |||| ||| ||| ||||||||||||||| Sbjct: 1816 tttttgtctccgctagttgttgctctagctccccaaccgtttgcctcaactgtgtatctc 1757 Query: 582 gttgccgaagaccttcacgccttgtgaacagaaccaaattttcttcactca 632 |||| ||||| |||||||||||||||||||| | | ||||||||||||| Sbjct: 1756 gttgtcgaagttcttcacgccttgtgaacagaccgatgttttcttcactca 1706
>dbj|AK058820.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G08, full insert sequence Length = 1174 Score = 87.7 bits (44), Expect = 4e-14 Identities = 94/111 (84%) Strand = Plus / Minus Query: 522 tttttgtttnctctagttcatgctccagctcgccaatcgtctgcttcaactgtgtatctc 581 ||||||| | | |||||| ||||| ||||| |||| ||| ||| ||||||||||||||| Sbjct: 845 tttttgtctccgctagttgttgctctagctccccaaccgtttgcctcaactgtgtatctc 786 Query: 582 gttgccgaagaccttcacgccttgtgaacagaaccaaattttcttcactca 632 |||| ||||| |||||||||||||||||||| | | ||||||||||||| Sbjct: 785 gttgtcgaagttcttcacgccttgtgaacagaccgatgttttcttcactca 735
>dbj|AK068615.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157F21, full insert sequence Length = 2333 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 542 tgctccagctcgccaatcgtctgcttcaactgtgtatctcgttgccgaagaccttcacgc 601 ||||| ||||| |||| ||| ||| ||||||||||||||||||| ||||| |||||||| Sbjct: 1836 tgctctagctccccaaccgtttgcctcaactgtgtatctcgttgtcgaagttcttcacgc 1777 Query: 602 cttgtgaacagaaccaaattttcttcactca 632 |||||||||||| | | ||||||||||||| Sbjct: 1776 cttgtgaacagaccgatgttttcttcactca 1746
>gb|AC092173.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0095J15, complete sequence Length = 156023 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 567 tcaactgtgtatctcgttgccgaagaccttcacgcct 603 ||||||||||||||||||| ||||| |||||||||| Sbjct: 120341 tcaactgtgtatctcgttgtcgaagttcttcacgcct 120377
>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0022I16, complete sequence Length = 127068 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 567 tcaactgtgtatctcgttgccgaagaccttcacgcct 603 ||||||||||||||||||| ||||| |||||||||| Sbjct: 11768 tcaactgtgtatctcgttgtcgaagttcttcacgcct 11804
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 51 cggtccggtccggttttttaaacta 75 ||||||||||||||||||||||||| Sbjct: 89966 cggtccggtccggttttttaaacta 89942
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 567 tcaactgtgtatctcgttgccgaagaccttcacgcct 603 ||||||||||||||||||| ||||| |||||||||| Sbjct: 5248570 tcaactgtgtatctcgttgtcgaagttcttcacgcct 5248606 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 cggtccggtccggtttttta 70 |||||||||||||||||||| Sbjct: 10884074 cggtccggtccggtttttta 10884055
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 567 tcaactgtgtatctcgttgccgaagaccttcacgcct 603 ||||||||||||||||||| ||||| |||||||||| Sbjct: 5249357 tcaactgtgtatctcgttgtcgaagttcttcacgcct 5249393 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 cggtccggtccggtttttta 70 |||||||||||||||||||| Sbjct: 10890114 cggtccggtccggtttttta 10890095
>emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01, complete sequence Length = 148353 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 51 cggtccggtccggttttttaaactagg 77 |||||||||||||||||||| |||||| Sbjct: 119602 cggtccggtccggttttttacactagg 119628
>emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03, complete sequence Length = 130910 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 51 cggtccggtccggttttttaaactagg 77 |||||||||||||||||||| |||||| Sbjct: 6841 cggtccggtccggttttttacactagg 6867
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 51 cggtccggtccggttttttaaactagg 77 |||||||||||||||||||| |||||| Sbjct: 18538975 cggtccggtccggttttttacactagg 18539001
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 51 cggtccggtccggttttttaaactagg 77 |||||||||||||||||||| |||||| Sbjct: 322289 cggtccggtccggttttttacactagg 322315
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 51 cggtccggtccggttttttaaactagg 77 |||||||||||||||||||| |||||| Sbjct: 3327544 cggtccggtccggttttttacactagg 3327570
>dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0414D03 Length = 169823 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 51 cggtccggtccggttttttaaactagg 77 |||||||||||||||||||| |||||| Sbjct: 70888 cggtccggtccggttttttacactagg 70914
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 51 cggtccggtccggttttttaaactagg 77 |||||||||||||||||||| |||||| Sbjct: 137237 cggtccggtccggttttttacactagg 137263
>gb|AC149876.2| Xenopus tropicalis clone CH216-166O21, complete sequence Length = 185995 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 429 gtcctgtcagaagtagaaaaaa 450 |||||||||||||||||||||| Sbjct: 123654 gtcctgtcagaagtagaaaaaa 123675
>gb|DQ023266.1| Pan troglodytes HSD17B1P pseudogene, complete sequence; and 17beta-hydroxysteroid dehydrogenase type 1 (HSD17B1) gene, complete cds Length = 200028 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 393 ccaaatatttccaggagtttga 414 |||||||||||||||||||||| Sbjct: 126284 ccaaatatttccaggagtttga 126263
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 52 ggtccggtccggttttttaaactagg 77 ||||||||||||||||||| |||||| Sbjct: 14879330 ggtccggtccggttttttacactagg 14879355 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 tccggtccggttttttaaactagg 77 ||||||||||||||||| |||||| Sbjct: 12888657 tccggtccggttttttacactagg 12888680
>gb|AC007100.3| Homo sapiens BAC clone RP11-462D13 from 2, complete sequence Length = 210344 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 161 gatgtgaaacagtagcacacag 182 |||||||||||||||||||||| Sbjct: 160613 gatgtgaaacagtagcacacag 160592
>dbj|AP003856.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0697D09 Length = 158479 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 52 ggtccggtccggttttttaaactagg 77 ||||||||||||||||||| |||||| Sbjct: 64156 ggtccggtccggttttttacactagg 64181
>dbj|AP003021.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503E05 Length = 168258 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 52 ggtccggtccggttttttaaactagg 77 ||||||||||||||||||| |||||| Sbjct: 115374 ggtccggtccggttttttacactagg 115399
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 Length = 1457619 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 439 aagtagaaaaaataaccttcac 460 |||||||||||||||||||||| Sbjct: 336539 aagtagaaaaaataaccttcac 336518
>gb|AC164634.3| Mus musculus BAC clone RP23-64E16 from chromosome 17, complete sequence Length = 204253 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 acaagaacagaaaagaaaaca 275 ||||||||||||||||||||| Sbjct: 2409 acaagaacagaaaagaaaaca 2389
>gb|AC146484.3| Pan troglodytes BAC clone CH251-454A18 from Y, complete sequence Length = 205077 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 251 tcacacaagaacagaaaagaaaaca 275 |||||||||||||||||| |||||| Sbjct: 64171 tcacacaagaacagaaaacaaaaca 64147
>gb|AC005287.4| Arabidopsis thaliana chromosome I BAC F20D21 genomic sequence, complete sequence Length = 143186 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 251 tcacacaagaacagaaaagaaaacaactt 279 ||||||||||| ||||||||||| ||||| Sbjct: 55651 tcacacaagaaaagaaaagaaaaaaactt 55623
>gb|AC084386.2| Mus musculus BAC clone RP23-61O2 from 17, complete sequence Length = 209523 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 acaagaacagaaaagaaaaca 275 ||||||||||||||||||||| Sbjct: 25194 acaagaacagaaaagaaaaca 25214
>gb|AC102790.7| Mus musculus chromosome 19, clone RP23-321D22, complete sequence Length = 242249 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 aaaaataaccttcacatgtaa 466 ||||||||||||||||||||| Sbjct: 85235 aaaaataaccttcacatgtaa 85255
>gb|AC150977.12| Medicago truncatula clone mth2-32m9, complete sequence Length = 125772 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 cggtccggtccggttttttaaacta 75 |||||||||||||||||| |||||| Sbjct: 76479 cggtccggtccggtttttaaaacta 76503
>gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete sequence Length = 137979 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 cggtccggtccggttttttaaacta 75 |||||||||||||||||| |||||| Sbjct: 37185 cggtccggtccggtttttaaaacta 37161
