ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13n21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463331.1| Oryza sativa (japonica cultivar-group), predic... 196 6e-47
2dbj|AK121299.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 6e-47
3gb|AY106126.1| Zea mays PCO099877 mRNA sequence 172 9e-40
4gb|DQ308536.1| Triticum monococcum cultivar DV92 genomic sequence 153 8e-34
5gb|DQ308539.1| Triticum monococcum cultivar DV92 genomic sequence 111 3e-21
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 103 7e-19
7dbj|AP003308.3| Oryza sativa (japonica cultivar-group) genomic D... 103 7e-19
8ref|XM_532263.2| PREDICTED: Canis familiaris similar to solute c... 46 0.13
9gb|AC157984.17| Medicago truncatula clone mth2-142a1, complete s... 46 0.13
10emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome 46 0.13
11ref|XM_482450.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.53
12gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.53
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
15dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
16dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
17gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 44 0.53
18gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.53
19ref|XM_468088.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.1
20ref|XM_464540.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.1
21emb|Z77853.1|HSN53F3 Human DNA sequence from clone LL22NC03-53F3... 42 2.1
22emb|AL162351.1|ATT20L15 Arabidopsis thaliana DNA chromosome 5, B... 42 2.1
23gb|AE011917.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 2.1
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
26dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
27dbj|AP005767.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
28dbj|AP005780.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
29dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
30dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
31dbj|AK120020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
32ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.3
33ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 8.3
34gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 8.3
35gb|AF247162.1| Oryza sativa alpha-expansin OsEXPA5 mRNA, complet... 40 8.3
36gb|AF394546.1| Oryza sativa alpha-expansin OsEXPA5 (EXPA5) gene,... 40 8.3
37gb|AC122850.4| Mus musculus BAC clone RP23-167J19 from 10, compl... 40 8.3
38gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete se... 40 8.3
39gb|AC152411.5| Mus musculus BAC clone RP24-87M19 from chromosome... 40 8.3
40emb|BX295538.1|NC45B12 Neurospora crassa DNA linkage group VI Co... 40 8.3
41emb|BX571886.9| Zebrafish DNA sequence from clone DKEY-257C10 in... 40 8.3
42gb|AC104235.3| Homo sapiens chromosome 11, clone RP11-12N12, com... 40 8.3
43gb|AC025919.8| Homo sapiens chromosome 15 clone RP11-947O24 map ... 40 8.3
44dbj|AK158531.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 40 8.3
45gb|AC018927.6|AC018927 Homo sapiens chromosome 15 clone RP11-353... 40 8.3
46gb|AY029314.1| Zea mays seven transmembrane protein Mlo3 mRNA, c... 40 8.3
47dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
48dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
49dbj|AK120576.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
50dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
51dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
52gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge... 40 8.3
53gb|CP000225.1| Drosophila melanogaster genomic scaffold 21100002... 40 8.3
54emb|CT010444.10| Mouse DNA sequence from clone RP23-151L20 on ch... 40 8.3 
>ref|XM_463331.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 441

 Score =  196 bits (99), Expect = 6e-47
 Identities = 198/231 (85%)
 Strand = Plus / Minus

                                                                       
Query: 290 tgaaattttgtgccttcctttagcgattctccgagcaatcactttacgcccaccagtggt 349
           ||||||| ||||||| || || || || || || |||||||| |||||||||||  ||||
Sbjct: 435 tgaaattctgtgcctgcccttggcaatcctgcgcgcaatcaccttacgcccacctttggt 376

                                                                       
Query: 350 tgatttgcgtgcacgaaatccatgggttcgtttccgcttgatggtgctgggttggtaagt 409
           |||||| |||| | |||| |||||||||| ||||||||||||||| ||||| || |||||
Sbjct: 375 tgattttcgtgtaagaaacccatgggttcttttccgcttgatggtactgggctgataagt 316

