ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags14c15 |
|---|---|
| Clone Library Name | barley_pub |
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 130 bits (327), Expect = 2e-30 Identities = 68/121 (56%), Positives = 82/121 (67%), Gaps = 1/121 (0%) Frame = -3 Query: 516 AAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPS-FVDSQYKVYVGNLAKKVTTEV 340 A IE LNDTE+GGRKIKVN+TE L +D + ++E S FV+S YKVY+GNLAK VT E+ Sbjct: 140 AVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNEL 199 Query: 339 LKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNR 160 LK+FFSEKG+VL A V R PGT KS G+G NN+ LEGQ IRVN+ Sbjct: 200 LKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259 Query: 159 A 157 A Sbjct: 260 A 260 Score = 38.5 bits (88), Expect = 0.011 Identities = 25/104 (24%), Positives = 46/104 (44%) Frame = -3 Query: 474 KIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSAT 295 K++ VTE +S+ S S + ++YVGN+ + + + L+ E G + A Sbjct: 59 KVRAVVTEE----TSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAE 114 Query: 294 VSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVN 163 V + +S+ +G N+TE+ G+ I+VN Sbjct: 115 VMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVN 158
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 61.2 bits (147), Expect = 2e-09 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPN------IDASAPESEPSFVDSQYKVYVGNLAKKV 352 AI + ++VGGR +KVN E +P + A + FVDS +K+YV NL+ + Sbjct: 171 AIRLFDGSQVGGRTVKVNFPE--VPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWAL 228 Query: 351 TTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTI 172 T++ L++ F+++ +SA V + +S+G+G N ELEG+ + Sbjct: 229 TSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL 288 Query: 171 RVNRA 157 R+N A Sbjct: 289 RLNVA 293 Score = 36.6 bits (83), Expect = 0.043 Identities = 19/74 (25%), Positives = 36/74 (48%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 ++YVGNL +T+ L F+E G V + + T +S+G+ Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 204 FNNTELEGQTIRVN 163 F+ +++ G+T++VN Sbjct: 175 FDGSQVGGRTVKVN 188
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 59.7 bits (143), Expect = 5e-09 Identities = 37/119 (31%), Positives = 54/119 (45%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 A+E N +V GR + VN PE P + Y++YVGN+ + L+ Sbjct: 193 AVEMYNRYDVNGRLLTVNKAAR-----RGERPERPPRTFEQSYRIYVGNIPWGIDDARLE 247 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 FSE G+V+SA V T +S+G+G + L+G+TIRVN A Sbjct: 248 QLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306 Score = 39.3 bits (90), Expect = 0.007 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 2/94 (2%) Frame = -3 Query: 432 DASAPESEPSFVD--SQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 + A E E F + K++VGNL V +E L F + G V A V T +S+G Sbjct: 119 EVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRG 178 Query: 258 YGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 +G +N ++ G+ + VN+A Sbjct: 179 FGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKA 212
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 59.3 bits (142), Expect = 6e-09 Identities = 45/165 (27%), Positives = 75/165 (45%) Frame = -3 Query: 519 AAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEV 340 AAA+ ++N ++ G+++KVN A+ P S+ + + V+VG+L+ ++TTE Sbjct: 79 AAALAAMNGRKILGKEVKVNW---------ATTPSSQKKDTSNHFHVFVGDLSPEITTED 129 Query: 339 LKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNR 160 +K+ F+ G++ A V + T KSKGYG L G+ IR N Sbjct: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189 Query: 159 A*T*QKFRTGGKGRISRRTPVDEGEFETRFYNKVLKAFDVISLGS 25 A +R+ P + ET K L+ DV++ S Sbjct: 190 A--------------TRKPPAPKSTQETN--TKQLRFEDVVNQSS 218
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 58.5 bits (140), Expect = 1e-08 Identities = 36/121 (29%), Positives = 60/121 (49%) Frame = -3 Query: 519 AAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEV 340 AAA+ ++N ++ G+++KVN A+ P S+ + + V+VG+L+ ++TTE Sbjct: 62 AAALAAMNGRKILGKEVKVNW---------ATTPSSQKKDTSNHFHVFVGDLSPEITTED 112 Query: 339 LKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNR 160 +K+ F+ G++ A V + T KSKGYG L G+ IR N Sbjct: 113 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 172 Query: 159 A 157 A Sbjct: 173 A 173
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 57.8 bits (138), Expect = 2e-08 Identities = 38/119 (31%), Positives = 53/119 (44%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 A+E N ++ GR + VN S PE P + ++VYVGNL V L+ Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAP-----RGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLE 261 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 FSE G+V+ A V T +S+G+G + LEG+ IRVN A Sbjct: 262 QLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/85 (31%), Positives = 40/85 (47%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXX 232 EPS + K++VGNLA V ++ L F + G V A V T +S+G+G Sbjct: 145 EPS---EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201 Query: 231 XXXXXXXXXFNNTELEGQTIRVNRA 157 FN +L G+ + VN+A Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKA 226
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 55.8 bits (133), Expect = 7e-08 Identities = 39/119 (32%), Positives = 56/119 (47%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 A+E LN ++ GR++ VN A + EPS +VYVGNL V T L+ Sbjct: 112 AVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSC-----RVYVGNLPWDVDTSRLE 166 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 FSE G+V+SA V T +S+G+G + L+G+ +RVN A Sbjct: 167 QLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225 Score = 38.1 bits (87), Expect = 0.015 Identities = 25/86 (29%), Positives = 38/86 (44%) Frame = -3 Query: 414 SEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXX 235 SEP + K++VGNL V +E L F G V A V T +S+G+G Sbjct: 49 SEPP---EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMST 105 Query: 234 XXXXXXXXXXFNNTELEGQTIRVNRA 157 N +++G+ + VN+A Sbjct: 106 VEEAEKAVELLNGYDMDGRQLTVNKA 131
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 55.8 bits (133), Expect = 7e-08 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Frame = -3 Query: 516 AAIESLNDTEVGGRKIKVNV--------TESFLPNIDASAPESEPSFVDSQYKVYVGNLA 361 AA + N E+ GR ++VN SF N DS +VYVGNLA Sbjct: 143 AACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLA 202 Query: 360 KKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEG 181 V + L+ FSE+G+V+ A V + +S+G+G + +L G Sbjct: 203 WGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNG 262 Query: 180 QTIRVNRA 157 + IRV+ A Sbjct: 263 RAIRVSPA 270 Score = 37.0 bits (84), Expect = 0.033 Identities = 25/85 (29%), Positives = 35/85 (41%) Frame = -3 Query: 417 ESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXX 238 E E +F K++VGNL + L F G V V T +S+G+G Sbjct: 78 EEERNF-SPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMS 136 Query: 237 XXXXXXXXXXXFNNTELEGQTIRVN 163 FN EL+G+ +RVN Sbjct: 137 SKEEVEAACQQFNGYELDGRALRVN 161
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 55.5 bits (132), Expect = 9e-08 Identities = 35/119 (29%), Positives = 54/119 (45%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 A+E + ++ GR + VN S PE P Y++YVGN+ + L+ Sbjct: 154 AVELYSQYDLNGRLLTVNKAAP-----RGSRPERAPRTFQPTYRIYVGNIPWDIDDARLE 208 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 FSE G+V+SA V + +S+G+G + L+G+TIRVN A Sbjct: 209 QVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267 Score = 38.5 bits (88), Expect = 0.011 Identities = 31/115 (26%), Positives = 48/115 (41%) Frame = -3 Query: 501 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 322 L+D E GG SF+ + EPS K++VGNL + +E L F Sbjct: 68 LDDQEQGGD------FPSFVGEAGETEEYQEPS---EDAKLFVGNLPYDIDSEGLAQLFQ 118 Query: 321 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 + G V A V T +S+G+G ++ +L G+ + VN+A Sbjct: 119 QAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKA 173
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 53.5 bits (127), Expect = 3e-07 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 21/141 (14%) Frame = -3 Query: 516 AAIESLNDTEVGGRKIKVNVTESFLPNIDAS-------------APESEPSF-------- 400 AA + N E+ GR I+VN + ++S + SF Sbjct: 143 AAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRS 202 Query: 399 VDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXX 220 VDS +VYVGNL+ V LK FSE+G V+ A V + +S+G+G Sbjct: 203 VDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVN 262 Query: 219 XXXXXFNNTELEGQTIRVNRA 157 N +L+G++IRV+ A Sbjct: 263 DAIDSLNGVDLDGRSIRVSAA 283 Score = 38.1 bits (87), Expect = 0.015 Identities = 25/83 (30%), Positives = 36/83 (43%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXX 232 +P F + K++VGNL V + L F G V V T +S+G+G Sbjct: 80 QPRFSED-LKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTK 138 Query: 231 XXXXXXXXXFNNTELEGQTIRVN 163 FN E++G+ IRVN Sbjct: 139 EEVEAAEQQFNGYEIDGRAIRVN 161
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 53.1 bits (126), Expect = 4e-07 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 2/167 (1%) Frame = -3 Query: 519 AAAIESLNDTEVGGRKIKVN--VTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTT 346 AAA+ ++N ++ G+++KVN T S +S+ + V+VG+L+ ++TT Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119 Query: 345 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRV 166 E +K F+ G + A V + T KSKGYG L G+ IR Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179 Query: 165 NRA*T*QKFRTGGKGRISRRTPVDEGEFETRFYNKVLKAFDVISLGS 25 N A +R+ P + +E+ K L +V+S S Sbjct: 180 NWA--------------TRKPPAPKSTYESN--TKQLSYDEVVSQSS 210
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 53.1 bits (126), Expect = 4e-07 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 2/123 (1%) Frame = -3 Query: 519 AAAIESLNDTEVGGRKIKVN--VTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTT 346 AAA+ ++N ++ G+++KVN T S +S+ + + V+VG+L+ ++TT Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQITT 119 Query: 345 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRV 166 E +K F+ G + A V + T KSKGYG L G+ IR Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179 Query: 165 NRA 157 N A Sbjct: 180 NWA 182
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 53.1 bits (126), Expect = 4e-07 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 21/141 (14%) Frame = -3 Query: 516 AAIESLNDTEVGGRKIKVNVTESFLPNIDAS-------------APESEPSF-------- 400 AA + N E+ GR I+VN + ++S + SF Sbjct: 144 AAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRS 203 Query: 399 VDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXX 220 VDS +VYVGNL+ V LK FSE+G V+ A V + +S+G+G Sbjct: 204 VDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVN 263 Query: 219 XXXXXFNNTELEGQTIRVNRA 157 N +L+G++IRV+ A Sbjct: 264 DAIDSLNGIDLDGRSIRVSAA 284 Score = 36.6 bits (83), Expect = 0.043 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKG--EVLSATVSRIPGTPKSKGYGXXXXX 238 +P F + K++VGNL V + L F G E++ ++ G +S+G+G Sbjct: 81 QPRFSED-LKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSG--RSRGFGFVTMS 137 Query: 237 XXXXXXXXXXXFNNTELEGQTIRVN 163 FN E++G+ IRVN Sbjct: 138 TKEEVEAAEQQFNGYEIDGRAIRVN 162