>emb|AL035468.3|HS424E5 Human DNA sequence from clone RP3-424E5 on chromosome 6q13-14.3, complete sequence Length = 93805 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 437 agaagtagaaaaaataacctt 457 ||||||||||||||||||||| Sbjct: 69870 agaagtagaaaaaataacctt 69850
>dbj|BS000678.1| Pan troglodytes chromosome Y clone: PTB-448K11, complete sequence Length = 195684 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 253 acacaagaacagaaaagaaaacaac 277 |||||||||||||||| |||||||| Sbjct: 115619 acacaagaacagaaaacaaaacaac 115643
>dbj|BS000682.1| Pan troglodytes chromosome Y clone: PTB-178C02, complete sequence Length = 222422 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 253 acacaagaacagaaaagaaaacaac 277 |||||||||||||||| |||||||| Sbjct: 117510 acacaagaacagaaaacaaaacaac 117534
>dbj|BS000561.1| Pan troglodytes chromosome Y clone:PTB-495J17, complete sequences Length = 130326 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 tcacacaagaacagaaaagaaaaca 275 |||||||||||||||||| |||||| Sbjct: 31942 tcacacaagaacagaaaacaaaaca 31966
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 251 tcacacaagaacagaaaagaaaaca 275 |||||||||||||||||| |||||| Sbjct: 23091151 tcacacaagaacagaaaacaaaaca 23091127 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 253 acacaagaacagaaaagaaaacaac 277 |||||||||||||||| |||||||| Sbjct: 12731398 acacaagaacagaaaacaaaacaac 12731374 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 253 acacaagaacagaaaagaaaacaac 277 |||||||||||||||| |||||||| Sbjct: 5167197 acacaagaacagaaaacaaaacaac 5167221 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 253 acacaagaacagaaaagaaaacaac 277 |||||||||||||||| |||||||| Sbjct: 1511966 acacaagaacagaaaacaaaacaac 1511990
>gb|AC144656.12| Medicago truncatula clone mth2-27d4, complete sequence Length = 102057 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 cggtccggtccggttttttaaacta 75 |||||||||||||||||| |||||| Sbjct: 95067 cggtccggtccggtttttaaaacta 95043
>gb|AC100782.2| Homo sapiens, clone RP11-300E4, complete sequence Length = 185123 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 aagaacagaaaagaaaacaac 277 ||||||||||||||||||||| Sbjct: 89276 aagaacagaaaagaaaacaac 89296
>gb|AC158464.2| Medicago truncatula chromosome 2 BAC clone mth2-145m24, complete sequence Length = 89051 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 cggtccggtccggttttttaaacta 75 |||||||||||||||||| |||||| Sbjct: 87898 cggtccggtccggtttttaaaacta 87922
>gb|AC159024.2| Pan troglodytes BAC clone CH251-479P21 from chromosome y, complete sequence Length = 186141 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 253 acacaagaacagaaaagaaaacaac 277 |||||||||||||||| |||||||| Sbjct: 99224 acacaagaacagaaaacaaaacaac 99200
>gb|AC155160.4| Mus musculus BAC clone RP24-510B6 from chromosome 17, complete sequence Length = 208376 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 acaagaacagaaaagaaaaca 275 ||||||||||||||||||||| Sbjct: 159611 acaagaacagaaaagaaaaca 159591
>gb|AC154111.2| Pan troglodytes BAC clone CH251-110D7 from chromosome y, complete sequence Length = 185601 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 253 acacaagaacagaaaagaaaacaac 277 |||||||||||||||| |||||||| Sbjct: 60107 acacaagaacagaaaacaaaacaac 60083
>gb|AC151056.2| Pan troglodytes BAC clone CH251-310D9 from chromosome y, complete sequence Length = 135628 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 253 acacaagaacagaaaagaaaacaac 277 |||||||||||||||| |||||||| Sbjct: 8985 acacaagaacagaaaacaaaacaac 9009
>gb|AC138080.4| Homo sapiens chromosome 8, clone RP11-1147M13, complete sequence Length = 164872 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 265 aaaagaaaacaacttcacactgaag 289 ||||||||||||||| ||||||||| Sbjct: 77092 aaaagaaaacaactttacactgaag 77068
>gb|AC007077.2| Homo sapiens BAC clone RP11-260K8 from 2, complete sequence Length = 182019 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 251 tcacacaagaacagaaaagaaaaca 275 ||||||||||||||||||| ||||| Sbjct: 178100 tcacacaagaacagaaaagtaaaca 178076