                                                                       
Query: 410 ccttttgggaagtaactcaaggggttcattagcaacaggatcaattccatcgtcaatgag 469
            ||||| ||||||| ||| |||||||||||||||||||||||  |||| || || |||| 
Sbjct: 315 tctttttggaagtagctccaggggttcattagcaacaggatcctttccgtcttcgatgat 256

                                                              
Query: 470 gaacctgagagaggggaggccgcaggggaaggagatctccccagggagcga 520
           ||||| ||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 255 gaaccggagcgaggggaggccgcaggggaaggagatctctcctgggagcga 205
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>dbj|AK121299.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110L12, full
           insert sequence
          Length = 638

 Score =  196 bits (99), Expect = 6e-47
 Identities = 198/231 (85%)
 Strand = Plus / Minus

                                                                       
Query: 290 tgaaattttgtgccttcctttagcgattctccgagcaatcactttacgcccaccagtggt 349
           ||||||| ||||||| || || || || || || |||||||| |||||||||||  ||||
Sbjct: 448 tgaaattctgtgcctgcccttggcaatcctgcgcgcaatcaccttacgcccacctttggt 389

                                                                       
Query: 350 tgatttgcgtgcacgaaatccatgggttcgtttccgcttgatggtgctgggttggtaagt 409
           |||||| |||| | |||| |||||||||| ||||||||||||||| ||||| || |||||
Sbjct: 388 tgattttcgtgtaagaaacccatgggttcttttccgcttgatggtactgggctgataagt 329

                                                                       
Query: 410 ccttttgggaagtaactcaaggggttcattagcaacaggatcaattccatcgtcaatgag 469
            ||||| ||||||| ||| |||||||||||||||||||||||  |||| || || |||| 
Sbjct: 328 tctttttggaagtagctccaggggttcattagcaacaggatcctttccgtcttcgatgat 269

                                                              
Query: 470 gaacctgagagaggggaggccgcaggggaaggagatctccccagggagcga 520
           ||||| ||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 268 gaaccggagcgaggggaggccgcaggggaaggagatctctcctgggagcga 218
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>gb|AY106126.1| Zea mays PCO099877 mRNA sequence
          Length = 856

 Score =  172 bits (87), Expect = 9e-40
 Identities = 195/231 (84%)
 Strand = Plus / Minus

                                                                       
Query: 290 tgaaattttgtgccttcctttagcgattctccgagcaatcactttacgcccaccagtggt 349
           ||||||| ||||||| ||||| ||||||||||| |||||||| || ||||||||  ||||
Sbjct: 507 tgaaattctgtgcctgccttttgcgattctccgggcaatcaccttgcgcccacccttggt 448

                                                                       
Query: 350 tgatttgcgtgcacgaaatccatgggttcgtttccgcttgatggtgctgggttggtaagt 409
            ||||| |||| | | ||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 447 cgatttacgtgtaaggaatccatgggttcttttccgcttgatggtactgggctggtaagt 388

                                                                       
Query: 410 ccttttgggaagtaactcaaggggttcattagcaacaggatcaattccatcgtcaatgag 469
            ||||| ||||| ||||  || || |||||||||||||||||     | ||||| |||| 
Sbjct: 387 tcttttcggaagcaactggagagggtcattagcaacaggatcctcaacgtcgtcgatgaa 328

                                                              
Query: 470 gaacctgagagaggggaggccgcaggggaaggagatctccccagggagcga 520
           ||| | ||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 327 gaagcggagcgaggggaggccgcaggggaaggagatctcgccggggagcga 277
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>gb|DQ308536.1| Triticum monococcum cultivar DV92 genomic sequence
          Length = 329

 Score =  153 bits (77), Expect = 8e-34
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                       
Query: 357 cgtgcacgaaatccatgggttcgtttccgcttgatggtgctgggttggtaagtccttttg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cgtgcacgaaatccatgggttcgtttccgcttgatggtgctgggttggtaagtccttttg 312

                            
Query: 417 ggaagtaactcaagggg 433
           |||||||||||||||||
Sbjct: 313 ggaagtaactcaagggg 329