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 52.4 bits (124), Expect = 8e-07 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Frame = -3 Query: 516 AAIESLNDTEVGGRKIKVNVTESFLPNIDAS---APESEPSFVDSQYKVYVGNLAKKVTT 346 AA + N E+ GR ++VN ++S SF DS +VYVGNLA V Sbjct: 143 AACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSF-DSSNRVYVGNLAWGVDQ 201 Query: 345 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRV 166 + L+ FSE+G+V+ A V + +S+G+G + +L G+ IRV Sbjct: 202 DALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261 Query: 165 NRA 157 + A Sbjct: 262 SPA 264 Score = 38.5 bits (88), Expect = 0.011 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 5/104 (4%) Frame = -3 Query: 417 ESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXX 238 E E +F K++VGNL + L F G V V T +S+G+G Sbjct: 78 EEERNF-SPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMS 136 Query: 237 XXXXXXXXXXXFNNTELEGQTIRVNRA*T*QK-----FRTGGKG 121 FN EL+G+ +RVN +K FR G +G Sbjct: 137 SKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRG 180
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 50.4 bits (119), Expect = 3e-06 Identities = 30/92 (32%), Positives = 45/92 (48%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 D +Y+ +VG LA + E L+N F+ GE+L + V T +S+G+G Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64 Query: 216 XXXXFNNTELEGQTIRVNRA*T*QKFRTGGKG 121 N EL+G+ I VN+A + R GG G Sbjct: 65 AIENMNGKELDGRNITVNQA----QSRGGGGG 92
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 48.9 bits (115), Expect = 8e-06 Identities = 30/91 (32%), Positives = 41/91 (45%) Frame = -3 Query: 429 ASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGX 250 A P +P+ S V+VGN+ + T E LK+ FSE G V+S + T K KGYG Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61 Query: 249 XXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 N E G+ +RV+ A Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRVDNA 92
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 48.9 bits (115), Expect = 8e-06 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 14/134 (10%) Frame = -3 Query: 516 AAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSF--------------VDSQYKV 379 AA + N E+ GR ++VN D + SF S +V Sbjct: 147 AAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRV 206 Query: 378 YVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFN 199 YVGNL+ V L++ FSE+G+V+ A V + +SKG+G + Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266 Query: 198 NTELEGQTIRVNRA 157 +L+G+ IRV+ A Sbjct: 267 GADLDGRQIRVSEA 280 Score = 42.0 bits (97), Expect = 0.001 Identities = 28/87 (32%), Positives = 38/87 (43%) Frame = -3 Query: 423 APESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXX 244 AP E SF + K++VGNL V + L F G V V T +S+G+G Sbjct: 80 APPKEQSF-SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVT 138 Query: 243 XXXXXXXXXXXXXFNNTELEGQTIRVN 163 FN EL+G+ +RVN Sbjct: 139 MSSVSEVEAAAQQFNGYELDGRPLRVN 165
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/76 (32%), Positives = 40/76 (52%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 ++YVGNL+ V L+N F+E+G+V+ A V + +SKG+G Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 204 FNNTELEGQTIRVNRA 157 N +L+G+ IRV+ A Sbjct: 318 LNGADLDGRQIRVSEA 333 Score = 42.7 bits (99), Expect = 6e-04 Identities = 29/90 (32%), Positives = 38/90 (42%) Frame = -3 Query: 432 DASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 D SAP SF K++VGNL+ V + L F G V V T +S+G+G Sbjct: 85 DDSAPVERNSF-SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 143 Query: 252 XXXXXXXXXXXXXXXXFNNTELEGQTIRVN 163 FN E EG+ +RVN Sbjct: 144 FVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 47.0 bits (110), Expect = 3e-05 Identities = 28/85 (32%), Positives = 39/85 (45%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXX 232 +P+ S V+VGN+ + T E LK+ FSE G V+S + T K KGYG Sbjct: 8 DPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 231 XXXXXXXXXFNNTELEGQTIRVNRA 157 N E G+ +RV+ A Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNA 92
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 47.0 bits (110), Expect = 3e-05 Identities = 28/85 (32%), Positives = 39/85 (45%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXX 232 +P+ S V+VGN+ + T E LK+ FSE G V+S + T K KGYG Sbjct: 8 DPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 231 XXXXXXXXXFNNTELEGQTIRVNRA 157 N E G+ +RV+ A Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNA 92
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 46.6 bits (109), Expect = 4e-05 Identities = 28/92 (30%), Positives = 43/92 (46%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 D +Y+ +VG LA E L+ F+ G+V+ + V T +S+G+G Sbjct: 5 DVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLD 64 Query: 216 XXXXFNNTELEGQTIRVNRA*T*QKFRTGGKG 121 N EL+G+ I VN+A + R GG G Sbjct: 65 AIENMNGKELDGRNITVNQA----QSRGGGGG 92
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 46.2 bits (108), Expect = 5e-05 Identities = 28/85 (32%), Positives = 39/85 (45%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXX 232 +P+ S V+VGN+ + T E LK+ FSE G V+S + T K KGYG Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 231 XXXXXXXXXFNNTELEGQTIRVNRA 157 N E G+ +RV+ A Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNA 92
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 46.2 bits (108), Expect = 5e-05 Identities = 28/85 (32%), Positives = 39/85 (45%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXX 232 +P+ S V+VGN+ + T E LK+ FSE G V+S + T K KGYG Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 231 XXXXXXXXXFNNTELEGQTIRVNRA 157 N E G+ +RV+ A Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNA 92
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 46.2 bits (108), Expect = 5e-05 Identities = 28/85 (32%), Positives = 39/85 (45%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXX 232 +P+ S V+VGN+ + T E LK+ FSE G V+S + T K KGYG Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 231 XXXXXXXXXFNNTELEGQTIRVNRA 157 N E G+ +RV+ A Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNA 92
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 46.2 bits (108), Expect = 5e-05 Identities = 28/92 (30%), Positives = 43/92 (46%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 D +Y+ +VG LA L+ FS+ GEVL + + T +S+G+G Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64 Query: 216 XXXXFNNTELEGQTIRVNRA*T*QKFRTGGKG 121 N +L+G++I VN A Q +GG G Sbjct: 65 AIEGMNGQDLDGRSITVNEA---QSRGSGGGG 93
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 45.4 bits (106), Expect = 9e-05 Identities = 37/119 (31%), Positives = 51/119 (42%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AIE +N + RK+ V +S +A F + VY+ N ++V E LK Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKER-EAELGAKAKEFTN----VYIKNFGEEVDDESLK 208 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 FS+ G+ LS V R P KSKG+G N E+ G+ I V RA Sbjct: 209 ELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266 Score = 35.0 bits (79), Expect = 0.13 Identities = 26/89 (29%), Positives = 36/89 (40%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +YVG+L VT +L FS G VLS V R T +S GY Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 201 NNTELEGQTIRVNRA*T*QKFRTGGKGRI 115 N ++G+ IR+ + R G G + Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNV 101
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 45.1 bits (105), Expect = 1e-04 Identities = 35/119 (29%), Positives = 53/119 (44%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AIE LN + +++ V FL + + ++ F + VYV NLA+ T + LK Sbjct: 180 AIEKLNGMLLNDKQVYVG---PFLRRQERDSTANKTKFTN----VYVKNLAESTTDDDLK 232 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 N F E G++ SA V + G KSKG+G N + + + V RA Sbjct: 233 NAFGEYGKITSAVVMK-DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290 Score = 37.0 bits (84), Expect = 0.033 Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 3/107 (2%) Frame = -3 Query: 426 SAPESEPSFVDSQY---KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGY 256 SAP + +Q+ +YVG+L VT L + F + G V++ V R T +S GY Sbjct: 20 SAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGY 79 Query: 255 GXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA*T*QKFRTGGKGRI 115 G N L G+ IRV + R G G I Sbjct: 80 GYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNI 126
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/90 (31%), Positives = 42/90 (46%) Frame = -3 Query: 390 QYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXX 211 +Y+ +VG LA L+ FS+ GEV+ + + T +S+G+G Sbjct: 5 EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 64 Query: 210 XXFNNTELEGQTIRVNRA*T*QKFRTGGKG 121 N EL+G+TI VN A + R GG G Sbjct: 65 DEMNGKELDGRTITVNEA----QSRGGGGG 90
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 43.9 bits (102), Expect = 3e-04 Identities = 30/119 (25%), Positives = 50/119 (42%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 A+++LN ++ +K+N A +S+ S D + ++VG+L V E L+ Sbjct: 130 ALQTLNGKQIENNIVKINW-----------AFQSQQSSSDDTFNLFVGDLNVNVDDETLR 178 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 N F + LS V T S+GYG +L G+ +R+N A Sbjct: 179 NAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 237 Score = 34.3 bits (77), Expect = 0.21 Identities = 18/75 (24%), Positives = 32/75 (42%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +YVGNL K +T ++LK +F G + + + I K+ Y Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKI-MIDKNNKNVNYAFVEYHQSHDANIALQTL 134 Query: 201 NNTELEGQTIRVNRA 157 N ++E +++N A Sbjct: 135 NGKQIENNIVKINWA 149
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = -3 Query: 492 TEVGGRKIKVNVTESFLPNIDASAPESEPSFVD-SQYKVYVGNLAKKVTTEVLKNFFSEK 316 TE G KI + E + ++S +E + ++K+++G L+ T + LK++FS+ Sbjct: 59 TEAEGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 118 Query: 315 GEVLSATVSRIPGTPKSKGYG 253 G+V+ T+ P T +S+G+G Sbjct: 119 GDVVDCTLKLDPITGRSRGFG 139
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 43.1 bits (100), Expect = 5e-04 Identities = 26/90 (28%), Positives = 41/90 (45%) Frame = -3 Query: 390 QYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXX 211 +Y+ +VG LA E L+ FS+ G++ + + T +S+G+G Sbjct: 5 EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAI 64 Query: 210 XXFNNTELEGQTIRVNRA*T*QKFRTGGKG 121 N EL+G+ I VN A Q +GG G Sbjct: 65 EGMNGQELDGRNITVNEA---QSRGSGGGG 91
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 43.1 bits (100), Expect = 5e-04 Identities = 32/121 (26%), Positives = 52/121 (42%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 A+E +N +GGR IKV S +P E + S ++YV ++ ++ E +K Sbjct: 187 ALEQMNGALMGGRNIKVG-RPSNMPQAQQVIDEVQEE-AKSFNRIYVASIHPDLSEEDIK 244 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA* 154 + F G +L +++ KGYG N +L GQ +RV R+ Sbjct: 245 SVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSI 304 Query: 153 T 151 T Sbjct: 305 T 305
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 43.1 bits (100), Expect = 5e-04 Identities = 25/92 (27%), Positives = 43/92 (46%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 D +Y+ +VG LA L+ F++ G+V+ + + T +S+G+G Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64 Query: 216 XXXXFNNTELEGQTIRVNRA*T*QKFRTGGKG 121 N +L+G++I VN A Q +GG G Sbjct: 65 AIEGMNGQDLDGRSITVNEA---QSRGSGGGG 93