>gb|AC012068.5|AC012068 Homo sapiens BAC clone RP11-196J6 from Y, complete sequence Length = 166516 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 tcacacaagaacagaaaagaaaaca 275 |||||||||||||||||| |||||| Sbjct: 86000 tcacacaagaacagaaaacaaaaca 86024
>gb|AF281857.1|AF281857 Sin Nombre hantavirus strain SN 77734 segment M glycoprotein precursor, mRNA, partial cds Length = 402 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 429 gtcctgtcagaagtagaaaaaataa 453 ||||||| ||||||||||||||||| Sbjct: 171 gtcctgttagaagtagaaaaaataa 195
>gb|AF281854.1|AF281854 Sin Nombre hantavirus strain SN 77734 segment M glycoprotein precursor, mRNA, partial cds Length = 430 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 429 gtcctgtcagaagtagaaaaaataa 453 ||||||| ||||||||||||||||| Sbjct: 198 gtcctgttagaagtagaaaaaataa 222
>gb|AC170923.3| Pan troglodytes BAC clone CH251-394N14 from chromosome y, complete sequence Length = 176129 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 253 acacaagaacagaaaagaaaacaac 277 |||||||||||||||| |||||||| Sbjct: 1155 acacaagaacagaaaacaaaacaac 1131
>gb|AC163729.5| Pan troglodytes BAC clone CH251-1018P19 from chromosome y, complete sequence Length = 196073 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 253 acacaagaacagaaaagaaaacaac 277 |||||||||||||||| |||||||| Sbjct: 188768 acacaagaacagaaaacaaaacaac 188744
>dbj|AP006250.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-632H17, complete sequence Length = 197556 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 265 aaaagaaaacaacttcacactgaag 289 ||||||||||||||| ||||||||| Sbjct: 14321 aaaagaaaacaactttacactgaag 14297
>dbj|AP006245.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-139F9, complete sequence Length = 155586 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 265 aaaagaaaacaacttcacactgaag 289 ||||||||||||||| ||||||||| Sbjct: 147850 aaaagaaaacaactttacactgaag 147826
>gb|L37903.1|HPSGPGO Sin Nombre virus (NM R11) RNA M segment encoding surface glycoproteins (G1 and G2 proteins), complete cds Length = 3696 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 429 gtcctgtcagaagtagaaaaaataa 453 ||||||||||||||||||| ||||| Sbjct: 3440 gtcctgtcagaagtagaaagaataa 3464
>gb|L25783.1|HPSMSEG Sin Nombre virus M segment glycoprotein precursor gene (GPC), complete cds Length = 3696 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 429 gtcctgtcagaagtagaaaaaataa 453 ||||||||||||||||||| ||||| Sbjct: 3440 gtcctgtcagaagtagaaagaataa 3464
>dbj|AP000079.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 15/19, complete sequence Length = 100000 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 265 aaaagaaaacaacttcacactgaag 289 ||||||||||||||| ||||||||| Sbjct: 7840 aaaagaaaacaactttacactgaag 7864
>emb|AL806534.3| Mouse DNA sequence from clone RP23-334A11 on chromosome X, complete sequence Length = 130689 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 424 tttaggtcctgtcagaagtagaaaa 448 ||||||| ||||||||||||||||| Sbjct: 60594 tttaggtactgtcagaagtagaaaa 60618
>gb|AC121298.10| Mus musculus chromosome 5, clone RP23-377E6, complete sequence Length = 194045 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tttgattcccatagtttagg 429 |||||||||||||||||||| Sbjct: 78551 tttgattcccatagtttagg 78570
>gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0024A05, complete sequence Length = 82985 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tcggtccggtccggtttttt 69 |||||||||||||||||||| Sbjct: 29067 tcggtccggtccggtttttt 29086
>ref|XM_430128.1| PREDICTED: Gallus gallus LOC424137 (LOC424137), mRNA Length = 862 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 aagaacagaaaagaaaacaa 276 |||||||||||||||||||| Sbjct: 116 aagaacagaaaagaaaacaa 135
>ref|XM_416890.1| PREDICTED: Gallus gallus similar to 2010300C02Rik protein (LOC418694), mRNA Length = 2448 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 tcttcactcaacttctcatt 642 |||||||||||||||||||| Sbjct: 1043 tcttcactcaacttctcatt 1024