 Score =  139 bits (70), Expect = 1e-29
 Identities = 73/74 (98%)
 Strand = Plus / Plus

                                                                       
Query: 284 ttaccatgaaattttgtgccttcctttagcgattctccgagcaatcactttacgcccacc 343
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1   ttaccatgaaattttgtgccttcctttagcgattctccgagcaatcaccttacgcccacc 60

                         
Query: 344 agtggttgatttgc 357
           ||||||||||||||
Sbjct: 61  agtggttgatttgc 74
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>gb|DQ308539.1| Triticum monococcum cultivar DV92 genomic sequence
          Length = 397

 Score =  111 bits (56), Expect = 3e-21
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                       
Query: 516 agcgaagttaggtttgcgaccacttccgcgtcgtgagcgtccaccgacgccggcggcggc 575
           |||||||||||  | |||||||| ||||| ||||| |||| ||||||| ||| |||||||
Sbjct: 26  agcgaagttagtctcgcgaccacctccgcatcgtgtgcgtacaccgactccgccggcggc 85

                                               
Query: 576 gggacgtgcgcctggatcctatggagtagcgacgga 611
           |||||||||| |||||||||||||||||||||||||
Sbjct: 86  gggacgtgcggctggatcctatggagtagcgacgga 121
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                            
Query: 364      gaaatccatgggttcgtttccgcttgatggtgctgggttggtaagtccttttgggaagta 423
                |||| |||||||||| ||||||||||||||| ||||| || ||||| ||||| |||||||
Sbjct: 21931494 gaaacccatgggttcttttccgcttgatggtactgggctgataagttctttttggaagta 21931435

                                            
Query: 424      actcaaggggttcattagcaacaggatc 451
                 ||| |||||||||||||||||||||||
Sbjct: 21931434 gctccaggggttcattagcaacaggatc 21931407



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                        
Query: 465      atgaggaacctgagagaggggaggccgcaggggaaggagatctccccagggagcga 520
                |||| ||||| ||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 21929705 atgatgaaccggagcgaggggaggccgcaggggaaggagatctctcctgggagcga 21929650



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                            
Query: 290      tgaaattttgtgccttcctttagcgattctccgagcaatcactttacgcccaccagtggt 349
                ||||||| ||||||| || || || || || || |||||||| |||||||||||  ||||
Sbjct: 21931821 tgaaattctgtgcctgcccttggcaatcctgcgcgcaatcaccttacgcccacctttggt 21931762

                      
Query: 350      tgattt 355
                ||||||
Sbjct: 21931761 tgattt 21931756
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>dbj|AP003308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1129G05
          Length = 132535

 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                         
Query: 364   gaaatccatgggttcgtttccgcttgatggtgctgggttggtaagtccttttgggaagta 423
             |||| |||||||||| ||||||||||||||| ||||| || ||||| ||||| |||||||
Sbjct: 13302 gaaacccatgggttcttttccgcttgatggtactgggctgataagttctttttggaagta 13243

                                         
Query: 424   actcaaggggttcattagcaacaggatc 451
              ||| |||||||||||||||||||||||
Sbjct: 13242 gctccaggggttcattagcaacaggatc 13215



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                     
Query: 465   atgaggaacctgagagaggggaggccgcaggggaaggagatctccccagggagcga 520
             |||| ||||| ||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 11513 atgatgaaccggagcgaggggaggccgcaggggaaggagatctctcctgggagcga 11458



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                         
Query: 290   tgaaattttgtgccttcctttagcgattctccgagcaatcactttacgcccaccagtggt 349
             ||||||| ||||||| || || || || || || |||||||| |||||||||||  ||||
Sbjct: 13629 tgaaattctgtgcctgcccttggcaatcctgcgcgcaatcaccttacgcccacctttggt 13570