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 42.7 bits (99), Expect = 6e-04 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Frame = -3 Query: 489 EVGGRKIKVNVTESFLPNIDASAPESEPSFVD-SQYKVYVGNLAKKVTTEVLKNFFSEKG 313 E G KI + E + ++S SE + ++K+++G L+ T + LK++FS+ G Sbjct: 62 ESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFG 121 Query: 312 EVLSATVSRIPGTPKSKGYG 253 EV+ T+ P T +S+G+G Sbjct: 122 EVVDCTLKLDPITGRSRGFG 141
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 42.7 bits (99), Expect = 6e-04 Identities = 26/90 (28%), Positives = 42/90 (46%) Frame = -3 Query: 390 QYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXX 211 +Y+ +VG LA E L+ FS+ G+V+ + + + +S+G+G Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64 Query: 210 XXFNNTELEGQTIRVNRA*T*QKFRTGGKG 121 N EL+G+ I VN A Q +GG G Sbjct: 65 EEMNGKELDGRVITVNEA---QSRGSGGGG 91
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 42.4 bits (98), Expect = 8e-04 Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Frame = -3 Query: 489 EVGGRKIKVNVTESFLPNIDASAPESEPSFVD-SQYKVYVGNLAKKVTTEVLKNFFSEKG 313 E G KI + E + ++S +E + ++K+++G L+ T + LK++FS+ G Sbjct: 62 EAEGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFG 121 Query: 312 EVLSATVSRIPGTPKSKGYG 253 EV+ T+ P T +S+G+G Sbjct: 122 EVVDCTLKLDPITGRSRGFG 141
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 42.0 bits (97), Expect = 0.001 Identities = 26/93 (27%), Positives = 44/93 (47%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 D +Y+ +VG LA L+ FS+ GE++ + + T +S+G+G Sbjct: 5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64 Query: 216 XXXXFNNTELEGQTIRVNRA*T*QKFRTGGKGR 118 N +L+G++I VN A + + GG GR Sbjct: 65 AIEGMNGQDLDGRSITVNEAQS-RGSGAGGGGR 96
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/62 (33%), Positives = 33/62 (53%) Frame = -3 Query: 438 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 N+D EP V K+++G L + T E LK F + GE++ V + P T +S+G Sbjct: 3 NMDRENDHGEPEHVR---KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRG 59 Query: 258 YG 253 +G Sbjct: 60 FG 61
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 41.6 bits (96), Expect = 0.001 Identities = 16/44 (36%), Positives = 28/44 (63%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K++VG L T ++++ F+S+ GE+ V R P T +S+G+G Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFG 67
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 41.2 bits (95), Expect = 0.002 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 6/113 (5%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K++VG L + L++ FS G + V + T +S+G+G Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 204 FNNTELEGQTIRVNRA*T*QK------FRTGGKGRISRRTPVDEGEFETRFYN 64 N L+G+ IRV+ A + F G+GR R D+G R+Y+ Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYD 119
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 3/60 (5%) Frame = -3 Query: 423 APESEPSFVDSQY---KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 +P + S DSQ+ K+++G L+ + + + L+++FS+ GE+ V R P T +S+G+G Sbjct: 6 SPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65 Score = 32.7 bits (73), Expect = 0.62 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = -3 Query: 414 SEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 ++P V K++VG L+ E +K +F + G+V A + T + +G+G Sbjct: 101 AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFG 154
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 40.4 bits (93), Expect = 0.003 Identities = 27/94 (28%), Positives = 42/94 (44%) Frame = -3 Query: 438 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 N + S+P + DS+ + V L + +T E LK+ F GE+ S + R T +S G Sbjct: 22 NNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 258 YGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 YG N L+ +TI+V+ A Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/82 (23%), Positives = 30/82 (36%) Frame = -3 Query: 408 PSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXX 229 P + + ++V NLA +L F G V + V R T K KG+G Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328 Query: 228 XXXXXXXXFNNTELEGQTIRVN 163 N L + ++V+ Sbjct: 329 EAAMAIASLNGYRLGDRVLQVS 350 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/87 (27%), Positives = 40/87 (45%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AI +LN + + IKV+ A S S D+ +YV L K +T + L+ Sbjct: 96 AINTLNGLRLQTKTIKVSY-----------ARPSSASIRDAN--LYVSGLPKTMTQKELE 142 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYG 253 FS+ G ++++ + T S+G G Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVG 169
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 40.4 bits (93), Expect = 0.003 Identities = 27/94 (28%), Positives = 42/94 (44%) Frame = -3 Query: 438 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 N + S+P + DS+ + V L + +T E LK+ F GE+ S + R T +S G Sbjct: 22 NNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 258 YGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 YG N L+ +TI+V+ A Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/82 (23%), Positives = 30/82 (36%) Frame = -3 Query: 408 PSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXX 229 P + + ++V NLA +L F G V + V R T K KG+G Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328 Query: 228 XXXXXXXXFNNTELEGQTIRVN 163 N L + ++V+ Sbjct: 329 EAAMAIASLNGYRLGDRVLQVS 350 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/87 (27%), Positives = 40/87 (45%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AI +LN + + IKV+ A S S D+ +YV L K +T + L+ Sbjct: 96 AINTLNGLRLQTKTIKVSY-----------ARPSSASIRDAN--LYVSGLPKTMTQKELE 142 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYG 253 FS+ G ++++ + T S+G G Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVG 169
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 40.4 bits (93), Expect = 0.003 Identities = 27/94 (28%), Positives = 42/94 (44%) Frame = -3 Query: 438 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 N + S+P + DS+ + V L + +T E LK+ F GE+ S + R T +S G Sbjct: 22 NNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 258 YGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 YG N L+ +TI+V+ A Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/82 (23%), Positives = 30/82 (36%) Frame = -3 Query: 408 PSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXX 229 P + + ++V NLA +L F G V + V R T K KG+G Sbjct: 270 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 329 Query: 228 XXXXXXXXFNNTELEGQTIRVN 163 N L + ++V+ Sbjct: 330 EAAMAIASLNGYRLGDRVLQVS 351 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/87 (27%), Positives = 40/87 (45%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AI +LN + + IKV+ A S S D+ +YV L K +T + L+ Sbjct: 96 AINTLNGLRLQTKTIKVSY-----------ARPSSASIRDAN--LYVSGLPKTMTQKELE 142 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYG 253 FS+ G ++++ + T S+G G Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVG 169
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Frame = -3 Query: 435 IDASAPESEPSFVDSQY---KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKS 265 ++ AP+ + DS + K+++G L+ + T E L+ +F + GEV V R P T +S Sbjct: 1 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60 Query: 264 KGYG 253 +G+G Sbjct: 61 RGFG 64 Score = 34.3 bits (77), Expect = 0.21 Identities = 16/54 (29%), Positives = 30/54 (55%) Frame = -3 Query: 414 SEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 ++P V K++VG L+ T E +K++F + G+V A + T + +G+G Sbjct: 100 AQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFG 153
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Frame = -3 Query: 435 IDASAPESEPSFVDSQY---KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKS 265 ++ AP+ + DS + K+++G L+ + T E L+ +F + GEV V R P T +S Sbjct: 1 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60 Query: 264 KGYG 253 +G+G Sbjct: 61 RGFG 64 Score = 34.3 bits (77), Expect = 0.21 Identities = 16/54 (29%), Positives = 30/54 (55%) Frame = -3 Query: 414 SEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 ++P V K++VG L+ T E +K++F + G+V A + T + +G+G Sbjct: 100 AQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFG 153
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Frame = -3 Query: 435 IDASAPESEPSFVDSQY---KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKS 265 ++ AP+ + DS + K+++G L+ + T E L+ +F + GEV V R P T +S Sbjct: 1 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60 Query: 264 KGYG 253 +G+G Sbjct: 61 RGFG 64 Score = 33.9 bits (76), Expect = 0.28 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = -3 Query: 414 SEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 ++P V K++VG L+ T E +K +F + G+V A + T + +G+G Sbjct: 100 AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFG 153
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 40.0 bits (92), Expect = 0.004 Identities = 30/108 (27%), Positives = 50/108 (46%) Frame = -3 Query: 459 VTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIP 280 + + F +D + SE S D + V+VGNL KV ++ F + G +++ + R Sbjct: 267 IADGFRIRVDLA---SETSSRDKR-SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDK 322 Query: 279 GTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA*T*QKFR 136 T KG+G NN+EL G+ +RV R+ +KF+ Sbjct: 323 MTGIGKGFG-YVLFENTDSVHLALKLNNSELMGRKLRVMRSVNKEKFK 369 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = -3 Query: 510 IESLNDTEVGGRK-IKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 ++ DT V RK I++N E L N + V+VGNL + LK Sbjct: 158 LDDTEDTVVSQRKKIQINQEEERLKN---------------ERTVFVGNLPVTCNKKKLK 202 Query: 333 NFFSEKGEVLS 301 +FF E G++ S Sbjct: 203 SFFKEYGQIES 213
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 40.0 bits (92), Expect = 0.004 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 1/132 (0%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AI+ +N ++ G+ I+VN + N+D A +++GNL ++ ++L Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA------------NIFIGNLDPEIDEKLLY 117 Query: 333 NFFSEKGEVL-SATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 + FS G +L + + R P T SKGY N L + I V+ A Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177 Query: 156 *T*QKFRTGGKG 121 F+ KG Sbjct: 178 -----FKKDSKG 184 Score = 38.5 bits (88), Expect = 0.011 Identities = 23/75 (30%), Positives = 36/75 (48%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 VYVG L +KV+ +L F + G V++ + + T + +GYG Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 201 NNTELEGQTIRVNRA 157 N +L G+ IRVN+A Sbjct: 75 NMIKLYGKPIRVNKA 89
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/76 (25%), Positives = 38/76 (50%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K+++G L+ + T E L+NF+ + G++ V R P + +S+G+G Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 204 FNNTELEGQTIRVNRA 157 +T ++G+ + RA Sbjct: 70 RPHT-IDGRVVEPKRA 84
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 39.7 bits (91), Expect = 0.005 Identities = 29/108 (26%), Positives = 50/108 (46%) Frame = -3 Query: 459 VTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIP 280 + E F +D + SE + D + V+VGNL K+ L+ F + G +++ + R P Sbjct: 271 IAEGFRIRVDLA---SETASRDKR-SVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNP 326 Query: 279 GTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA*T*QKFR 136 T +G+G NN+EL G+ +RV R+ +K + Sbjct: 327 LTGVGRGFG-YVLFENTDAVHLALKLNNSELMGRKLRVMRSVNKEKLK 373
