Clone Information

BLAST Search Result

Clone Name	rbags14c21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p...	37	0.026
2	CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP)...	36	0.075
3	CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (...	36	0.075
4	CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP)...	36	0.075
5	CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP)...	36	0.075
6	CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP)...	36	0.075
7	GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)	35	0.098
8	RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-assoc...	35	0.17
9	RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-assoc...	35	0.17
10	GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: ...	34	0.29
11	GRP2_NICSY (P27484) Glycine-rich protein 2	33	0.37
12	ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5	33	0.49
13	GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: ...	33	0.49
14	GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: ...	33	0.49
15	GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; ...	33	0.64
16	GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; ...	33	0.64
17	GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; ...	33	0.64
18	GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; C...	33	0.64
19	GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; ...	32	0.83
20	RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro...	32	0.83
21	RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p...	32	0.83
22	RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro...	32	0.83
23	RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro...	32	0.83
24	RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p...	32	0.83
25	RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro...	32	0.83
26	RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro...	32	0.83
27	GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; ...	32	0.83
28	POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...	32	1.1
29	GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; ...	32	1.1
30	GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: ...	32	1.1
31	GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	32	1.4
32	POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	32	1.4
33	POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	32	1.4
34	GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	32	1.4
35	GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	32	1.4
36	POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	32	1.4
37	GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; ...	32	1.4
38	LARK_DROME (Q94901) RNA-binding protein lark	31	1.9
39	GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15...	31	1.9
40	GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15...	31	1.9
41	GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15...	31	1.9
42	GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; ...	31	2.4
43	GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; ...	31	2.4
44	GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; ...	31	2.4
45	GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; ...	31	2.4
46	GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein...	31	2.4
47	GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein...	31	2.4
48	GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein...	31	2.4
49	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	31	2.4
50	GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; ...	31	2.4
51	GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix prote...	30	3.2
52	GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix prote...	30	3.2
53	GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (...	30	3.2
54	POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	4.1
55	POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	4.1
56	POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	4.1
57	GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; ...	30	4.1
58	POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	4.1
59	GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	30	4.1
60	GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	30	4.1
61	GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; C...	30	4.1
62	GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	30	4.1
63	GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	30	4.1
64	GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	30	4.1
65	GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	30	4.1
66	BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog	30	4.1
67	POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	4.1
68	POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	4.1
69	GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	30	4.1
70	GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15; ...	30	5.4
71	GIS2_YEAST (P53849) Zinc-finger protein GIS2	30	5.4
72	GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (M...	30	5.4
73	GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (...	30	5.4
74	GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; C...	29	7.1
75	GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; ...	29	7.1
76	GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	7.1
77	GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	7.1
78	ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6	29	7.1
79	ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6	29	7.1
80	GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	7.1
81	POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	7.1
82	POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	7.1
83	POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	7.1
84	POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	9.2
85	GAG_HV1Z2 (P12495) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	9.2
86	GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	9.2
87	GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	9.2
88	ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9	29	9.2
89	POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	9.2
90	POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	9.2
91	POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	9.2
92	GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-...	29	9.2
93	GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	9.2
94	GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	9.2
95	ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11	29	9.2
96	POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	9.2
97	GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-...	29	9.2
98	GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosp...	29	9.2
99	GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	9.2
100	GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	9.2
101	GAG_HV1EL (P04592) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	9.2
102	POL_HV1Z2 (P12499) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	9.2
103	POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	9.2
104	POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	9.2
105	POL_HV1EL (P04589) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	9.2
106	GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	9.2
107	GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	9.2
108	ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9	29	9.2
109	POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	9.2

>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)|
          Length = 271

 Score = 37.4 bits (85), Expect = 0.026
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCGKPGH +RECP
Sbjct: 224 CYKCGKPGHISRECP 238



 Score = 32.7 bits (73), Expect = 0.64
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCG+ GH +RECP
Sbjct: 198 CYKCGESGHMSRECP 212



 Score = 32.7 bits (73), Expect = 0.64
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CF+CG+ GH +RECP
Sbjct: 45  CFRCGEEGHMSRECP 59



 Score = 32.3 bits (72), Expect = 0.83
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C  CGK GH+ARECP
Sbjct: 18  CRNCGKEGHYARECP 32



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCG+ GH +R+CP
Sbjct: 255 CYKCGEAGHISRDCP 269



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCG+ GH +R+CP
Sbjct: 99  CYKCGQEGHLSRDCP 113



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CF+CG+ GH +R+CP
Sbjct: 72  CFRCGEAGHMSRDCP 86



 Score = 30.8 bits (68), Expect = 2.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCG  GH +R+CP
Sbjct: 170 CYKCGDAGHISRDCP 184



