ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13o05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, par... 1354 0.0
2ref|XM_475910.1| Oryza sativa (japonica cultivar-group), predic... 157 6e-35
3gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 157 6e-35
4gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome... 157 6e-35
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
6dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 6e-35
7ref|NM_192393.1| Oryza sativa (japonica cultivar-group), predic... 78 4e-11
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
9dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
10ref|XM_475909.1| Oryza sativa (japonica cultivar-group), predic... 62 3e-06
11ref|NM_192379.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
12dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
13dbj|AK102737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
14ref|XM_470493.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.4
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.4
16gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 42 2.4
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
18dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
19dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
20gb|AC166821.2| Mus musculus BAC clone RP24-68F22 from chromosome... 40 9.5
21ref|NM_192374.1| Oryza sativa (japonica cultivar-group), predic... 40 9.5
22ref|NM_192373.1| Oryza sativa (japonica cultivar-group), predic... 40 9.5
23gb|AE009347.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 9.5
24gb|AE008266.2| Agrobacterium tumefaciens str. C58 linear chromos... 40 9.5
25gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 9.5
26gb|BC058054.1| Danio rerio hypothetical protein LOC402860, mRNA ... 40 9.5
27gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosom... 40 9.5
28gb|BC096809.1| Danio rerio im:7152114, mRNA (cDNA clone MGC:1104... 40 9.5
29emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chr... 40 9.5
30gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 9.5
31emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on ch... 40 9.5
32ref|NM_001030074.1| Danio rerio im:7152114 (im:7152114), mRNA 40 9.5
33emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on ch... 40 9.5
34gb|AF403051.1|AF403051 Pseudorabies virus strain Fa glycoprotein... 40 9.5
35tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 40 9.5
36gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, comple... 40 9.5
37gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 9.5
38emb|CR933839.10| Zebrafish DNA sequence from clone DKEY-244A7 in... 40 9.5
39gb|AF158090.1|AF158090 Pseudorabies virus glycoprotein C (gC) ge... 40 9.5
40emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15,... 40 9.5
41gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 9.5
42gb|M12778.1|SH1GGIII Pseudorabies virus (PRV) glycoprotein gIII ... 40 9.5
43dbj|D49437.1|SH1GGIII3 Pseudorabies virus DNA for glycoprotein g... 40 9.5
44dbj|D49436.1|SH1GGIII2 Pseudorabies virus DNA for glycoprotein g... 40 9.5
45dbj|D49435.1|SH1GGIII1 Pseudorabies virus DNA for glycoprotein g... 40 9.5 
>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence
          Length = 779

 Score = 1354 bits (683), Expect = 0.0
 Identities = 690/691 (99%), Gaps = 1/691 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtcgctcatgcatagtgtatattgttggaaacattcacttattttgcataaaatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgtgtcgctcatgcatagtgtatattgttggaaacattcacttattttgcataaaatggg 690

                                                                       
Query: 61  aaatatactaggaacggtcgacaaaccgtaagccgttatttagaacctcggtcttggcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aaatatactaggaacggtcgacaaaccgtaagccgttatttagaacctcggtcttggcaa 630

                                                                       
Query: 121 cgagcacagcgccgtgaatcacatcaacgcccactctcctcctagtgaatggccgatgcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cgagcacagcgccgtgaatcacatcaacgcccactctcctcctagtgaatggccgatgcg 570

                                                                       
Query: 181 agtaacttaacttagatgtgcttgaagtcctggagcgtccatcgcccatctccccccttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agtaacttaacttagatgtgcttgaagtcctggagcgtccatcgcccatctccccccttg 510

                                                                       
Query: 241 accatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccgcgagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 accatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccgcgagc 450

                                                                       
Query: 301 gcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccg 390

                                                                       
Query: 361 gcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcgtcccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcgtcccc 330

                                                                       
Query: 421 accgtggccggcacacgcaggtacggcgaccggattgtcgttatggtcagctgcacggcc 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 a-cgtggccggcacacgcaggtacggcgaccggattgtcgttatggtcagctgcacggcc 271