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 39.3 bits (90), Expect = 0.007 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Frame = -3 Query: 396 DSQY---KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 DSQ+ K+++G L+ + + + L+++FS+ GE+ V R P T +S+G+G Sbjct: 15 DSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65 Score = 32.7 bits (73), Expect = 0.62 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = -3 Query: 414 SEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 ++P V K++VG L+ E +K +F + G+V A + T + +G+G Sbjct: 101 AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFG 154
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 39.3 bits (90), Expect = 0.007 Identities = 22/75 (29%), Positives = 35/75 (46%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +YVG LA +VT +L N F G++ + + + +G+ Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 201 NNTELEGQTIRVNRA 157 N++EL G+TIRVN A Sbjct: 68 NDSELCGRTIRVNLA 82 Score = 30.4 bits (67), Expect = 3.1 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = -3 Query: 519 AAAIESLNDTEVGGRKIKVNVTESFLPNIDASAP 418 AAAI+++ND+E+ GR I+VN+ + D+ P Sbjct: 61 AAAIDNMNDSELCGRTIRVNLAKPVRVKEDSFKP 94
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 38.9 bits (89), Expect = 0.009 Identities = 29/108 (26%), Positives = 50/108 (46%) Frame = -3 Query: 459 VTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIP 280 + E F +D + SE + D + V+VGNL +V L+ F + G +++ + R P Sbjct: 265 IAEGFRIRVDLA---SETASRDKR-SVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNP 320 Query: 279 GTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA*T*QKFR 136 T +G+G NN+EL G+ +RV R+ +K + Sbjct: 321 LTGVGRGFG-YVLFENTDAVHLALKLNNSELMGRKLRVMRSVNKEKLK 367
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 38.9 bits (89), Expect = 0.009 Identities = 20/73 (27%), Positives = 35/73 (47%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 ++YVG+L +T ++L+ F G++ + + + T +SKGYG Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323 Query: 204 FNNTELEGQTIRV 166 N EL G+ +RV Sbjct: 324 LNGFELAGRPMRV 336
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 38.9 bits (89), Expect = 0.009 Identities = 16/44 (36%), Positives = 30/44 (68%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K++VG L+ + + LK++F++ GEV+ T+ P T +S+G+G Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 112
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 38.9 bits (89), Expect = 0.009 Identities = 16/44 (36%), Positives = 30/44 (68%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K++VG L+ + + LK++F++ GEV+ T+ P T +S+G+G Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 119 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/47 (27%), Positives = 25/47 (53%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGY 256 D K++VG L + T E ++ +F + GE+ + + P K +G+ Sbjct: 156 DPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGF 202
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 38.5 bits (88), Expect = 0.011 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 4/109 (3%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K++VG L + L++ FS G + V + T +S+G+G Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 204 FNNTELEGQTIRVNRA*T*QKFRT----GGKGRISRRTPVDEGEFETRF 70 N L+G+ IRV+ A + GG+GR R D+G R+ Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRGGAFGGRGRSYSRGGGDQGYGSGRY 115
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 38.5 bits (88), Expect = 0.011 Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEVL 337 AI+ +N + GRK+ V +S E+E ++ VY+ N + + E L Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKS------RKEREAELGARAKEFPNVYIKNFGEDMDDERL 207 Query: 336 KNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 K+ F + G LS V + KSKG+G N EL G+ I V RA Sbjct: 208 KDLFGKFGPALSVKVMT-DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 38.1 bits (87), Expect = 0.015 Identities = 14/44 (31%), Positives = 29/44 (65%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K+++G L+ + T E L+N++ + G++ V R P + +S+G+G Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFG 53
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 38.1 bits (87), Expect = 0.015 Identities = 23/75 (30%), Positives = 34/75 (45%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +YVG LA++V +VL F G++ + T K +G+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 201 NNTELEGQTIRVNRA 157 N +EL G+TIRVN A Sbjct: 68 NESELFGRTIRVNLA 82
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 38.1 bits (87), Expect = 0.015 Identities = 23/75 (30%), Positives = 34/75 (45%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +YVG LA++V +VL F G++ + T K +G+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 201 NNTELEGQTIRVNRA 157 N +EL G+TIRVN A Sbjct: 68 NESELFGRTIRVNLA 82
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 38.1 bits (87), Expect = 0.015 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K++VG L+ + L+ FS+ G++ V + T +S+G+G Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 204 FNNTELEGQTIRVNRA 157 N ++G+ IRV++A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 38.1 bits (87), Expect = 0.015 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K++VG L+ + L+ FS+ G++ V + T +S+G+G Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 204 FNNTELEGQTIRVNRA 157 N ++G+ IRV++A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 38.1 bits (87), Expect = 0.015 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K++VG L+ + L+ FS+ G++ V + T +S+G+G Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 204 FNNTELEGQTIRVNRA 157 N ++G+ IRV++A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 38.1 bits (87), Expect = 0.015 Identities = 14/44 (31%), Positives = 29/44 (65%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K+++G L+ + T E L+N++ + G++ V R P + +S+G+G Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFG 65
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 38.1 bits (87), Expect = 0.015 Identities = 18/51 (35%), Positives = 30/51 (58%) Frame = -3 Query: 405 SFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 S D K++VG L T E L+++FS+ GEV+ + + T +S+G+G Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFG 54
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 38.1 bits (87), Expect = 0.015 Identities = 21/76 (27%), Positives = 36/76 (47%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K+++G LA T E LK F+ + G+V+ V R T +S+G+G Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92 Query: 204 FNNTELEGQTIRVNRA 157 + ++G+T+ RA Sbjct: 93 RPHI-IDGKTVEAKRA 107
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 38.1 bits (87), Expect = 0.015 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 5/92 (5%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-----VYVGNLAKKVT 349 A+E+LND+E+ G K+ V + + + E ++ K ++V NL V Sbjct: 274 AVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVD 333 Query: 348 TEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 E L+ F+ G + SA V R KSKG+G Sbjct: 334 DEKLEEEFAPYGTITSAKVMRTE-NGKSKGFG 364
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 37.7 bits (86), Expect = 0.019 Identities = 21/87 (24%), Positives = 43/87 (49%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AI+ + E+ GR I +++ S + A + + + +++GNL+ + + Sbjct: 225 AIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIF 284 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYG 253 F++ GEV+S + P T + KG+G Sbjct: 285 ELFAKHGEVVSVRIPTHPETEQPKGFG 311 Score = 35.0 bits (79), Expect = 0.13 Identities = 20/70 (28%), Positives = 30/70 (42%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 ++VG L+ + E LK F G V+ A V GT +S+GYG Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 201 NNTELEGQTI 172 E++G+ I Sbjct: 230 QGKEIDGRPI 239
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 37.7 bits (86), Expect = 0.019 Identities = 16/44 (36%), Positives = 28/44 (63%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K++VG L T E L+++FS+ GEV+ + + T +S+G+G Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFG 54
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 37.7 bits (86), Expect = 0.019 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +++GNL VT E+L+ F SA V R T KS GYG F Sbjct: 113 LFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEF 172 Query: 201 NNTELEGQTIRVNRA*T*QKFRTG-GKGRISRRTPVDEGEFETR-FYNKVLKAFDVIS 34 N T GQ +++ + FR G P++ + TR FY +++ +V+S Sbjct: 173 NYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVLS 230
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 37.7 bits (86), Expect = 0.019 Identities = 18/76 (23%), Positives = 37/76 (48%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K+++G L+ + T E L+N++ + G + V R P + +S+G+G Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 204 FNNTELEGQTIRVNRA 157 +T ++G+ + RA Sbjct: 70 RPHT-IDGRVVEPKRA 84
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 37.7 bits (86), Expect = 0.019 Identities = 16/44 (36%), Positives = 28/44 (63%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K++VG L T E L+++FS+ GEV+ + + T +S+G+G Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFG 54
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 37.7 bits (86), Expect = 0.019 Identities = 26/94 (27%), Positives = 41/94 (43%) Frame = -3 Query: 438 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 N + S+P + DS+ + L + +T E LK+ F GE+ S + R T +S G Sbjct: 22 NNNCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 258 YGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 YG N L+ +TI+V+ A Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/82 (23%), Positives = 30/82 (36%) Frame = -3 Query: 408 PSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXX 229 P + + ++V NLA +L F G V + V R T K KG+G Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328 Query: 228 XXXXXXXXFNNTELEGQTIRVN 163 N L + ++V+ Sbjct: 329 EAAMAIASLNGYRLGDRVLQVS 350 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/87 (27%), Positives = 40/87 (45%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AI +LN + + IKV+ A S S D+ +YV L K +T + L+ Sbjct: 96 AINTLNGLRLQTKTIKVSY-----------ARPSSASIRDAN--LYVSGLPKTMTQKELE 142 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYG 253 FS+ G ++++ + T S+G G Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVG 169
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 37.4 bits (85), Expect = 0.025 Identities = 24/76 (31%), Positives = 30/76 (39%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K+Y+G L+ LK+ FS V A V T +S+GYG Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 204 FNNTELEGQTIRVNRA 157 N EL G I VN A Sbjct: 92 MNGQELNGFNISVNVA 107
