ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13n19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 94 4e-16
2gb|DQ153245.1| Oryza sativa (japonica cultivar-group) EIN3-like ... 94 4e-16
3gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare str... 94 4e-16
4dbj|AB074971.2| Oryza sativa (japonica cultivar-group) OsEIL1 mR... 94 4e-16
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
6gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare str... 94 4e-16
7dbj|AK103227.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
8dbj|AK101076.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
9dbj|AK098987.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
10dbj|AK098905.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
11dbj|AK072465.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
12dbj|AK060826.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
13gb|BT017092.1| Zea mays clone EL01N0361C03.c mRNA sequence 56 1e-04
14gb|AY107845.1| Zea mays PCO092605 mRNA sequence 56 1e-04
15gb|AY104931.1| Zea mays PCO092603 mRNA sequence 48 0.023
16gb|CP000264.1| Jannaschia sp. CCS1, complete genome 44 0.36
17emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chro... 42 1.4
18gb|AC171335.1| Mus musculus BAC clone RP23-2K15 from chromosome ... 42 1.4
19emb|CT009696.9| Mouse DNA sequence from clone RP23-11B13 on chro... 40 5.7 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                            
Query: 132      gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
                ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 11751081 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 11751022

                                           
Query: 192      gagatgccgcccatctggtttccgaat 218
                  |||| ||||||||||||| ||||||
Sbjct: 11751021 ttgatgtcgcccatctggttaccgaat 11750995



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                            
Query: 132      gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
                ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 11746256 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 11746197

                                           
Query: 192      gagatgccgcccatctggtttccgaat 218
                  |||| ||||||||||||| ||||||
Sbjct: 11746196 ttgatgtcgcccatctggttaccgaat 11746170
to top
>gb|DQ153245.1| Oryza sativa (japonica cultivar-group) EIN3-like protein 1 (EIL1)
            mRNA, complete cds
          Length = 1923

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 132  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 1871 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 1812

                                       
Query: 192  gagatgccgcccatctggtttccgaat 218
              |||| ||||||||||||| ||||||
Sbjct: 1811 ttgatgtcgcccatctggttaccgaat 1785
to top
>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0093J20, from chromosome 3, complete sequence
          Length = 148635

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                          
Query: 132    gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
              ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 140176 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 140117

                                         
Query: 192    gagatgccgcccatctggtttccgaat 218
                |||| ||||||||||||| ||||||
Sbjct: 140116 ttgatgtcgcccatctggttaccgaat 140090



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                          
Query: 132    gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
              ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 135351 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 135292

                                         
Query: 192    gagatgccgcccatctggtttccgaat 218
                |||| ||||||||||||| ||||||
Sbjct: 135291 ttgatgtcgcccatctggttaccgaat 135265
to top
>dbj|AB074971.2| Oryza sativa (japonica cultivar-group) OsEIL1 mRNA for
            ethylene-insensitive-3-like protein, complete cds
          Length = 2330

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 132  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2021 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 1962

                                       
Query: 192  gagatgccgcccatctggtttccgaat 218
              |||| ||||||||||||| ||||||
Sbjct: 1961 ttgatgtcgcccatctggttaccgaat 1935
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                            
Query: 132      gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
                ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 11747844 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 11747785

                                           
Query: 192      gagatgccgcccatctggtttccgaat 218
                  |||| ||||||||||||| ||||||
Sbjct: 11747784 ttgatgtcgcccatctggttaccgaat 11747758



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                            
Query: 132      gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
                ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 11743019 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 11742960

                                           
Query: 192      gagatgccgcccatctggtttccgaat 218
                  |||| ||||||||||||| ||||||
Sbjct: 11742959 ttgatgtcgcccatctggttaccgaat 11742933
to top
>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0035J18, from chromsome 3, complete sequence
          Length = 162711

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                          
Query: 132    gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
              ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 159572 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 159631

                                         
Query: 192    gagatgccgcccatctggtttccgaat 218
                |||| ||||||||||||| ||||||
Sbjct: 159632 ttgatgtcgcccatctggttaccgaat 159658
to top
>dbj|AK103227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123C05, full
            insert sequence
          Length = 2521

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 132  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2205 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 2146

                                       
Query: 192  gagatgccgcccatctggtttccgaat 218
              |||| ||||||||||||| ||||||
Sbjct: 2145 ttgatgtcgcccatctggttaccgaat 2119
to top
>dbj|AK101076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024C06, full
            insert sequence
          Length = 2572

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 132  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2211 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 2152

                                       
Query: 192  gagatgccgcccatctggtttccgaat 218
              |||| ||||||||||||| ||||||
Sbjct: 2151 ttgatgtcgcccatctggttaccgaat 2125
to top
>dbj|AK098987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095D20, full
            insert sequence
          Length = 2428