                                                                       
Query: 481 acgtccacgtaccccagaggtgggtacaggggcacgacgtcgccaacgttctgcacatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acgtccacgtaccccagaggtgggtacaggggcacgacgtcgccaacgttctgcacatgc 211

                                                                       
Query: 541 agcgccttgaggtctggaaacgagtggaacgccgacctgaagaagcggcacccgacgtgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 agcgccttgaggtctggaaacgagtggaacgccgacctgaagaagcggcacccgacgtgg 151

                                                                       
Query: 601 gggctcgcgaacacgatggctgtcacggggaaggatttggtggcgccttcgggcttgttg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gggctcgcgaacacgatggctgtcacggggaaggatttggtggcgccttcgggcttgttg 91

                                          
Query: 661 atgccgctagacaccatgtcaacggcgttca 691
           |||||||||||||||||||||||||||||||
Sbjct: 90  atgccgctagacaccatgtcaacggcgttca 60
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>ref|XM_475910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1224

 Score =  157 bits (79), Expect = 6e-35
 Identities = 313/391 (80%)
 Strand = Plus / Minus

                                                                        
Query: 236  ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 295
            ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 1180 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 1121

                                                                        
Query: 296  cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 355
             |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 1120 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 1061

                                                                        
Query: 356  ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 415
            | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 1060 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 1001

                                                                        
Query: 416  tccccaccgtggccggcacacgcaggtacggcgaccggattgtcgttatggtcagctgca 475
            || | |  ||  |||||   |||||||||||||||||| | ||  | |||  ||||| ||
Sbjct: 1000 tctcgatggtccccggcgaccgcaggtacggcgaccggctggtgctgatgcgcagcttca 941

                                                                        
Query: 476  cggccacgtccacgtaccccagaggtgggtacaggggcacgacgtcgccaacgttctgca 535
            |||||||||||||||| ||||| || ||||||| |||||| ||||||||  ||||||  |
Sbjct: 940  cggccacgtccacgtagcccagcggcgggtacatgggcaccacgtcgccggcgttcttga 881

                                                                        
Query: 536  catgcagcgccttgaggtctggaaacgagtggaacgccgacctgaagaagcggcacccga 595
            | || |||||| | ||||| || |||||   |||||| | | ||||||||| |   || |
Sbjct: 880  cgtggagcgccctcaggtcggggaacgacgcgaacgctgccttgaagaagccgtcgccca 821

                                           
Query: 596  cgtgggggctcgcgaacacgatggctgtcac 626
            || | ||||||||||||||||| || |||||
Sbjct: 820  cgcgcgggctcgcgaacacgatcgccgtcac 790
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>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score =  157 bits (79), Expect = 6e-35
 Identities = 313/391 (80%)
 Strand = Plus / Plus

                                                                          
Query: 236    ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 295
              ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 163111 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 163170

                                                                          
Query: 296    cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 355
               |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 163171 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 163230

                                                                          
Query: 356    ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 415
              | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 163231 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 163290

                                                                          
Query: 416    tccccaccgtggccggcacacgcaggtacggcgaccggattgtcgttatggtcagctgca 475
              || | |  ||  |||||   |||||||||||||||||| | ||  | |||  ||||| ||
Sbjct: 163291 tctcgatggtccccggcgaccgcaggtacggcgaccggctggtgctgatgcgcagcttca 163350

                                                                          
Query: 476    cggccacgtccacgtaccccagaggtgggtacaggggcacgacgtcgccaacgttctgca 535
              |||||||||||||||| ||||| || ||||||| |||||| ||||||||  ||||||  |
Sbjct: 163351 cggccacgtccacgtagcccagcggcgggtacatgggcaccacgtcgccggcgttcttga 163410

                                                                          
Query: 536    catgcagcgccttgaggtctggaaacgagtggaacgccgacctgaagaagcggcacccga 595
              | || |||||| | ||||| || |||||   |||||| | | ||||||||| |   || |
Sbjct: 163411 cgtggagcgccctcaggtcggggaacgacgcgaacgctgccttgaagaagccgtcgccca 163470