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 37.4 bits (85), Expect = 0.025 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 2/121 (1%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 +I+ +N + G+K+ V F+P + E + + + VYV N + E LK Sbjct: 146 SIDKVNGMLLNGKKVYVG---KFIPRKEREKELGEKAKLFTN--VYVKNFTEDFDDEKLK 200 Query: 333 NFFSEKGEVLSATV-SRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTEL-EGQTIRVNR 160 FF G++ S V S+ G KSKG+G N ++ EG+++ V R Sbjct: 201 EFFEPYGKITSYKVMSKEDG--KSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVAR 258 Query: 159 A 157 A Sbjct: 259 A 259 Score = 29.6 bits (65), Expect = 5.3 Identities = 24/89 (26%), Positives = 34/89 (38%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +YVG+L + V L + FS G VLS V R T +S GY Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63 Query: 201 NNTELEGQTIRVNRA*T*QKFRTGGKGRI 115 N + + IR+ + R G G + Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVGNV 92
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 37.4 bits (85), Expect = 0.025 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNI-DASAPESEPSFVDSQYKVYVGNLAKKVTTEVL 337 A+E E+ GR I V+ T N + PE DS+ V V NL+ T + L Sbjct: 377 ALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEG-----DSKVLV-VNNLSYSATEDSL 430 Query: 336 KNFFSEKGEVLSATVSRIPGTP-KSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRV 166 + F + AT RIP ++KG+ NNTE+EG++IR+ Sbjct: 431 REVFEK------ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRL 482
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 37.4 bits (85), Expect = 0.025 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K++VG L+ + L+ FS+ G++ V + T +S+G+G Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 204 FNNTELEGQTIRVNRA 157 N ++G+ IRV++A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 37.4 bits (85), Expect = 0.025 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K++VG L+ + L+ FS+ G++ V + T +S+G+G Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 204 FNNTELEGQTIRVNRA 157 N ++G+ IRV++A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 37.4 bits (85), Expect = 0.025 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 12/92 (13%) Frame = -3 Query: 495 DTEVGGRKIKVNVTESF--LPNIDASAPESEPSFVDSQY----------KVYVGNLAKKV 352 DTE+ G +VT N DA A S D+Q K++VG L+ + Sbjct: 8 DTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWET 67 Query: 351 TTEVLKNFFSEKGEVLSATVSRIPGTPKSKGY 256 T + L++ F + GE+ S V P T +S+G+ Sbjct: 68 TEKELRDHFGKYGEIESINVKTDPQTGRSRGF 99
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 37.4 bits (85), Expect = 0.025 Identities = 35/131 (26%), Positives = 53/131 (40%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 A + LN ++ G+ I+VN AS + + + ++VGNL V VL Sbjct: 68 ACQILNQVKLFGKPIRVN---------RASQDRGVNTLIGAN--LFVGNLDPLVDERVLY 116 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA* 154 + FS G+++ A +SKGYG NN L + I V+ A Sbjct: 117 DTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYA- 175 Query: 153 T*QKFRTGGKG 121 F+ GKG Sbjct: 176 ----FKREGKG 182 Score = 36.2 bits (82), Expect = 0.056 Identities = 22/75 (29%), Positives = 33/75 (44%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +Y+GNL +KVT +L + G V++ + R G+G Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72 Query: 201 NNTELEGQTIRVNRA 157 N +L G+ IRVNRA Sbjct: 73 NQVKLFGKPIRVNRA 87
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 37.0 bits (84), Expect = 0.033 Identities = 34/119 (28%), Positives = 48/119 (40%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AIE +N + RK+ V +S +A F + VY+ N + + E LK Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKER-EAELGARAKEFTN----VYIKNFGEDMDDERLK 208 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 + F + G LS V + KSKG+G N EL G+ I V RA Sbjct: 209 DLFGKFGPALSVKVMT-DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 37.0 bits (84), Expect = 0.033 Identities = 34/119 (28%), Positives = 48/119 (40%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AIE +N + RK+ V +S +A F + VY+ N + + E LK Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKER-EAELGARAKEFTN----VYIKNFGEDMDDERLK 208 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 + F + G LS V + KSKG+G N EL G+ I V RA Sbjct: 209 DLFGKFGPALSVKVMT-DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 37.0 bits (84), Expect = 0.033 Identities = 20/73 (27%), Positives = 33/73 (45%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 ++YVG+L +T ++L+ F G + S + T +SKGYG Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 204 FNNTELEGQTIRV 166 N EL G+ ++V Sbjct: 311 LNGFELAGRPMKV 323
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 37.0 bits (84), Expect = 0.033 Identities = 20/73 (27%), Positives = 33/73 (45%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 ++YVG+L +T ++L+ F G + S + T +SKGYG Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 204 FNNTELEGQTIRV 166 N EL G+ ++V Sbjct: 311 LNGFELAGRPMKV 323
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 37.0 bits (84), Expect = 0.033 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 +YVG+L + + LK++F + G+VL VSR T SKGYG Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYG 89
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 37.0 bits (84), Expect = 0.033 Identities = 24/86 (27%), Positives = 36/86 (41%) Frame = -3 Query: 414 SEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXX 235 S P D++ V+VGNLA + E L +F + G + + R P T KG+ Sbjct: 261 SHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320 Query: 234 XXXXXXXXXXFNNTELEGQTIRVNRA 157 EG+T+R+ RA Sbjct: 321 TMGVDKALLLNEKKMPEGRTLRIMRA 346
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 37.0 bits (84), Expect = 0.033 Identities = 16/53 (30%), Positives = 30/53 (56%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 EP + K+++G L+ + T + L+ F + G++ V R P T +S+G+G Sbjct: 19 EPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFG 71
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 36.6 bits (83), Expect = 0.043 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K+++G L+ + T E L++ F + G + V R P T +S+G+G Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 57
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 36.6 bits (83), Expect = 0.043 Identities = 34/119 (28%), Positives = 47/119 (39%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AIE +N + RK+ V +S +A F + VY+ N + + E LK Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKER-EAELGARAKEFTN----VYIKNFGEDMDDERLK 208 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 F + G LS V + KSKG+G N EL G+ I V RA Sbjct: 209 ELFGKFGPALSVKVMT-DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 36.6 bits (83), Expect = 0.043 Identities = 34/119 (28%), Positives = 47/119 (39%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AIE +N + RK+ V +S +A F + VY+ N + + E LK Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSQKER-EAELGARAKEFTN----VYIKNFGEDMDDERLK 208 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 F + G LS V + KSKG+G N EL G+ I V RA Sbjct: 209 ELFGKFGPALSVKVMT-DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 36.6 bits (83), Expect = 0.043 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K+++G L+ + T E L++ F + G + V R P T +S+G+G Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 57
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 36.6 bits (83), Expect = 0.043 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K+++G L+ + T E L++ F + G + V R P T +S+G+G Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 57
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 36.6 bits (83), Expect = 0.043 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K+++G L+ + T E L++ F + G + V R P T +S+G+G Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 57
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 36.6 bits (83), Expect = 0.043 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K+++G L+ + T E L++ F + G + V R P T +S+G+G Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 57
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 36.6 bits (83), Expect = 0.043 Identities = 17/60 (28%), Positives = 31/60 (51%) Frame = -3 Query: 432 DASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 D P+ + + K+++G L + T E LK F + G ++ V + P T +S+G+G Sbjct: 16 DDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFG 75
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 36.6 bits (83), Expect = 0.043 Identities = 21/92 (22%), Positives = 40/92 (43%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 D K+++G L + + L+ F + G ++ + + T KS+G+ Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64 Query: 216 XXXXFNNTELEGQTIRVNRA*T*QKFRTGGKG 121 N L+G+ I+V +A T F +G +G Sbjct: 65 AARDMNGKSLDGKAIKVEQA-TKPSFESGRRG 95
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 36.2 bits (82), Expect = 0.056 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATV--SRIPGTPKSKGYGXXXXXXXXXXXXXXX 208 ++VGN+ VT E +++ F + G++ T+ R GTPK GY Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGY---IEFESPAYREKAL 122 Query: 207 XFNNTELEGQTIRVNR 160 N EL+G+ I V+R Sbjct: 123 QLNGGELKGKKIAVSR 138
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 36.2 bits (82), Expect = 0.056 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-VYVGNLAKKVTTEVL 337 A+E TEV GR + ++ T + S ES+ + + K + V NL+ + E L Sbjct: 424 ALEEKQGTEVDGRAMVIDYTG------EKSQQESQKGGGERESKTLIVNNLSYAASEETL 477 Query: 336 KNFFSEKGEVLSATVSRIP--GTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRV 166 + F + AT ++P + KGY NNTE+EG+ IR+ Sbjct: 478 QELFKK------ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 530
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 36.2 bits (82), Expect = 0.056 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Frame = -3 Query: 393 SQYK----VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXX 226 S+YK ++VG L ++T + FS+ GE+++ + R T KSKG+ Sbjct: 30 SEYKHSAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRS 89 Query: 225 XXXXXXXFNNTELEGQTIRVN 163 FN +++G+TIRV+ Sbjct: 90 TVLAVDNFNGIKIKGRTIRVD 110
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 36.2 bits (82), Expect = 0.056 Identities = 21/75 (28%), Positives = 33/75 (44%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 ++V L+ LKN FS+ G+V+ A V +P ++ YG Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468 Query: 201 NNTELEGQTIRVNRA 157 + TEL G+ I V +A Sbjct: 469 HRTELHGRMISVEKA 483
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 36.2 bits (82), Expect = 0.056 Identities = 21/72 (29%), Positives = 32/72 (44%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 V+VGN+ V+ + + F++ G V + + P T KGYG Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 201 NNTELEGQTIRV 166 NN+EL + IRV Sbjct: 69 NNSELGPRKIRV 80
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 35.8 bits (81), Expect = 0.074 Identities = 21/72 (29%), Positives = 33/72 (45%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +++G+L + VT E LK F + +SA V T KS G+G Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152 Query: 201 NNTELEGQTIRV 166 N T++ G+ IR+ Sbjct: 153 NYTKVNGKEIRI 164
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 35.8 bits (81), Expect = 0.074 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 +P + K+++G L+ + T + L+ F + G++ V R P T +S+G+G Sbjct: 19 DPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFG 71
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 35.8 bits (81), Expect = 0.074 Identities = 23/73 (31%), Positives = 32/73 (43%) Frame = -3 Query: 375 VGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNN 196 V L + +T E L++ FS GEV SA + R S GYG N Sbjct: 24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG 83 Query: 195 TELEGQTIRVNRA 157 L+ +TI+V+ A Sbjct: 84 LRLQSKTIKVSYA 96