>gb|AC091262.8| Mus musculus chromosome 9, clone RP23-38G1, complete sequence Length = 157984 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 aagaacagaaaagaaaacaacttc 280 ||||| |||||||||||||||||| Sbjct: 57860 aagaaaagaaaagaaaacaacttc 57883
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 ggtccggtccggttttttaaacta 75 |||||||||||||||||| ||||| Sbjct: 19016934 ggtccggtccggtttttttaacta 19016911
>gb|AY212940.1| Solanum tuberosum clone StVe1-02k Ve resistance gene-like protein gene, partial cds Length = 851 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 acttcacactgaagatttcc 295 |||||||||||||||||||| Sbjct: 142 acttcacactgaagatttcc 123
>gb|AY212938.1| Solanum tuberosum clone StVe1-02i Ve resistance gene-like protein gene, partial cds Length = 851 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 acttcacactgaagatttcc 295 |||||||||||||||||||| Sbjct: 142 acttcacactgaagatttcc 123
>gb|AF466617.1| Solanum tuberosum clone StVe1-02e Ve resistance gene analog gene, partial cds Length = 839 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 acttcacactgaagatttcc 295 |||||||||||||||||||| Sbjct: 142 acttcacactgaagatttcc 123
>gb|AC135597.5| Oryza sativa chromosome 3 BAC OSJNBa0034E08 genomic sequence, complete sequence Length = 171437 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 ggtccggtccggttttttaaacta 75 |||||||||||||||||| ||||| Sbjct: 140643 ggtccggtccggtttttttaacta 140666
>gb|AC110090.6| Mus musculus BAC clone RP23-27L4 from chromosome 1, complete sequence Length = 218518 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gccaccacaccgcaccatag 231 |||||||||||||||||||| Sbjct: 111476 gccaccacaccgcaccatag 111457
>gb|AY262016.1| Solanum lycopersicoides resistance protein SlVe1 precursor, gene, complete cds Length = 3400 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 acttcacactgaagatttcc 295 |||||||||||||||||||| Sbjct: 2391 acttcacactgaagatttcc 2372
>gb|AY262015.1| Solanum lycopersicoides resistance protein SlVe1 precursor, mRNA, complete cds Length = 3422 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 acttcacactgaagatttcc 295 |||||||||||||||||||| Sbjct: 2391 acttcacactgaagatttcc 2372
>gb|AC122817.3| Mus musculus BAC clone RP23-241M6 from 16, complete sequence Length = 185702 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tatatatattacagtcaact 202 |||||||||||||||||||| Sbjct: 118684 tatatatattacagtcaact 118665
>emb|AL355384.6| Human DNA sequence from clone RP11-626C11 on chromosome 10 Contains a CpG island, complete sequence Length = 159305 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 caagaacagaaaagaaaaca 275 |||||||||||||||||||| Sbjct: 34473 caagaacagaaaagaaaaca 34492
>emb|AL049767.12|HSJ172H20 Human DNA sequence from clone RP1-172H20 on chromosome 20q12-13.12 Contains the PI3 gene for skin-derived protease inhibitor 3 (SKALP)the SEMG1 gene for semenogelin I, the SEMG2 gene for semenogelin II, complete sequence Length = 99747 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 cacaagaacagaaaagaaaa 273 |||||||||||||||||||| Sbjct: 45506 cacaagaacagaaaagaaaa 45525
>gb|BC009668.1| Mus musculus dedicator of cyto-kinesis 1, mRNA (cDNA clone IMAGE:3493084), partial cds Length = 3363 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 388 agaaaccaaatatttccaggagtt 411 ||||| |||||||||||||||||| Sbjct: 3106 agaaaacaaatatttccaggagtt 3083
>gb|AC159300.3| Mus musculus BAC clone RP23-242D23 from chromosome 6, complete sequence Length = 200738 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 gaacagaaaagaaaacaact 278 |||||||||||||||||||| Sbjct: 64823 gaacagaaaagaaaacaact 64804
>gb|AC166247.3| Mus musculus BAC RP23-426E9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 191393 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 gagtttgattcccatagttt 426 |||||||||||||||||||| Sbjct: 161966 gagtttgattcccatagttt 161985