                                             
Query: 596    cgtgggggctcgcgaacacgatggctgtcac 626
              || | ||||||||||||||||| || |||||
Sbjct: 163471 cgcgcgggctcgcgaacacgatcgccgtcac 163501



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                 
Query: 376    ccggccaccccgtgcaggtagcactcgaggttgtg 410
              |||||||| ||||||||||||||||||||||||||
Sbjct: 162599 ccggccacgccgtgcaggtagcactcgaggttgtg 162565
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>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08,
             complete sequence
          Length = 119500

 Score =  157 bits (79), Expect = 6e-35
 Identities = 313/391 (80%)
 Strand = Plus / Plus

                                                                         
Query: 236   ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 295
             ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 13793 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 13852

                                                                         
Query: 296   cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 355
              |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 13853 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 13912

                                                                         
Query: 356   ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 415
             | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 13913 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 13972

                                                                         
Query: 416   tccccaccgtggccggcacacgcaggtacggcgaccggattgtcgttatggtcagctgca 475
             || | |  ||  |||||   |||||||||||||||||| | ||  | |||  ||||| ||
Sbjct: 13973 tctcgatggtccccggcgaccgcaggtacggcgaccggctggtgctgatgcgcagcttca 14032

                                                                         
Query: 476   cggccacgtccacgtaccccagaggtgggtacaggggcacgacgtcgccaacgttctgca 535
             |||||||||||||||| ||||| || ||||||| |||||| ||||||||  ||||||  |
Sbjct: 14033 cggccacgtccacgtagcccagcggcgggtacatgggcaccacgtcgccggcgttcttga 14092

                                                                         
Query: 536   catgcagcgccttgaggtctggaaacgagtggaacgccgacctgaagaagcggcacccga 595
             | || |||||| | ||||| || |||||   |||||| | | ||||||||| |   || |
Sbjct: 14093 cgtggagcgccctcaggtcggggaacgacgcgaacgctgccttgaagaagccgtcgccca 14152

                                            
Query: 596   cgtgggggctcgcgaacacgatggctgtcac 626
             || | ||||||||||||||||| || |||||
Sbjct: 14153 cgcgcgggctcgcgaacacgatcgccgtcac 14183



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                
Query: 376   ccggccaccccgtgcaggtagcactcgaggttgtg 410
             |||||||| ||||||||||||||||||||||||||
Sbjct: 13281 ccggccacgccgtgcaggtagcactcgaggttgtg 13247
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  157 bits (79), Expect = 6e-35
 Identities = 313/391 (80%)
 Strand = Plus / Plus

                                                                            
Query: 236      ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 295
                ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 28378869 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 28378928

                                                                            
Query: 296      cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 355
                 |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 28378929 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 28378988

                                                                            
Query: 356      ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 415
                | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 28378989 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 28379048

                                                                            
Query: 416      tccccaccgtggccggcacacgcaggtacggcgaccggattgtcgttatggtcagctgca 475
                || | |  ||  |||||   |||||||||||||||||| | ||  | |||  ||||| ||
Sbjct: 28379049 tctcgatggtccccggcgaccgcaggtacggcgaccggctggtgctgatgcgcagcttca 28379108

                                                                            
Query: 476      cggccacgtccacgtaccccagaggtgggtacaggggcacgacgtcgccaacgttctgca 535
                |||||||||||||||| ||||| || ||||||| |||||| ||||||||  ||||||  |
Sbjct: 28379109 cggccacgtccacgtagcccagcggcgggtacatgggcaccacgtcgccggcgttcttga 28379168

                                                                            
Query: 536      catgcagcgccttgaggtctggaaacgagtggaacgccgacctgaagaagcggcacccga 595
                | || |||||| | ||||| || |||||   |||||| | | ||||||||| |   || |
Sbjct: 28379169 cgtggagcgccctcaggtcggggaacgacgcgaacgctgccttgaagaagccgtcgccca 28379228