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 35.8 bits (81), Expect = 0.074 Identities = 20/75 (26%), Positives = 34/75 (45%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +YVG L +KV+ +L + G V+S + + T +G+G Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 201 NNTELEGQTIRVNRA 157 N +L G+ I+VN+A Sbjct: 75 NMIKLYGKPIKVNKA 89 Score = 35.4 bits (80), Expect = 0.096 Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 1/132 (0%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AI+ LN ++ G+ IKVN + N+D A ++VGNL +V ++L Sbjct: 70 AIKILNMIKLYGKPIKVNKASAHEKNMDVGA------------NIFVGNLDPEVDEKLLY 117 Query: 333 NFFSEKGEVLSA-TVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 + FS G +L + R + SKG+ N L + I V+ A Sbjct: 118 DTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177 Query: 156 *T*QKFRTGGKG 121 F+ KG Sbjct: 178 -----FKRDSKG 184
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 35.8 bits (81), Expect = 0.074 Identities = 21/92 (22%), Positives = 40/92 (43%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 D K+++G L + + L+ F + G ++ + + T KS+G+ Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64 Query: 216 XXXXFNNTELEGQTIRVNRA*T*QKFRTGGKG 121 N L+G+ I+V +A T F +G +G Sbjct: 65 VARDMNGKSLDGKAIKVEQA-TKPSFESGRRG 95
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 35.4 bits (80), Expect = 0.096 Identities = 20/75 (26%), Positives = 33/75 (44%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 ++V L+ LK+ FS+ G+V+ A V +P ++ YG Sbjct: 453 LWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 512 Query: 201 NNTELEGQTIRVNRA 157 + TEL G+ I V +A Sbjct: 513 HRTELHGRMISVEKA 527
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 35.4 bits (80), Expect = 0.096 Identities = 21/76 (27%), Positives = 35/76 (46%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K+++G L+ L++ F+ G+V+ A V T +S+G+G Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 204 FNNTELEGQTIRVNRA 157 + EL G+ IRVN A Sbjct: 96 MDGKELNGRHIRVNPA 111
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 35.4 bits (80), Expect = 0.096 Identities = 21/74 (28%), Positives = 32/74 (43%) Frame = -3 Query: 378 YVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFN 199 +V L+ LKN FS+ G+V+ A V +P ++ YG + Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468 Query: 198 NTELEGQTIRVNRA 157 TEL G+ I V +A Sbjct: 469 KTELHGKMISVEKA 482
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 35.4 bits (80), Expect = 0.096 Identities = 20/86 (23%), Positives = 38/86 (44%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 K+++G L + + L+ F++ G + V + T +S+G+G Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 204 FNNTELEGQTIRVNRA*T*QKFRTGG 127 N ++G+ IRV++A R GG Sbjct: 66 MNGKSVDGRQIRVDQAGKSSGERRGG 91
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 35.4 bits (80), Expect = 0.096 Identities = 22/94 (23%), Positives = 42/94 (44%) Frame = -3 Query: 438 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 N D +EP + K+++G L + T + LK F + G ++ V + P T +S+G Sbjct: 10 NYDDGEEITEP---EQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRG 66 Query: 258 YGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 +G + +++G+T+ RA Sbjct: 67 FGFITYSQSYMIDNAQNARPH-KIDGRTVEPKRA 99
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 35.0 bits (79), Expect = 0.13 Identities = 21/74 (28%), Positives = 31/74 (41%) Frame = -3 Query: 378 YVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFN 199 +V L+ LKN FS G+V+ A V +P ++ YG + Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 490 Query: 198 NTELEGQTIRVNRA 157 TEL G+ I V +A Sbjct: 491 KTELHGKMISVEKA 504
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 35.0 bits (79), Expect = 0.13 Identities = 25/82 (30%), Positives = 40/82 (48%) Frame = -3 Query: 498 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 319 ++T+ GR K T S +I +S + EPS + ++VGNL + T LK F + Sbjct: 198 SNTDFSGRPSKPANTLSKTASIQSS--KKEPSSI-----LFVGNLDFETTDADLKEHFGQ 250 Query: 318 KGEVLSATVSRIPGTPKSKGYG 253 G++ + T K KG+G Sbjct: 251 VGQIRRVRLMTFEDTGKCKGFG 272
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 35.0 bits (79), Expect = 0.13 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Frame = -3 Query: 393 SQYK----VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXX 226 S+YK +++G L ++T + FS+ GE+++ + R T KSKG+ Sbjct: 30 SEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRS 89 Query: 225 XXXXXXXFNNTELEGQTIRVN 163 FN +++G+TIRV+ Sbjct: 90 TILAVDNFNGIKIKGRTIRVD 110
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 35.0 bits (79), Expect = 0.13 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 2/117 (1%) Frame = -3 Query: 510 IESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKN 331 +E E+ GR + + T + + S ++ + + NL+ T E L+ Sbjct: 449 LEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNS--TWSGESKTLVLSNLSYSATEETLQE 506 Query: 330 FFSEKGEVLSATVSRIPGTP--KSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRV 166 F + AT ++P P KSKGY N E+EG+TIR+ Sbjct: 507 VFEK------ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 557
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 35.0 bits (79), Expect = 0.13 Identities = 21/92 (22%), Positives = 40/92 (43%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 D K+++G L + + L+ F + G ++ + + T KS+G+ Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKD 64 Query: 216 XXXXFNNTELEGQTIRVNRA*T*QKFRTGGKG 121 N L+G+ I+V +A T F +G +G Sbjct: 65 AARDMNGKSLDGKAIKVEQA-TKPFFESGRRG 95
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 35.0 bits (79), Expect = 0.13 Identities = 15/52 (28%), Positives = 29/52 (55%) Frame = -3 Query: 408 PSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 P+ + K+++G L+ + T E L+ F + G + V R P + +S+G+G Sbjct: 7 PNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFG 58
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 34.7 bits (78), Expect = 0.16 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 +P + K+++G L+ + T + L+ F + G + V R P T +S+G+G Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFG 79
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 34.7 bits (78), Expect = 0.16 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 +P + K+++G L+ + T + L+ F + G + V R P T +S+G+G Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFG 79
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 34.7 bits (78), Expect = 0.16 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = -3 Query: 411 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 +P + K+++G L+ + T + L+ F + G + V R P T +S+G+G Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFG 79
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 34.7 bits (78), Expect = 0.16 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNID----ASAPESEPSFVDSQYKVYVGNLAKKVTT 346 A+ L+++ + GR + + +E++ D + ++ PS + ++VGNL+ VT Sbjct: 198 AVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRI-----LFVGNLSFDVTD 252 Query: 345 EVLKNFFSEKGEVLSATVSRIPGTPKSKGY 256 ++L+ F G+++ ++ + K KG+ Sbjct: 253 DLLRKHFQHCGDIVKIRMATFEDSGKCKGF 282
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 34.7 bits (78), Expect = 0.16 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = -3 Query: 387 YKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 YKV++G L VT L+ FF+ G+V + KS+G+G Sbjct: 96 YKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFG 140 Score = 34.7 bits (78), Expect = 0.16 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 D + K++VG L+ + T E L +F G+++ V + + +S+G+G Sbjct: 4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNH 63 Query: 216 XXXXFNNTELEGQTI--RVNRA*T*QKFRTGGKGRI---SRRTPVDEGEFETRFYNKVLK 52 +T L+G+TI + T QK + GG ++ + V E + T F+N+ K Sbjct: 64 VLQNGPHT-LDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRT-FFNRYGK 121 Query: 51 AFDVI 37 +V+ Sbjct: 122 VTEVV 126
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 34.3 bits (77), Expect = 0.21 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 2/116 (1%) Frame = -3 Query: 507 ESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNF 328 E TE+ GR I + T N D ++ +S+ V + NL+ T E L+ Sbjct: 447 EEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLV-LSNLSYSATEETLQEV 505 Query: 327 FSEKGEVLSATVSRIPGTP--KSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRV 166 F + AT ++P KSKGY N E+EG+ IR+ Sbjct: 506 FEK------ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 555
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 34.3 bits (77), Expect = 0.21 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Frame = -3 Query: 441 PNIDASA-PESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSAT-VSRIPGTP- 271 PNID S P+S P Y ++GNL VT E +K FF +G +SA + R P P Sbjct: 83 PNIDRSRLPKSPP------YTAFLGNLPYDVTEESIKEFF--RGLNISAVRLPREPSNPE 134 Query: 270 KSKGYG 253 + KG+G Sbjct: 135 RLKGFG 140
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 34.3 bits (77), Expect = 0.21 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 DS+ + V L + +T E ++ F GE+ S + R T +S GYG Sbjct: 36 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95 Query: 216 XXXXFNNTELEGQTIRVNRA 157 N L+ +TI+V+ A Sbjct: 96 AINTLNGLRLQTKTIKVSYA 115 Score = 29.3 bits (64), Expect = 6.9 Identities = 24/87 (27%), Positives = 40/87 (45%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AI +LN + + IKV+ A S S D+ +YV L K +T + L+ Sbjct: 96 AINTLNGLRLQTKTIKVSY-----------ARPSSASIRDAN--LYVSGLPKTMTQKELE 142 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYG 253 FS+ G ++++ + T S+G G Sbjct: 143 QLFSQYGRIITSRILVDQVTGVSRGVG 169
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 34.3 bits (77), Expect = 0.21 Identities = 22/73 (30%), Positives = 32/73 (43%) Frame = -3 Query: 375 VGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNN 196 V L + +T + L++ FS GEV SA + R S GYG N Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83 Query: 195 TELEGQTIRVNRA 157 L+ +TI+V+ A Sbjct: 84 LRLQSKTIKVSYA 96
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 34.3 bits (77), Expect = 0.21 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 4/92 (4%) Frame = -3 Query: 516 AAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK----VYVGNLAKKVT 349 AA+ + E+ GR + ++++ N A + +F D + V+VGNL+ T Sbjct: 319 AAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNAT 378 Query: 348 TEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 + L F G++ S + P + + KG+G Sbjct: 379 EDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFG 410 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/73 (24%), Positives = 31/73 (42%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 V+VG L+ V + L F E G ++ A V + +SKGYG Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 201 NNTELEGQTIRVN 163 E++G+ + ++ Sbjct: 325 GTKEIDGRMVNLD 337