 Score = 30.8 bits (68), Expect = 2.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCG  GH +R+CP
Sbjct: 142 CYKCGDAGHISRDCP 156

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>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 172

 Score = 35.8 bits (81), Expect = 0.075
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CFKCG+ GH+ARECP
Sbjct: 6   CFKCGRTGHWARECP 20



 Score = 32.7 bits (73), Expect = 0.64
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR+C
Sbjct: 93  CYNCGKPGHLARDC 106



 Score = 30.0 bits (66), Expect = 4.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C++CG+ GH AREC
Sbjct: 153 CYRCGESGHLAREC 166

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>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 35.8 bits (81), Expect = 0.075
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CFKCG+ GH+ARECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 32.7 bits (73), Expect = 0.64
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR+C
Sbjct: 98  CYNCGKPGHLARDC 111



 Score = 30.0 bits (66), Expect = 4.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C++CG+ GH AREC
Sbjct: 158 CYRCGESGHLAREC 171

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>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 35.8 bits (81), Expect = 0.075
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CFKCG+ GH+ARECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 32.7 bits (73), Expect = 0.64
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR+C
Sbjct: 98  CYNCGKPGHLARDC 111



 Score = 30.0 bits (66), Expect = 4.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C++CG+ GH AREC
Sbjct: 158 CYRCGESGHLAREC 171

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>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 35.8 bits (81), Expect = 0.075
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CFKCG+ GH+ARECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 32.7 bits (73), Expect = 0.64
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR+C
Sbjct: 98  CYNCGKPGHLARDC 111



 Score = 30.0 bits (66), Expect = 4.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C++CG+ GH AREC
Sbjct: 158 CYRCGESGHLAREC 171

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>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 178

 Score = 35.8 bits (81), Expect = 0.075
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CFKCG+ GH+ARECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 32.7 bits (73), Expect = 0.64
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR+C
Sbjct: 99  CYNCGKPGHLARDC 112



 Score = 30.0 bits (66), Expect = 4.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C++CG+ GH AREC
Sbjct: 159 CYRCGESGHLAREC 172

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>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)|
          Length = 201

 Score = 35.4 bits (80), Expect = 0.098
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CFKCG+PGH AREC
Sbjct: 138 CFKCGEPGHMAREC 151



 Score = 30.4 bits (67), Expect = 3.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CG+ GHFAR+C
Sbjct: 182 CYSCGESGHFARDC 195

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>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R)
          Length = 1790

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CF+CGKPGH+ + CP
Sbjct: 162 CFRCGKPGHYIKNCP 176

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>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R) (Retinoblastoma-binding Q
           protein 1) (Protein RBQ-1)
          Length = 1792

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CF+CGKPGH+ + CP
Sbjct: 161 CFRCGKPGHYIKNCP 175

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>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 653

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CFKCGK GHFA++C
Sbjct: 545 CFKCGKKGHFAKDC 558

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>GRP2_NICSY (P27484) Glycine-rich protein 2|
          Length = 214

 Score = 33.5 bits (75), Expect = 0.37
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+KCG+ GHFAREC
Sbjct: 196 CYKCGEDGHFAREC 209



 Score = 33.5 bits (75), Expect = 0.37
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CFKCG+ GHFAR+C
Sbjct: 159 CFKCGESGHFARDC 172

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>ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5|
          Length = 475

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C  CG PGHFAR+CP
Sbjct: 445 CLYCGYPGHFARDCP 459

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>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp24; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 656

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CFKCGK GHFA+ C
Sbjct: 548 CFKCGKKGHFAKNC 561

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>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC|
           3.4.23.-)]
          Length = 827

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGKPGHF ++C
Sbjct: 460 CFNCGKPGHFKKDC 473

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>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR+C
Sbjct: 387 CYNCGKPGHLARQC 400

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>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR+C
Sbjct: 387 CYNCGKPGHLARQC 400

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>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR+C
Sbjct: 387 CYNCGKPGHLARQC 400

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>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR+C
Sbjct: 387 CYNCGKPGHLARQC 400

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>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 521

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C KCGKPGH A++C
Sbjct: 425 CLKCGKPGHLAKDC 438



 Score = 29.3 bits (64), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+ CGK GH  R+CP
Sbjct: 404 CYNCGKFGHMQRQCP 418

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>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C++CGK GH+++ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C++CGK GH+++ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C++CGK GH+++ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C++CGK GH+++ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C++CGK GH+++ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C++CGK GH+++ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C++CGK GH+++ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 520

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C KCGKPGH A++C
Sbjct: 421 CLKCGKPGHLAKDC 434



 Score = 29.3 bits (64), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+ CGK GH  R+CP
Sbjct: 400 CYNCGKFGHMQRQCP 414