                                               
Query: 596      cgtgggggctcgcgaacacgatggctgtcac 626
                || | ||||||||||||||||| || |||||
Sbjct: 28379229 cgcgcgggctcgcgaacacgatcgccgtcac 28379259



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 376      ccggccaccccgtgcaggtagcactcgaggttgtg 410
                |||||||| ||||||||||||||||||||||||||
Sbjct: 28378357 ccggccacgccgtgcaggtagcactcgaggttgtg 28378323
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>dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E01, full
            insert sequence
          Length = 1526

 Score =  157 bits (79), Expect = 6e-35
 Identities = 313/391 (80%)
 Strand = Plus / Minus

                                                                        
Query: 236  ccttgaccatgaacttgtgcttcggcacccaccagctcgccggcaccgggtgctcgtccg 295
            ||||||||||| || ||| ||| |  |||||||| |  | |||||| |||| || |||| 
Sbjct: 1264 ccttgaccatgcacctgttcttggagacccaccaccggggcggcacggggtacttgtcct 1205

                                                                        
Query: 296  cgagcgcatcggcacccttgttcaccagcgctatgtcacggtccacctcgagcttgaacc 355
             |||||| ||| | ||||||||| ||||||| | ||| ||||| ||||| ||||||||||
Sbjct: 1204 tgagcgcgtcgacgcccttgttcgccagcgcgacgtcgcggtcgacctccagcttgaacc 1145

                                                                        
Query: 356  ctccggcactgccctgctccccggccaccccgtgcaggtagcactcgaggttgtggagcg 415
            | ||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||
Sbjct: 1144 cgccggcgctgccctgctcgccggcgacgccgtggaggtagcactcgaggttgtgcagcg 1085

                                                                        
Query: 416  tccccaccgtggccggcacacgcaggtacggcgaccggattgtcgttatggtcagctgca 475
            || | |  ||  |||||   |||||||||||||||||| | ||  | |||  ||||| ||
Sbjct: 1084 tctcgatggtccccggcgaccgcaggtacggcgaccggctggtgctgatgcgcagcttca 1025

                                                                        
Query: 476  cggccacgtccacgtaccccagaggtgggtacaggggcacgacgtcgccaacgttctgca 535
            |||||||||||||||| ||||| || ||||||| |||||| ||||||||  ||||||  |
Sbjct: 1024 cggccacgtccacgtagcccagcggcgggtacatgggcaccacgtcgccggcgttcttga 965

                                                                        
Query: 536  catgcagcgccttgaggtctggaaacgagtggaacgccgacctgaagaagcggcacccga 595
            | || |||||| | ||||| || |||||   |||||| | | ||||||||| |   || |
Sbjct: 964  cgtggagcgccctcaggtcggggaacgacgcgaacgctgccttgaagaagccgtcgccca 905

                                           
Query: 596  cgtgggggctcgcgaacacgatggctgtcac 626
            || | ||||||||||||||||| || |||||
Sbjct: 904  cgcgcgggctcgcgaacacgatcgccgtcac 874
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>ref|NM_192393.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1458

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 312  cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccggcactgccctg 371
            ||||||||||||||| | ||| ||||| ||||| ||||||||||| |||    |||||||
Sbjct: 1320 cttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctg 1261

                                                   
Query: 372  ctccccggccaccccgtgcaggtagcactcgaggttgtg 410
            | ||||||| || ||||||| ||||||||||||| ||||
Sbjct: 1260 cgccccggcgacgccgtgcatgtagcactcgaggctgtg 1222
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                            
Query: 312      cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccggcactgccctg 371
                ||||||||||||||| | ||| ||||| ||||| ||||||||||| |||    |||||||
Sbjct: 26377149 cttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctg 26377208

                                                       
Query: 372      ctccccggccaccccgtgcaggtagcactcgaggttgtg 410
                | ||||||| || ||||||| ||||||||||||| ||||
Sbjct: 26377209 cgccccggcgacgccgtgcatgtagcactcgaggctgtg 26377247