                   
Query: 350   tgattt 355
             ||||||
Sbjct: 13569 tgattt 13564
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>ref|XM_532263.2| PREDICTED: Canis familiaris similar to solute carrier family 22,
            member 16 (LOC475027), mRNA
          Length = 1746

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 426  tcaaggggttcattagcaacaggatca 452
            ||||||||||||||| |||||||||||
Sbjct: 1034 tcaaggggttcattaccaacaggatca 1008
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>gb|AC157984.17| Medicago truncatula clone mth2-142a1, complete sequence
          Length = 122915

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 221   acattcacattagcatcattcaa 243
             |||||||||||||||||||||||
Sbjct: 72805 acattcacattagcatcattcaa 72783
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>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                  
Query: 323     agcaatcactttacgcccaccagtggttgatttgcgtgcacgaaatccatg 373
               |||||| |||||||| |||||||  ||||   |||||||||||||||||||
Sbjct: 1155359 agcaatgactttacgtccaccagctgttgccatgcgtgcacgaaatccatg 1155309
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>ref|XM_482450.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 681

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 556 ccaccgacgccggcggcggcgg 577
           ||||||||||||||||||||||
Sbjct: 124 ccaccgacgccggcggcggcgg 145
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>gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_D04,
              complete sequence
          Length = 168424

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 90     catcactttgtcatgtttattt 111
              ||||||||||||||||||||||
Sbjct: 164433 catcactttgtcatgtttattt 164454
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 556      ccaccgacgccggcggcggcgg 577
                ||||||||||||||||||||||
Sbjct: 20155632 ccaccgacgccggcggcggcgg 20155653
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 90       catcactttgtcatgtttattt 111
                ||||||||||||||||||||||
Sbjct: 15509412 catcactttgtcatgtttattt 15509433
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>dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0077M12
          Length = 145337

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 556   ccaccgacgccggcggcggcgg 577
             ||||||||||||||||||||||
Sbjct: 21418 ccaccgacgccggcggcggcgg 21439
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>dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1188_F05
          Length = 117045

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 556    ccaccgacgccggcggcggcgg 577
              ||||||||||||||||||||||
Sbjct: 102178 ccaccgacgccggcggcggcgg 102199
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>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 78      atcatcgacgaccatcactttg 99
               ||||||||||||||||||||||
Sbjct: 1710120 atcatcgacgaccatcactttg 1710099
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>gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0049D13, complete sequence
          Length = 136942

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 90    catcactttgtcatgtttattt 111
             ||||||||||||||||||||||
Sbjct: 33918 catcactttgtcatgtttattt 33939
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>ref|XM_468088.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 774

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 556 ccaccgacgccggcggcggcg 576
           |||||||||||||||||||||
Sbjct: 121 ccaccgacgccggcggcggcg 101
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>ref|XM_464540.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1437

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 559 ccgacgccggcggcggcggga 579
           |||||||||||||||||||||
Sbjct: 182 ccgacgccggcggcggcggga 202
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>emb|Z77853.1|HSN53F3 Human DNA sequence from clone LL22NC03-53F3 on chromosome 22,
           complete sequence
          Length = 4233

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 cctcggaaagagaatacatgc 205
           |||||||||||||||||||||
Sbjct: 614 cctcggaaagagaatacatgc 634
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>emb|AL162351.1|ATT20L15 Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA project)
          Length = 96565

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 189   ggaaagagaatacatgcattg 209
             |||||||||||||||||||||
Sbjct: 92526 ggaaagagaatacatgcattg 92546
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>gb|AE011917.1| Xanthomonas axonopodis pv. citri str. 306,  section 295 of 469 of the
             complete genome
          Length = 11013

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 557   caccgacgccggcggcggcgg 577
             |||||||||||||||||||||
Sbjct: 10046 caccgacgccggcggcggcgg 10066
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 107     tattttaatggaacaaacgtt 127
               |||||||||||||||||||||
Sbjct: 9054709 tattttaatggaacaaacgtt 9054689