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>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT|
           1-94 [Includes: Protease (EC 3.4.23.-); Reverse
           transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+ C +PGHF R+CP
Sbjct: 232 CYNCNQPGHFKRDCP 246

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>GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 446

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR+C
Sbjct: 386 CYYCGKPGHLARQC 399

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>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 657

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CFKCG+ GHFA+ C
Sbjct: 549 CFKCGRKGHFAKNC 562

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>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCGKPGH    CP
Sbjct: 411 CWKCGKPGHIMTNCP 425

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>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCGKPGH    CP
Sbjct: 411 CWKCGKPGHIMTNCP 425

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>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1549

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCGKPGH    CP
Sbjct: 411 CWKCGKPGHIMANCP 425

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>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCGKPGH    CP
Sbjct: 411 CWKCGKPGHIMTNCP 425

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>GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCGKPGH    CP
Sbjct: 411 CWKCGKPGHIMANCP 425

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>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCGKPGH    CP
Sbjct: 411 CWKCGKPGHIMTNCP 425

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>GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 441

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR+C
Sbjct: 381 CYNCGKPGHQARQC 394

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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C++CG+ GH+++ECP
Sbjct: 170 CYRCGRSGHWSKECP 184

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>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CFKC +PGHF+++C
Sbjct: 402 CFKCKQPGHFSKQC 415



 Score = 29.3 bits (64), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH + +C
Sbjct: 383 CYNCGKPGHLSSQC 396

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>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CFKC +PGHF+++C
Sbjct: 402 CFKCKQPGHFSKQC 415



 Score = 29.3 bits (64), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH + +C
Sbjct: 383 CYNCGKPGHLSSQC 396

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>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CFKC +PGHF+++C
Sbjct: 402 CFKCKQPGHFSKQC 415



 Score = 29.3 bits (64), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH + +C
Sbjct: 383 CYNCGKPGHLSSQC 396

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>GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 510

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCGKPGH   +CP
Sbjct: 414 CWKCGKPGHQMAKCP 428

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>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 513

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CFKCGK GH A++C
Sbjct: 413 CFKCGKIGHMAKDC 426



 Score = 28.9 bits (63), Expect = 9.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH  REC
Sbjct: 392 CFNCGKFGHMQREC 405

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>GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; Major core|
           protein p24; Nucleic acid-binding protein p10]
          Length = 450

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF C KPGH AR+C
Sbjct: 377 CFNCKKPGHLARQC 390



 Score = 29.6 bits (65), Expect = 5.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C KCGKPGH A +C
Sbjct: 396 CNKCGKPGHLAAKC 409

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>GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; Major core|
           protein p24; Nucleic acid-binding protein p10]
          Length = 450

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF C KPGH AR+C
Sbjct: 377 CFNCKKPGHLARQC 390



 Score = 29.6 bits (65), Expect = 5.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C KCGKPGH A +C
Sbjct: 396 CNKCGKPGHLAAKC 409

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>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 428

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF+CGK GH++R+C
Sbjct: 356 CFRCGKAGHWSRDC 369

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>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF+CGK GH++R+C
Sbjct: 357 CFRCGKAGHWSRDC 370

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>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF+CGK GH++R+C
Sbjct: 357 CFRCGKAGHWSRDC 370

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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C++CG+ GH+++ECP
Sbjct: 162 CYRCGQEGHWSKECP 176

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>GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; Major core|
           protein p24; Nucleic acid-binding protein p10]
          Length = 449

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF C KPGH AR+C
Sbjct: 377 CFNCKKPGHLARQC 390

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>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein p17;|
           Capsid protein p26; Nucleocapsid protein p14]
          Length = 476

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR C
Sbjct: 423 CYHCGKPGHQARNC 436

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>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein p17;|
           Capsid protein p26; Nucleocapsid protein p14]
          Length = 476

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+ CGKPGH AR C
Sbjct: 423 CYHCGKPGHQARNC 436

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>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core|
           protein p24; Core protein p12 (p15)]
          Length = 432

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF+CGK GH++R+C
Sbjct: 362 CFRCGKVGHWSRDC 375

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>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1438

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHIARNC 404

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>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR)] (Fragment)
          Length = 531

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHLARNC 404

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>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1439

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 397 CFNCGKEGHLARNC 410

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>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein|
           p25; Core protein p16]
          Length = 508

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 402 CFNCGKEGHLARNC 415

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>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR)] (Fragment)
          Length = 549

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHIARNC 404

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>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHIARNC 404

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>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHIARNC 404

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>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein|
           p2A; Core protein p2B; Core protein p10; Capsid protein
           p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)]
          Length = 701

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+ CG PGH+  +CP
Sbjct: 509 CYTCGSPGHYQAQCP 523

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>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 504

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 397 CFNCGKEGHLARNC 410

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>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHIARNC 404