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 34.3 bits (77), Expect = 0.21 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 2/116 (1%) Frame = -3 Query: 507 ESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNF 328 E TE+ GR I + T N D ++ +S+ V + NL+ T E L+ Sbjct: 448 EEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLV-LSNLSYSATEETLQEV 506 Query: 327 FSEKGEVLSATVSRIPGTP--KSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRV 166 F + AT ++P KSKGY N E+EG+ IR+ Sbjct: 507 FEK------ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 556
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 34.3 bits (77), Expect = 0.21 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 DS+ + V L + +T E ++ F GE+ S + R T +S GYG Sbjct: 43 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 102 Query: 216 XXXXFNNTELEGQTIRVNRA 157 N L+ +TI+V+ A Sbjct: 103 AINTLNGLRLQTKTIKVSYA 122 Score = 29.3 bits (64), Expect = 6.9 Identities = 24/87 (27%), Positives = 40/87 (45%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AI +LN + + IKV+ A S S D+ +YV L K +T + L+ Sbjct: 103 AINTLNGLRLQTKTIKVSY-----------ARPSSASIRDAN--LYVSGLPKTMTQKELE 149 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYG 253 FS+ G ++++ + T S+G G Sbjct: 150 QLFSQYGRIITSRILVDQVTGVSRGVG 176
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 34.3 bits (77), Expect = 0.21 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 2/116 (1%) Frame = -3 Query: 507 ESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNF 328 E TE+ GR I + T N D ++ +S+ V + NL+ T E L+ Sbjct: 446 EEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLV-LSNLSYSATEETLQEV 504 Query: 327 FSEKGEVLSATVSRIPGTP--KSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRV 166 F + AT ++P KSKGY N E+EG+ IR+ Sbjct: 505 FEK------ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 554
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 34.3 bits (77), Expect = 0.21 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 DS+ + V L + +T E ++ F GE+ S + R T +S GYG Sbjct: 48 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 107 Query: 216 XXXXFNNTELEGQTIRVNRA 157 N L+ +TI+V+ A Sbjct: 108 AINTLNGLRLQTKTIKVSYA 127 Score = 29.3 bits (64), Expect = 6.9 Identities = 24/87 (27%), Positives = 40/87 (45%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AI +LN + + IKV+ A S S D+ +YV L K +T + L+ Sbjct: 108 AINTLNGLRLQTKTIKVSY-----------ARPSSASIRDAN--LYVSGLPKTMTQKELE 154 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYG 253 FS+ G ++++ + T S+G G Sbjct: 155 QLFSQYGRIITSRILVDQVTGVSRGVG 181
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 33.9 bits (76), Expect = 0.28 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Frame = -3 Query: 516 AAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEV 340 AAIE +N + +K+ V ++ +S+ + + + VY+ NL ++T + Sbjct: 223 AAIEHVNGMLLNDKKVYVG------HHVSRRERQSKVEALKANFTNVYIKNLDTEITEQE 276 Query: 339 LKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNR 160 + F + GE+ S ++ + K +G+G N+ E +G+ + V R Sbjct: 277 FSDLFGQFGEITSLSLVK-DQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGR 335 Query: 159 A 157 A Sbjct: 336 A 336
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 33.9 bits (76), Expect = 0.28 Identities = 24/89 (26%), Positives = 36/89 (40%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +YVG+L VT +L FS G ++S V R T +S GY Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 201 NNTELEGQTIRVNRA*T*QKFRTGGKGRI 115 N ++G+ IR+ + R G G + Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNV 101
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 33.9 bits (76), Expect = 0.28 Identities = 18/80 (22%), Positives = 38/80 (47%) Frame = -3 Query: 402 FVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXX 223 + D+ Y +Y+GNL +++T + FSE G + +SR T +S+G+ Sbjct: 27 YKDNAY-IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRST 85 Query: 222 XXXXXXFNNTELEGQTIRVN 163 N ++ G+ ++++ Sbjct: 86 ILAVDNLNGFKIGGRALKID 105
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 33.9 bits (76), Expect = 0.28 Identities = 19/61 (31%), Positives = 27/61 (44%) Frame = -3 Query: 339 LKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNR 160 L + FS GEVL + + T +S+G+G N EL+G+ I VN Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62 Query: 159 A 157 A Sbjct: 63 A 63
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 33.5 bits (75), Expect = 0.36 Identities = 23/89 (25%), Positives = 36/89 (40%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +Y+G+L VT +L FS G ++S V R T +S GY Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 201 NNTELEGQTIRVNRA*T*QKFRTGGKGRI 115 N ++G+ IR+ + R G G + Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNV 101
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 33.5 bits (75), Expect = 0.36 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Frame = -3 Query: 465 VNVTESFLPNIDA-SAPESEPSFVDSQYK-VYVGNLAKKVTTEVLKNFFSEKGEVLSATV 292 VNV +P + SA + P F D+ V+VG L+K V+ E LK F GE++ + Sbjct: 275 VNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI 334 Query: 291 SRIPGTPKSKGYG 253 P KG G Sbjct: 335 ------PPGKGCG 341 Score = 30.0 bits (66), Expect = 4.0 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = -3 Query: 393 SQYKVYVGNLAKKVTT-EVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 S+Y ++VG+L+ V +V F S SA + P T S+GYG Sbjct: 184 SEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYG 231
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 33.5 bits (75), Expect = 0.36 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Frame = -3 Query: 441 PNIDASA-PESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSAT-VSRIPGTP- 271 PNID S P+S P Y ++GNL VT + +K+FF +G +SA + R P P Sbjct: 83 PNIDRSRLPKSPP------YTAFLGNLPYDVTEDSIKDFF--RGLNISAVRLPREPSNPD 134 Query: 270 KSKGYG 253 + KG+G Sbjct: 135 RLKGFG 140
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 33.5 bits (75), Expect = 0.36 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Frame = -3 Query: 426 SAPESEPSFVDSQY---KVYVGNLAKKVTT--EVLKNFFSEKGEVLSATVSRIPGTPKSK 262 S ES PS +S +YV NL V T L++ FS G +LS+ ++ P + SK Sbjct: 366 SLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISK 425 Query: 261 GYG 253 GYG Sbjct: 426 GYG 428
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 33.5 bits (75), Expect = 0.36 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Frame = -3 Query: 489 EVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGE 310 E+ K+ + L N + A ++ +D+Q VYVGN+ VT E L++ F+ G Sbjct: 23 EMEAEAAKLRAMQEQLDN-ETEALRNDKESIDAQ-SVYVGNVDYSVTPEELQSHFASCGS 80 Query: 309 VLSATV--SRIPGTPKSKGY 256 V T+ + G PK Y Sbjct: 81 VNRVTILCDKFTGHPKGFAY 100
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 33.1 bits (74), Expect = 0.48 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPK 268 +++GNL K T L+N F GE++ + ++ G P+ Sbjct: 441 LFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQ 478
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 33.1 bits (74), Expect = 0.48 Identities = 22/60 (36%), Positives = 29/60 (48%) Frame = -3 Query: 432 DASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 DAS+ V + V L K T + LK++FS GEVL V + T SKG+G Sbjct: 89 DASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFG 148 Score = 29.3 bits (64), Expect = 6.9 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSR 286 KV+VG + +T E L+ FF + GEV+ + + Sbjct: 192 KVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 224
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 33.1 bits (74), Expect = 0.48 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPK 268 +++GNL K T L+N F GE++ + ++ G P+ Sbjct: 440 LFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQ 477
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 33.1 bits (74), Expect = 0.48 Identities = 19/75 (25%), Positives = 32/75 (42%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 +YVGNL+ V+ L F+E G V + T + +G+G Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 201 NNTELEGQTIRVNRA 157 + E G+ ++VN+A Sbjct: 63 DGAEWMGRDLKVNKA 77
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 32.7 bits (73), Expect = 0.62 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 2/117 (1%) Frame = -3 Query: 510 IESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKN 331 +E E+ GR + + T + + S ++ + + NL+ T E L+ Sbjct: 447 LEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTS--TWSGESKTLVLSNLSYSATKETLEE 504 Query: 330 FFSEKGEVLSATVSRIPGTP--KSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRV 166 F + AT ++P P K KGY N E+EG+TIR+ Sbjct: 505 VFEK------ATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 555
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 32.7 bits (73), Expect = 0.62 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Frame = -3 Query: 450 SFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGT 274 S P A+ S D+ + K++VG L T L+ +F G++ A V T Sbjct: 10 SVFPRPSAAPSAMHGSRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT 69 Query: 273 PKSKGYG 253 KS+GYG Sbjct: 70 GKSRGYG 76
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 32.7 bits (73), Expect = 0.62 Identities = 21/75 (28%), Positives = 30/75 (40%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 VY+ N + E LK F + G LS V KSKG+G Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMT-DDNGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 201 NNTELEGQTIRVNRA 157 N ++ G+++ V RA Sbjct: 252 NGKDMNGKSMFVGRA 266
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 32.7 bits (73), Expect = 0.62 Identities = 22/60 (36%), Positives = 28/60 (46%) Frame = -3 Query: 432 DASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 DAS+ V + V L K T + LK +FS GEVL V + T SKG+G Sbjct: 89 DASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFG 148 Score = 29.3 bits (64), Expect = 6.9 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSR 286 KV+VG + +T + L+ FFS+ G+V+ + + Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 32.7 bits (73), Expect = 0.62 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVS 289 ++Y+GNL VT E LK FS GE+ A ++ Sbjct: 114 RLYIGNLTSDVTEEELKELFSPYGEISEAFIN 145
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 32.7 bits (73), Expect = 0.62 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K+++G L T + L+ +F + G V + + P T +S+G+G Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFG 203 Score = 32.0 bits (71), Expect = 1.1 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 D K++VG + V + + FFS+ G ++ A + T +S+G+G Sbjct: 240 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFG 287
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 32.3 bits (72), Expect = 0.81 Identities = 22/84 (26%), Positives = 33/84 (39%) Frame = -3 Query: 417 ESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXX 238 E +P + ++V NLA VT E+L+ FSE G ++ K K Y Sbjct: 331 EPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG--------KLERVKKLKDYAFVHFE 382 Query: 237 XXXXXXXXXXXFNNTELEGQTIRV 166 N E+EG+ I + Sbjct: 383 DRGAAVKAMDEMNGKEIEGEEIEI 406
>MATK_MENLI (Q7HUK6) Maturase K (Intron maturase)| Length = 506 Score = 32.3 bits (72), Expect = 0.81 Identities = 17/44 (38%), Positives = 27/44 (61%) Frame = -3 Query: 390 QYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 ++K V K+V +E+L+ FF+E+ +VLS T R T S+G Sbjct: 442 KHKSTVRAFLKRVGSELLEEFFTEEEQVLSLTFPRAFSTSTSRG 485