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                            
Query: 273      cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 332
                |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 26317752 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 26317693

                          
Query: 333      acggtccacc 342
                ||||||||||
Sbjct: 26317692 acggtccacc 26317683



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 386      cgtgcaggtagcactcgaggttgtg 410
                |||||||||||||||||||||||||
Sbjct: 26317633 cgtgcaggtagcactcgaggttgtg 26317609



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 375      cccggccaccccgtgcaggtagcactcgaggt 406
                |||||| || |||||||||| |||||||||||
Sbjct: 26295965 cccggcgacgccgtgcaggtggcactcgaggt 26295934



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                        
Query: 346      agcttgaaccctccggcactgccctgctccccggccaccccgtgcaggtagcactc 401
                |||||||||||||||   || ||||||  |||||| ||||| |||| |||||||||
Sbjct: 26291708 agcttgaaccctccgttgctcccctgcgtcccggcaaccccatgcatgtagcactc 26291653
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>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032K15
          Length = 126195

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                         
Query: 312   cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccctccggcactgccctg 371
             ||||||||||||||| | ||| ||||| ||||| ||||||||||| |||    |||||||
Sbjct: 51014 cttgttcaccagcgccacgtcccggtcgacctccagcttgaacccgccgcgcttgccctg 51073

                                                    
Query: 372   ctccccggccaccccgtgcaggtagcactcgaggttgtg 410
             | ||||||| || ||||||| ||||||||||||| ||||
Sbjct: 51074 cgccccggcgacgccgtgcatgtagcactcgaggctgtg 51112
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>ref|XM_475909.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1236

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 376  ccggccaccccgtgcaggtagcactcgaggttgtg 410
            |||||||| ||||||||||||||||||||||||||
Sbjct: 1034 ccggccacgccgtgcaggtagcactcgaggttgtg 1000
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>ref|NM_192379.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1263

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 332
            |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 1170 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 1111

                      
Query: 333  acggtccacc 342
            ||||||||||
Sbjct: 1110 acggtccacc 1101



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 386  cgtgcaggtagcactcgaggttgtg 410
            |||||||||||||||||||||||||
Sbjct: 1051 cgtgcaggtagcactcgaggttgtg 1027
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>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1159_D09
          Length = 147770

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                          
Query: 273    cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 332
              |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 130433 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 130374

                        
Query: 333    acggtccacc 342
              ||||||||||
Sbjct: 130373 acggtccacc 130364



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 386    cgtgcaggtagcactcgaggttgtg 410
              |||||||||||||||||||||||||
Sbjct: 130314 cgtgcaggtagcactcgaggttgtg 130290



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 375    cccggccaccccgtgcaggtagcactcgaggt 406
              |||||| || |||||||||| |||||||||||
Sbjct: 108646 cccggcgacgccgtgcaggtggcactcgaggt 108615



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                      
Query: 346    agcttgaaccctccggcactgccctgctccccggccaccccgtgcaggtagcactc 401
              |||||||||||||||   || ||||||  |||||| ||||| |||| |||||||||
Sbjct: 104389 agcttgaaccctccgttgctcccctgcgtcccggcaaccccatgcatgtagcactc 104334
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>dbj|AK102737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C14, full
            insert sequence
          Length = 1577

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  cgccggcaccgggtgctcgtccgcgagcgcatcggcacccttgttcaccagcgctatgtc 332
            |||||||||| ||| |||||||  |||||| ||  |  |||||||||||||||| | |||
Sbjct: 1302 cgccggcacctggtactcgtccctgagcgcgtccacttccttgttcaccagcgccaggtc 1243

                      
Query: 333  acggtccacc 342
            ||||||||||
Sbjct: 1242 acggtccacc 1233



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 386  cgtgcaggtagcactcgaggttgtg 410
            |||||||||||||||||||||||||
Sbjct: 1183 cgtgcaggtagcactcgaggttgtg 1159
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>ref|XM_470493.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1724