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 558      accgacgccggcggcggcgg 577
                ||||||||||||||||||||
Sbjct: 18827795 accgacgccggcggcggcgg 18827776
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 556      ccaccgacgccggcggcggcg 576
                |||||||||||||||||||||
Sbjct: 32984486 ccaccgacgccggcggcggcg 32984466



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 559     ccgacgccggcggcggcggga 579
               |||||||||||||||||||||
Sbjct: 5776130 ccgacgccggcggcggcggga 5776150



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 560      cgacgccggcggcggcggga 579
                ||||||||||||||||||||
Sbjct: 31239595 cgacgccggcggcggcggga 31239614
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>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_A01
          Length = 139121

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 556   ccaccgacgccggcggcggcg 576
             |||||||||||||||||||||
Sbjct: 30426 ccaccgacgccggcggcggcg 30406
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>dbj|AP005767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0035G04
          Length = 155636

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   tattttaatggaacaaacgtt 127
             |||||||||||||||||||||
Sbjct: 25494 tattttaatggaacaaacgtt 25474
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>dbj|AP005780.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0051H02
          Length = 136520

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   tattttaatggaacaaacgtt 127
             |||||||||||||||||||||
Sbjct: 98305 tattttaatggaacaaacgtt 98285
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>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0544H11
          Length = 178376

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 559  ccgacgccggcggcggcggga 579
            |||||||||||||||||||||
Sbjct: 5932 ccgacgccggcggcggcggga 5952
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>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1135_F06
          Length = 102230

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 559   ccgacgccggcggcggcggga 579
             |||||||||||||||||||||
Sbjct: 65644 ccgacgccggcggcggcggga 65664
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>dbj|AK120020.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C02, full
            insert sequence
          Length = 1581

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 559  ccgacgccggcggcggcggga 579
            |||||||||||||||||||||
Sbjct: 1175 ccgacgccggcggcggcggga 1155
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>ref|XM_467754.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1289

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 560 cgacgccggcggcggcggga 579
           ||||||||||||||||||||
Sbjct: 437 cgacgccggcggcggcggga 456
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>ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E02.30
           mRNA
          Length = 1417

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 560 cgacgccggcggcggcggga 579
           ||||||||||||||||||||
Sbjct: 443 cgacgccggcggcggcggga 462
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 532     cgaccacttccgcgtcgtga 551
               ||||||||||||||||||||
Sbjct: 4300024 cgaccacttccgcgtcgtga 4300043
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>gb|AF247162.1| Oryza sativa alpha-expansin OsEXPA5 mRNA, complete cds
          Length = 1412

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 560 cgacgccggcggcggcggga 579
           ||||||||||||||||||||
Sbjct: 414 cgacgccggcggcggcggga 433
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>gb|AF394546.1| Oryza sativa alpha-expansin OsEXPA5 (EXPA5) gene, complete cds
          Length = 6774

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 560  cgacgccggcggcggcggga 579
            ||||||||||||||||||||
Sbjct: 4709 cgacgccggcggcggcggga 4728
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>gb|AC122850.4| Mus musculus BAC clone RP23-167J19 from 10, complete sequence
          Length = 234973

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 302   ccttcctttagcgattctccgagc 325
             |||||||||| |||||||||||||
Sbjct: 47514 ccttcctttaacgattctccgagc 47537
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>gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete sequence
          Length = 138465

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     catcactttgtcatgtttat 109
              ||||||||||||||||||||
Sbjct: 119295 catcactttgtcatgtttat 119314
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>gb|AC152411.5| Mus musculus BAC clone RP24-87M19 from chromosome 10, complete sequence
          Length = 204973

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 302    ccttcctttagcgattctccgagc 325
              |||||||||| |||||||||||||
Sbjct: 180190 ccttcctttaacgattctccgagc 180213
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>emb|BX295538.1|NC45B12 Neurospora crassa DNA linkage group VI Cosmid clone 45B12
          Length = 37178