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>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHLARNC 404

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>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHIARNC 404

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>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog|
          Length = 179

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C+KCG+ GH AR+C
Sbjct: 85  CYKCGRVGHIARDC 98

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>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHIARNC 404

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>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHIARNC 404

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>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 503

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHIARNC 404

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>GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15; Major core|
           protein p24; Nucleic acid-binding protein p10]
          Length = 450

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           C KCGKPGH A +C
Sbjct: 396 CNKCGKPGHLAAKC 409



 Score = 29.6 bits (65), Expect = 5.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF C +PGH AR+C
Sbjct: 377 CFNCKRPGHLARQC 390

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>GIS2_YEAST (P53849) Zinc-finger protein GIS2|
          Length = 153

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CF C + GH +RECP
Sbjct: 67  CFNCNQTGHISRECP 81

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>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C++C K GH+AR+CP
Sbjct: 346 CYRCLKEGHWARDCP 360

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>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C++C K GH+AR+CP
Sbjct: 346 CYRCLKEGHWARDCP 360

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>GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; Core protein|
           p18; Core protein p12; Core protein p27; Core protein
           p14; Core protein p4]
          Length = 612

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CF CG+PGH A  CP
Sbjct: 509 CFVCGQPGHRAAVCP 523

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>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 519

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+ CGK GH  R+CP
Sbjct: 399 CYNCGKFGHMQRQCP 413

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>GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHTARNC 404

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>GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHTARNC 404

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>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6|
          Length = 1491

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400  CFKCGKPGHFARECP 356
            CF CG+ GH  +ECP
Sbjct: 1449 CFICGREGHIKKECP 1463

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>ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6|
          Length = 1495

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400  CFKCGKPGHFARECP 356
            CF CG+ GH  +ECP
Sbjct: 1453 CFICGREGHIKKECP 1467

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>GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHTARNC 404

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>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHTARNC 404

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>POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHTARNC 404

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>POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH AR C
Sbjct: 391 CFNCGKEGHTARNC 404

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>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1440

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 394 CFNCGKEGHIAKNC 407

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>GAG_HV1Z2 (P12495) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 500

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 393 CFNCGKEGHIAKNC 406

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>GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 492

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 385 CFNCGKEGHLAKNC 398

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>GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 506

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 394 CFNCGKEGHIAKNC 407

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>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9|
          Length = 271

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CF CG+ GH +R CP
Sbjct: 186 CFVCGEMGHLSRSCP 200

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>POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1427

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 385 CFNCGKEGHLAKNC 398

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>POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1436

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 393 CFNCGKEGHIAKNC 406

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>POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1433

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 390 CFNCGKEGHIAKNC 403

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>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline|
           helicase 2)
          Length = 974

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CF CG+ GH + ECP
Sbjct: 475 CFNCGEQGHRSNECP 489

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>GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 498

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 390 CFNCGKEGHIAKNC 403

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>GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 501

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 393 CFNCGKEGHIAKNC 406

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>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11|
          Length = 1644

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 400  CFKCGKPGHFARECP 356
            CF CG  GH  RECP
Sbjct: 1359 CFICGDAGHVRRECP 1373

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>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCGK GH   +CP
Sbjct: 411 CWKCGKAGHIMAKCP 425

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>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline|
           helicase 1)
          Length = 763

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CF CG+ GH + ECP
Sbjct: 264 CFNCGEQGHRSNECP 278

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>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH  R+C
Sbjct: 526 CFSCGKTGHIKRDC 539

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>GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 391 CFNCGKEGHIAKNC 404

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>GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 391 CFNCGKEGHIAKNC 404

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>GAG_HV1EL (P04592) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 392 CFNCGKEGHIAKNC 405

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>POL_HV1Z2 (P12499) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1435

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 393 CFNCGKEGHIAKNC 406

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>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 391 CFNCGKEGHIAKNC 404

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>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 391 CFNCGKEGHIAKNC 404

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>POL_HV1EL (P04589) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 400 CFKCGKPGHFAREC 359
           CF CGK GH A+ C
Sbjct: 392 CFNCGKEGHIAKNC 405

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>GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCGK GH   +CP
Sbjct: 411 CWKCGKAGHIMAKCP 425

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>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCGK GH   +CP
Sbjct: 410 CWKCGKTGHIMSKCP 424

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>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9|
          Length = 273

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           CF CG+ GH +R CP
Sbjct: 186 CFVCGEMGHLSRSCP 200

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>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1464

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 400 CFKCGKPGHFARECP 356
           C+KCGK GH   +CP
Sbjct: 410 CWKCGKTGHIMSKCP 424


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,424,248
Number of Sequences: 219361
Number of extensions: 317980
Number of successful extensions: 1115
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result