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 219 ccatcgcccatctcccccctt 239
           |||||||||||||||||||||
Sbjct: 176 ccatcgcccatctcccccctt 196
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 219      ccatcgcccatctcccccctt 239
                |||||||||||||||||||||
Sbjct: 35925005 ccatcgcccatctcccccctt 35925025
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>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 219   ccatcgcccatctcccccctt 239
             |||||||||||||||||||||
Sbjct: 36120 ccatcgcccatctcccccctt 36100
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 219      ccatcgcccatctcccccctt 239
                |||||||||||||||||||||
Sbjct: 36015135 ccatcgcccatctcccccctt 36015155
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>dbj|AK102968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115J18, full
           insert sequence
          Length = 1749

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 219 ccatcgcccatctcccccctt 239
           |||||||||||||||||||||
Sbjct: 196 ccatcgcccatctcccccctt 216
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>dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G02, full
           insert sequence
          Length = 705

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 312 cttgttcaccagcgctatgtcacggtccacctcgagcttgaaccc 356
           ||||||||||||| | | ||| ||||| ||||| |||||||||||
Sbjct: 409 cttgttcaccagctccacgtcccggtcgacctccagcttgaaccc 365
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>gb|AC166821.2| Mus musculus BAC clone RP24-68F22 from chromosome 17, complete sequence
          Length = 202649

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 408    gtggagcgtccccaccgtgg 427
              ||||||||||||||||||||
Sbjct: 103310 gtggagcgtccccaccgtgg 103291
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>ref|NM_192374.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1212

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 375  cccggccaccccgtgcaggtagcactcgaggt 406
            |||||| || |||||||||| |||||||||||
Sbjct: 1002 cccggcgacgccgtgcaggtggcactcgaggt 971
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>ref|NM_192373.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1197

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 346  agcttgaaccctccggcactgccctgctccccggccaccccgtgcaggtagcactc 401
            |||||||||||||||   || ||||||  |||||| ||||| |||| |||||||||
Sbjct: 1040 agcttgaaccctccgttgctcccctgcgtcccggcaaccccatgcatgtagcactc 985
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>gb|AE009347.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 117 of
            187 of the complete sequence
          Length = 12234

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 570  cgccgacctgaagaagcggc 589
            ||||||||||||||||||||
Sbjct: 8898 cgccgacctgaagaagcggc 8917
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>gb|AE008266.2| Agrobacterium tumefaciens str. C58 linear chromosome, section 70 of
            187 of the complete sequence
          Length = 11252

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 570  cgccgacctgaagaagcggc 589
            ||||||||||||||||||||
Sbjct: 3926 cgccgacctgaagaagcggc 3907
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 353    accctccggcactgccctgc 372
              ||||||||||||||||||||
Sbjct: 882978 accctccggcactgccctgc 882959
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>gb|BC058054.1| Danio rerio hypothetical protein LOC402860, mRNA (cDNA clone
           IMAGE:3815424), partial cds
          Length = 4004

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 672 caccatgtcaacggcgttca 691
           ||||||||||||||||||||
Sbjct: 23  caccatgtcaacggcgttca 42
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>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete
             sequence
          Length = 219818

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    attttgcataaaatgggaaa 63
             ||||||||||||||||||||
Sbjct: 73416 attttgcataaaatgggaaa 73435
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>gb|BC096809.1| Danio rerio im:7152114, mRNA (cDNA clone MGC:110418 IMAGE:7222736),
           complete cds
          Length = 1629

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 672 caccatgtcaacggcgttca 691
           ||||||||||||||||||||
Sbjct: 18  caccatgtcaacggcgttca 37
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>emb|AL354706.11| Human DNA sequence from clone RP11-229I7 on chromosome 13, complete
             sequence
          Length = 96045

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    ttcacttattttgcataaaa 56
             ||||||||||||||||||||
Sbjct: 29584 ttcacttattttgcataaaa 29603
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 527     cgttctgcacatgcagcgcc 546
               ||||||||||||||||||||
Sbjct: 1715683 cgttctgcacatgcagcgcc 1715702
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>emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 103124