>emb|BX470267.5| Zebrafish DNA sequence from clone DKEY-98H23, complete sequence Length = 182303 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 atgtgaaacagtagcacaca 181 |||||||||||||||||||| Sbjct: 29688 atgtgaaacagtagcacaca 29707
>gb|AC093181.5| Oryza sativa chromosome 10 BAC OSJNBb0089F16 genomic sequence, complete sequence Length = 154696 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 cggtccggtccggtttttta 70 |||||||||||||||||||| Sbjct: 42184 cggtccggtccggtttttta 42165
>gb|AC007048.5| Arabidopsis thaliana chromosome 2 clone F23N11 map mi148, complete sequence Length = 61384 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 aagaacagaaaagaaaacaa 276 |||||||||||||||||||| Sbjct: 24054 aagaacagaaaagaaaacaa 24035
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 cggtccggtccggtttttta 70 |||||||||||||||||||| Sbjct: 2544847 cggtccggtccggtttttta 2544828
>emb|BX511107.3| Zebrafish DNA sequence from clone CH211-117I13 in linkage group 23, complete sequence Length = 165497 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 atgtgaaacagtagcacaca 181 |||||||||||||||||||| Sbjct: 102818 atgtgaaacagtagcacaca 102837
>emb|AL626778.12| Mouse DNA sequence from clone RP23-326E2 on chromosome 4, complete sequence Length = 186208 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 aagaacagaaaagaaaacaa 276 |||||||||||||||||||| Sbjct: 36497 aagaacagaaaagaaaacaa 36516
>emb|BX321869.7| Zebrafish DNA sequence from clone CH211-265B24, complete sequence Length = 146012 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 catatctctgttcagtattt 378 |||||||||||||||||||| Sbjct: 100337 catatctctgttcagtattt 100318
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 tcggtccggtccggtttttt 69 |||||||||||||||||||| Sbjct: 12884623 tcggtccggtccggtttttt 12884604
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 ggtccggtccggttttttaaacta 75 |||||||||||||||||| ||||| Sbjct: 19010975 ggtccggtccggtttttttaacta 19010952
>gb|AC124832.9| Mus musculus chromosome 1, clone RP23-294B11, complete sequence Length = 194905 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 aagaacagaaaagaaaacaa 276 |||||||||||||||||||| Sbjct: 151877 aagaacagaaaagaaaacaa 151896
>gb|AC156280.5| Mus musculus 6 BAC RP24-314B4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 194695 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 gagtttgattcccatagttt 426 |||||||||||||||||||| Sbjct: 91221 gagtttgattcccatagttt 91240
>gb|AC091719.3| Pan troglodytes clone RP43-26K2, complete sequence Length = 189864 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 aaaaataaccttcacatgta 465 |||||||||||||||||||| Sbjct: 162382 aaaaataaccttcacatgta 162401
>gb|AC008151.1| Homo sapiens 3 BAC CITB-243A6 (California Institute of Technology BAC Library) complete sequence Length = 178242 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 attcccatagtttaggtcct 433 |||||||||||||||||||| Sbjct: 144366 attcccatagtttaggtcct 144385
>gb|AC026161.4|AC026161 Homo sapiens chromosome 3 clone RP11-105K13 map 3p, complete sequence Length = 167579 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 attcccatagtttaggtcct 433 |||||||||||||||||||| Sbjct: 151213 attcccatagtttaggtcct 151194
>gb|AC091951.3| Homo sapiens chromosome 5 clone RP11-404K5, complete sequence Length = 160174 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 aacagaaaagaaaacaactt 279 |||||||||||||||||||| Sbjct: 158312 aacagaaaagaaaacaactt 158331
>dbj|AP003537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1140D12 Length = 139301 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 tccggtccggttttttaaactagg 77 ||||||||||||||||| |||||| Sbjct: 40098 tccggtccggttttttacactagg 40121
>dbj|AP006480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1052H09 Length = 190806 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 tcggtccggtccggtttttt 69 |||||||||||||||||||| Sbjct: 21603 tcggtccggtccggtttttt 21584
>dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0061E21 Length = 155085 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 tcggtccggtccggtttttt 69 |||||||||||||||||||| Sbjct: 85141 tcggtccggtccggtttttt 85122