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 132  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2057 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 1998

                                       
Query: 192  gagatgccgcccatctggtttccgaat 218
              |||| ||||||||||||| ||||||
Sbjct: 1997 ttgatgtcgcccatctggttaccgaat 1971
to top
>dbj|AK098905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D08, full
            insert sequence
          Length = 2401

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 132  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2085 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 2026

                                       
Query: 192  gagatgccgcccatctggtttccgaat 218
              |||| ||||||||||||| ||||||
Sbjct: 2025 ttgatgtcgcccatctggttaccgaat 1999
to top
>dbj|AK072465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023116C13, full
            insert sequence
          Length = 2743

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 132  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 1745 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 1686

                                       
Query: 192  gagatgccgcccatctggtttccgaat 218
              |||| ||||||||||||| ||||||
Sbjct: 1685 ttgatgtcgcccatctggttaccgaat 1659
to top
>dbj|AK060826.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-B06, full
            insert sequence
          Length = 2491

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 132  gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccgatgcgccg 191
            ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 2085 gggtattcgacggcacctgacatgttgaaaccagagccgaacctgaactccgatgcgcca 2026

                                       
Query: 192  gagatgccgcccatctggtttccgaat 218
              |||| ||||||||||||| ||||||
Sbjct: 2025 ttgatgtcgcccatctggttaccgaat 1999
to top
>gb|BT017092.1| Zea mays clone EL01N0361C03.c mRNA sequence
          Length = 1010

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 150 gacatgttgaagccagagccgaacctgaaatccgatgcgccggagatgccgcccatctgg 209
           ||||||||||| ||||||||||||||||| ||||  | || || |||| |||||||||||
Sbjct: 615 gacatgttgaaaccagagccgaacctgaactccgccgtgctggtgatgtcgcccatctgg 556



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 91  ttattcttcagtagtaccagttggggccgtcgttcttctgcg 132
           |||||||||||||| |||| ||||  ||||||||||||||||
Sbjct: 692 ttattcttcagtagaaccaattggtcccgtcgttcttctgcg 651
to top
>gb|AY107845.1| Zea mays PCO092605 mRNA sequence
          Length = 1614

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                        
Query: 150  gacatgttgaagccagagccgaacctgaaatccgatgcgccggagatgccgcccatctgg 209
            ||||||||||| ||||||||||||||||| ||||  | || || |||| |||||||||||
Sbjct: 1202 gacatgttgaaaccagagccgaacctgaactccgccgtgctggtgatgtcgcccatctgg 1143



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 91   ttattcttcagtagtaccagttggggccgtcgttcttctgcg 132
            |||||||||||||| |||| ||||  ||||||||||||||||
Sbjct: 1276 ttattcttcagtagaaccaattggccccgtcgttcttctgcg 1235
to top
>gb|AY104931.1| Zea mays PCO092603 mRNA sequence
          Length = 881

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 132 gggtagtcgacggcgccggacatgttgaagccagagccgaacctgaaatccg 183
           |||||||||||| |||  ||||||||||| ||||  ||||||||||| ||||
Sbjct: 567 gggtagtcgacgccgctagacatgttgaaaccaggaccgaacctgaactccg 516



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 91  ttattcttcagtagtaccagttggggccgtcgttcttctg 130
           |||||||||||||| |||| ||||  ||||||||| ||||
Sbjct: 617 ttattcttcagtagaaccaattggtcccgtcgttcctctg 578
to top
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 181     ccgatgcgccggagatgccgcc 202
               ||||||||||||||||||||||
Sbjct: 1666921 ccgatgcgccggagatgccgcc 1666942
to top
>emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chromosome 12, complete
             sequence
          Length = 214861

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    agttgacattttaaaagctta 71
             |||||||||||||||||||||
Sbjct: 52263 agttgacattttaaaagctta 52283
to top
>gb|AC171335.1| Mus musculus BAC clone RP23-2K15 from chromosome 12, complete sequence
          Length = 180226

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    agttgacattttaaaagctta 71
             |||||||||||||||||||||
Sbjct: 82685 agttgacattttaaaagctta 82665
to top
>emb|CT009696.9| Mouse DNA sequence from clone RP23-11B13 on chromosome 9, complete
              sequence
          Length = 196093

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     cccatggaaacacaaggttg 36
              ||||||||||||||||||||
Sbjct: 161040 cccatggaaacacaaggttg 161059


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,142,974
Number of Sequences: 3902068
Number of extensions: 2142974
Number of successful extensions: 40603
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40527
Number of HSP's gapped (non-prelim): 76
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top