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 478   gccacgtccacgtaccccagaggt 501
             ||||| ||||||||||||||||||
Sbjct: 96140 gccacctccacgtaccccagaggt 96117
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>ref|NM_001030074.1| Danio rerio im:7152114 (im:7152114), mRNA
          Length = 1629

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 672 caccatgtcaacggcgttca 691
           ||||||||||||||||||||
Sbjct: 18  caccatgtcaacggcgttca 37
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>emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on chromosome 11 Contains a
             protease (prosome, macropain) 26S subunit ATPase 1 (Psmc1)
             pseudogene and a CpG island, complete sequence
          Length = 197265

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 354   ccctccggcactgccctgctccccggcc 381
             ||||||| | ||||||||||||||||||
Sbjct: 31650 ccctccgcccctgccctgctccccggcc 31623
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>gb|AF403051.1|AF403051 Pseudorabies virus strain Fa glycoprotein C gene, complete cds
          Length = 1562

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 caccgggtgctcgtccgcga 298
           ||||||||||||||||||||
Sbjct: 916 caccgggtgctcgtccgcga 897
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   caccgggtgctcgtccgcga 298
             ||||||||||||||||||||
Sbjct: 54862 caccgggtgctcgtccgcga 54843
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>gb|AC133106.3| Homo sapiens BAC clone RP11-634B17 from 2, complete sequence
          Length = 109568

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    taaaatgggaaatatactag 71
             ||||||||||||||||||||
Sbjct: 81268 taaaatgggaaatatactag 81249
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 280     accgggtgctcgtccgcgag 299
               ||||||||||||||||||||
Sbjct: 4606525 accgggtgctcgtccgcgag 4606506
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>emb|CR933839.10| Zebrafish DNA sequence from clone DKEY-244A7 in linkage group 18,
            complete sequence
          Length = 88900

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 672  caccatgtcaacggcgttca 691
            ||||||||||||||||||||
Sbjct: 5810 caccatgtcaacggcgttca 5791
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>gb|AF158090.1|AF158090 Pseudorabies virus glycoprotein C (gC) gene, complete cds
          Length = 1755

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  caccgggtgctcgtccgcga 298
            ||||||||||||||||||||
Sbjct: 1059 caccgggtgctcgtccgcga 1040
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>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence
          Length = 149807

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     gaaacattcacttattttgc 50
              ||||||||||||||||||||
Sbjct: 101727 gaaacattcacttattttgc 101708
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 164     agtgaatggccgatgcgagt 183
               ||||||||||||||||||||
Sbjct: 6301611 agtgaatggccgatgcgagt 6301630
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>gb|M12778.1|SH1GGIII Pseudorabies virus (PRV) glycoprotein gIII mRNA, complete cds
          Length = 1722

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  caccgggtgctcgtccgcga 298
            ||||||||||||||||||||
Sbjct: 1029 caccgggtgctcgtccgcga 1010
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>dbj|D49437.1|SH1GGIII3 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1584

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 caccgggtgctcgtccgcga 298
           ||||||||||||||||||||
Sbjct: 919 caccgggtgctcgtccgcga 900
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>dbj|D49436.1|SH1GGIII2 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1579

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 caccgggtgctcgtccgcga 298
           ||||||||||||||||||||
Sbjct: 916 caccgggtgctcgtccgcga 897
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>dbj|D49435.1|SH1GGIII1 Pseudorabies virus DNA for glycoprotein gIII, complete cds
          Length = 1584

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 caccgggtgctcgtccgcga 298
           ||||||||||||||||||||
Sbjct: 919 caccgggtgctcgtccgcga 900


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,963,130
Number of Sequences: 3902068
Number of extensions: 3963130
Number of successful extensions: 85550
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85100
Number of HSP's gapped (non-prelim): 439
length of query: 691
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 668
effective length of database: 17,143,297,704
effective search space: 11451722866272
effective search space used: 11451722866272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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