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 560  cgacgccggcggcggcggga 579
            ||||||||||||||||||||
Sbjct: 9202 cgacgccggcggcggcggga 9183
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>emb|BX571886.9| Zebrafish DNA sequence from clone DKEY-257C10 in linkage group 15,
             complete sequence
          Length = 178049

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   tttgctctaaccctgcctcg 184
             ||||||||||||||||||||
Sbjct: 38869 tttgctctaaccctgcctcg 38888
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>gb|AC104235.3| Homo sapiens chromosome 11, clone RP11-12N12, complete sequence
          Length = 162139

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    ggtttccattaccatgaaat 295
              ||||||||||||||||||||
Sbjct: 125018 ggtttccattaccatgaaat 124999
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>gb|AC025919.8| Homo sapiens chromosome 15 clone RP11-947O24 map 15q21.1, complete
              sequence
          Length = 188439

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     tttgtcatgtttattttaat 115
              ||||||||||||||||||||
Sbjct: 187073 tttgtcatgtttattttaat 187092
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>dbj|AK158531.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched
           library, clone:K230008A22 product:hypothetical IQ
           calmodulin-binding region/Bipartite nuclear localization
           signal/Spectrin repeat/IQ motif profile/Glutamic
           acid-rich region profile containing protein, full insert
           sequence
          Length = 1837

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 302 ccttcctttagcgattctccgagc 325
           |||||||||| |||||||||||||
Sbjct: 158 ccttcctttaacgattctccgagc 181
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>gb|AC018927.6|AC018927 Homo sapiens chromosome 15 clone RP11-353B9 map 15q21, complete
            sequence
          Length = 184864

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   tttgtcatgtttattttaat 115
            ||||||||||||||||||||
Sbjct: 3616 tttgtcatgtttattttaat 3635
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>gb|AY029314.1| Zea mays seven transmembrane protein Mlo3 mRNA, complete cds
          Length = 1869

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 562  acgccggcggcggcgggacg 581
            ||||||||||||||||||||
Sbjct: 1470 acgccggcggcggcgggacg 1489
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>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1734_E02
          Length = 168566

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 560    cgacgccggcggcggcggga 579
              ||||||||||||||||||||
Sbjct: 119438 cgacgccggcggcggcggga 119457
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>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1118_G04
          Length = 134464

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 560  cgacgccggcggcggcggga 579
            ||||||||||||||||||||
Sbjct: 9463 cgacgccggcggcggcggga 9482
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>dbj|AK120576.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135C24, full
           insert sequence
          Length = 2233

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 558 accgacgccggcggcggcgg 577
           ||||||||||||||||||||
Sbjct: 127 accgacgccggcggcggcgg 146
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>dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F08, full
           insert sequence
          Length = 1290

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 560 cgacgccggcggcggcggga 579
           ||||||||||||||||||||
Sbjct: 437 cgacgccggcggcggcggga 456
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>dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044E11, full
           insert sequence
          Length = 1416

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 560 cgacgccggcggcggcggga 579
           ||||||||||||||||||||
Sbjct: 442 cgacgccggcggcggcggga 461
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>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 102     atgtttattttaatggaaca 121
               ||||||||||||||||||||
Sbjct: 1238018 atgtttattttaatggaaca 1237999
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>gb|CP000225.1| Drosophila melanogaster genomic scaffold 211000022280724
          Length = 820587

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gctgggttggtaagtccttt 414
             ||||||||||||||||||||
Sbjct: 86504 gctgggttggtaagtccttt 86523
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>emb|CT010444.10| Mouse DNA sequence from clone RP23-151L20 on chromosome 12, complete
              sequence
          Length = 198654

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 280    tccattaccatgaaattttgtgccttcc 307
              ||||||||  ||||||||||||||||||
Sbjct: 106213 tccattacagtgaaattttgtgccttcc 106240


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,750,112
Number of Sequences: 3902068
Number of extensions: 5750112
Number of successful extensions: 113871
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112977
Number of HSP's gapped (non-prelim): 894
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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