>gb|AC004976.1|AC004976 Homo sapiens PAC clone RP5-1143H19 from 7p14-p15, complete sequence Length = 127425 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 aaaaataaccttcacatgta 465 |||||||||||||||||||| Sbjct: 1385 aaaaataaccttcacatgta 1404
>emb|BX469928.8| Zebrafish DNA sequence from clone DKEYP-47C5 in linkage group 22, complete sequence Length = 141594 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 ttctttcggtccggtccggttttt 68 |||||| ||||||||||||||||| Sbjct: 79765 ttctttgggtccggtccggttttt 79742
>gb|AF060568.1|AF060568 Homo sapiens promyelocytic leukemia zinc finger protein (PLZF) gene, complete cds Length = 201239 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 aagaacagaaaagaaaacaa 276 |||||||||||||||||||| Sbjct: 28184 aagaacagaaaagaaaacaa 28203
>emb|CT025880.13| Mouse DNA sequence from clone RP23-266N10 on chromosome 17, complete sequence Length = 147733 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 aagaacagaaaagaaaacaa 276 |||||||||||||||||||| Sbjct: 100299 aagaacagaaaagaaaacaa 100280
>emb|CT030740.8| Mouse DNA sequence from clone RP24-312D7 on chromosome 17, complete sequence Length = 215154 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 161 gatgtgaaacagtagcacacagtatata 188 ||||||||||| ||||||| |||||||| Sbjct: 53715 gatgtgaaacactagcacaaagtatata 53742
>gb|AC091332.8| Mus musculus chromosome 17, clone RP23-12K1, complete sequence Length = 216370 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 161 gatgtgaaacagtagcacacagtatata 188 ||||||||||| ||||||| |||||||| Sbjct: 177517 gatgtgaaacactagcacaaagtatata 177544
>dbj|AP000908.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-711K22, complete sequence Length = 149132 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 aagaacagaaaagaaaacaa 276 |||||||||||||||||||| Sbjct: 130209 aagaacagaaaagaaaacaa 130228
>gb|AC141641.4| Mus musculus BAC clone RP23-336M12 from 8, complete sequence Length = 184896 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 aatgatgtgaaacagtagca 177 |||||||||||||||||||| Sbjct: 87954 aatgatgtgaaacagtagca 87973
>gb|AC002546.1|AC002546 Homo sapiens chromosome 17, clone 193h18, complete sequence Length = 106420 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 437 agaagtagaaaaaataaccttcacatgt 464 |||||| || |||||||||||||||||| Sbjct: 97077 agaagtggataaaataaccttcacatgt 97050
>gb|AC152508.3| Tribolium castaneum BAC T.cast_C29K22 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 143678 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gcacacagtatatatattac 194 |||||||||||||||||||| Sbjct: 105617 gcacacagtatatatattac 105636
>emb|AL807399.5| Mouse DNA sequence from clone RP23-382O11 on chromosome 4, complete sequence Length = 181004 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ttgaagagggcaactatacc 315 |||||||||||||||||||| Sbjct: 19661 ttgaagagggcaactatacc 19642
>emb|AL671963.9| Mouse DNA sequence from clone RP23-35L3 on chromosome X, complete sequence Length = 200688 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 agaacagaaaagaaaacaacttca 281 |||||||||||||||| ||||||| Sbjct: 88718 agaacagaaaagaaaaaaacttca 88741
>gb|AC091889.3| Homo sapiens chromosome 5 clone RP11-122F24, complete sequence Length = 154397 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 aacagaaaagaaaacaactt 279 |||||||||||||||||||| Sbjct: 54058 aacagaaaagaaaacaactt 54077 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,255,382 Number of Sequences: 3902068 Number of extensions: 7255382 Number of successful extensions: 146362 Number of sequences better than 10.0: 105 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145414 Number of HSP's gapped (non-prelim): 948 length of query: 649 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 626 effective length of database: 17,143,297,704 effective search space: 10731704362704 effective search space used: 10731704362704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