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 32.3 bits (72), Expect = 0.81 Identities = 25/89 (28%), Positives = 38/89 (42%) Frame = -3 Query: 432 DASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 DAS+ S S +YVG+L VT +L + F+E + S + + + +S YG Sbjct: 12 DASSSGSSSPVTAS---LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYG 68 Query: 252 XXXXXXXXXXXXXXXXFNNTELEGQTIRV 166 NN+ L G+ IRV Sbjct: 69 YANFLSRQDANLAIEKKNNSLLNGKMIRV 97 Score = 30.0 bits (66), Expect = 4.0 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 6/93 (6%) Frame = -3 Query: 513 AIESLNDTEVG------GRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKV 352 A E++N T+ G GR K E L E + +YV N+ V Sbjct: 257 AAETVNGTKFGSKCLYVGRAQKKAEREQLLRE-QFKEKHEEQKMIAKVSNIYVKNVNVAV 315 Query: 351 TTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 T E L+ FS+ G + S T KSKG+G Sbjct: 316 TEEELRKHFSQCGTITS-TKLMCDEKGKSKGFG 347
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 32.3 bits (72), Expect = 0.81 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = -3 Query: 408 PSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSR-IPGTPKSKGY 256 P+ ++ V+VGNL +V E+L F + G + T+ + G PKS G+ Sbjct: 3 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGF 54
>MATK_MENLA (Q8MD32) Maturase K (Intron maturase)| Length = 504 Score = 32.3 bits (72), Expect = 0.81 Identities = 17/44 (38%), Positives = 27/44 (61%) Frame = -3 Query: 390 QYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 ++K V K+V +E+L+ FF+E+ +VLS T R T S+G Sbjct: 440 KHKSTVRAFLKRVGSELLEEFFTEEEQVLSLTFPRAFSTSTSRG 483
>MATK_LOACH (Q8MD24) Maturase K (Intron maturase)| Length = 508 Score = 32.3 bits (72), Expect = 0.81 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = -3 Query: 360 KKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 K+V +E+L+ FF+E+ +V S T R+ T S+G Sbjct: 454 KRVGSELLEKFFTEEEQVFSLTFPRVSSTSTSRG 487
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 32.0 bits (71), Expect = 1.1 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGY 256 +Y+G++ K + L+ +F++ G V +SR T SKGY Sbjct: 43 IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGY 84
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 32.0 bits (71), Expect = 1.1 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 2/117 (1%) Frame = -3 Query: 510 IESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKN 331 +E E+ GR + + T + + S ++ + + NL+ T E L+ Sbjct: 446 LEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNS--TWSGESKTLVLSNLSYSATEETLQE 503 Query: 330 FFSEKGEVLSATVSRIPGTP--KSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRV 166 F + AT ++P KSKGY N E+EG+TIR+ Sbjct: 504 VFEK------ATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 554
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 32.0 bits (71), Expect = 1.1 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 K++VG L T L+ +F G++ A V T KS+GYG Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYG 55
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 32.0 bits (71), Expect = 1.1 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 8/102 (7%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 +VY+G L+ V + ++ FFS G +L + GYG Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDL--------KNGYGFVEFEDSRDADDAVYE 54 Query: 204 FNNTELEGQTIRVNRA*T*QK--------FRTGGKGRISRRT 103 N EL G+ + V A ++ R+GG G SRRT Sbjct: 55 LNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRT 96
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 32.0 bits (71), Expect = 1.1 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Frame = -3 Query: 462 NVTESFLPN---IDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATV 292 ++ + LPN A+A + S Y +++ NLA + L F G V S + Sbjct: 374 DMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKI 433 Query: 291 SRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVN 163 + P T + KGYG N + + ++V+ Sbjct: 434 VKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVS 476
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 32.0 bits (71), Expect = 1.1 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Frame = -3 Query: 462 NVTESFLPN---IDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATV 292 ++ + LPN A+A + S Y +++ NLA + L F G V S + Sbjct: 410 DMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKI 469 Query: 291 SRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVN 163 + P T + KGYG N + + ++V+ Sbjct: 470 VKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVS 512
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 31.6 bits (70), Expect = 1.4 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGY 256 +Y+G++ + + L+ +FS+ G V +SR T SKGY Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGY 84
>YQOA_CAEEL (Q09299) Putative RNA-binding protein EEED8.10| Length = 738 Score = 31.2 bits (69), Expect = 1.8 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSR 286 K+ V N++ KVT L++FFS+ G++ S + R Sbjct: 113 KIVVSNISAKVTQSQLQSFFSQYGKITSCILPR 145
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 30.4 bits (67), Expect = 3.1 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 1/140 (0%) Frame = -3 Query: 477 RKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVT-TEVLKNFFSEKGEVLS 301 +K+K+N S N + S + + ++VG+LA VT +++ + F + Sbjct: 136 KKLKLNWATSSYSNSNNSLNNVKSG---NNCSIFVGDLAPNVTESQLFELFINRYASTSH 192 Query: 300 ATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA*T*QKFRTGGKG 121 A + T SKGYG L G+ I+V Q+ +G Sbjct: 193 AKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNND 252 Query: 120 RISRRTPVDEGEFETRFYNK 61 + ++ ++RF +K Sbjct: 253 YNRSSSSLNNENVDSRFLSK 272
>ADEC_METKA (Q8TX47) Adenine deaminase (EC 3.5.4.2) (Adenase) (Adenine aminase)| Length = 599 Score = 30.0 bits (66), Expect = 4.0 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Frame = -3 Query: 501 LNDTEVGGRK---IKVNVTESFLPNIDASAPESEPSFVDSQYKV-YVGNLAKKVTTE 343 L D +GG++ ++ E+ LP+++ S E SF D +Y+V VG + + TE Sbjct: 370 LTDVWIGGKRSERVRFRDAEAELPDVELSVDPREVSFQDGKYEVRCVGLVRGSIRTE 426
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 30.0 bits (66), Expect = 4.0 Identities = 20/84 (23%), Positives = 33/84 (39%) Frame = -3 Query: 417 ESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXX 238 + +P + ++V NLA VT E+L+ FS+ G ++ K K Y Sbjct: 328 DPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG--------KLERVKKLKDYAFIHFD 379 Query: 237 XXXXXXXXXXXFNNTELEGQTIRV 166 N +LEG+ I + Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEI 403
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 30.0 bits (66), Expect = 4.0 Identities = 20/84 (23%), Positives = 33/84 (39%) Frame = -3 Query: 417 ESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXX 238 + +P + ++V NLA VT E+L+ FS+ G ++ K K Y Sbjct: 328 DPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFG--------KLERVKKLKDYAFIHFD 379 Query: 237 XXXXXXXXXXXFNNTELEGQTIRV 166 N +LEG+ I + Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEI 403
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 30.0 bits (66), Expect = 4.0 Identities = 20/84 (23%), Positives = 33/84 (39%) Frame = -3 Query: 417 ESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXX 238 + +P + ++V NLA VT E+L+ FS+ G ++ K K Y Sbjct: 238 DPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFG--------KLERVKKLKDYAFIHFD 289 Query: 237 XXXXXXXXXXXFNNTELEGQTIRV 166 N +LEG+ I + Sbjct: 290 ERDGAVKAMEEMNGKDLEGENIEI 313
>ASPM_CANFA (P62286) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3452 Score = 30.0 bits (66), Expect = 4.0 Identities = 19/47 (40%), Positives = 24/47 (51%) Frame = -3 Query: 402 FVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSK 262 F + K V KK+TT + K+F EK + T SRI TP SK Sbjct: 598 FSPVESKTSVLKKTKKMTTPISKHFNREKLNLKKKTDSRIYRTPNSK 644
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 V+V LA ++T+ L +FF + G V A + R + +SKG Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKG 282
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 29.6 bits (65), Expect = 5.3 Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 4/111 (3%) Frame = -3 Query: 435 IDASAPESEPSFVDSQY----KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPK 268 + S P P V Q +Y G+L KVT L + F V+S V R + Sbjct: 29 VPVSIPLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCR-DQNRR 87 Query: 267 SKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA*T*QKFRTGGKGRI 115 S GY N T L + IR+ + R GKG I Sbjct: 88 SLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNI 138
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 29.6 bits (65), Expect = 5.3 Identities = 18/84 (21%), Positives = 33/84 (39%) Frame = -3 Query: 408 PSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXX 229 P V+ + V NL + + + L+ F + G V + R T +S+G+ Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66 Query: 228 XXXXXXXXFNNTELEGQTIRVNRA 157 + L+G+ +RV A Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMA 90
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 29.6 bits (65), Expect = 5.3 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = -3 Query: 453 ESFLPNIDASAPESEPSFVDSQYK-VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPG 277 +++ PN+D +++P Y+ +++G L + L+ +F + GE+ + + Sbjct: 90 QNWNPNVDPHIKDTDP------YRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKI 143 Query: 276 TPKSKGY 256 T KSKGY Sbjct: 144 TQKSKGY 150
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 29.6 bits (65), Expect = 5.3 Identities = 18/84 (21%), Positives = 33/84 (39%) Frame = -3 Query: 408 PSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXX 229 P V+ + V NL + + + L+ F + G V + R T +S+G+ Sbjct: 6 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65 Query: 228 XXXXXXXXFNNTELEGQTIRVNRA 157 + L+G+ +RV A Sbjct: 66 DAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 29.6 bits (65), Expect = 5.3 Identities = 18/84 (21%), Positives = 33/84 (39%) Frame = -3 Query: 408 PSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXX 229 P V+ + V NL + + + L+ F + G V + R T +S+G+ Sbjct: 6 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65 Query: 228 XXXXXXXXFNNTELEGQTIRVNRA 157 + L+G+ +RV A Sbjct: 66 DAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 29.6 bits (65), Expect = 5.3 Identities = 18/84 (21%), Positives = 33/84 (39%) Frame = -3 Query: 408 PSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXX 229 P V+ + V NL + + + L+ F + G V + R T +S+G+ Sbjct: 6 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65 Query: 228 XXXXXXXXFNNTELEGQTIRVNRA 157 + L+G+ +RV A Sbjct: 66 DAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 29.6 bits (65), Expect = 5.3 Identities = 18/84 (21%), Positives = 33/84 (39%) Frame = -3 Query: 408 PSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXX 229 P V+ + V NL + + + L+ F + G V + R T +S+G+ Sbjct: 6 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 65 Query: 228 XXXXXXXXFNNTELEGQTIRVNRA 157 + L+G+ +RV A Sbjct: 66 DAEDAMDAMDGAVLDGRELRVQMA 89
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 29.6 bits (65), Expect = 5.3 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 12/133 (9%) Frame = -3 Query: 519 AAAIESLNDTEVGGRKIKVNVTESF--LPNIDASAPESEPSFV----------DSQYKVY 376 A A + +N + G+ +K+ + +P I P +P+ V DS +K++ Sbjct: 155 AMAFDGIN---LKGQSLKIRRPHDYQPMPGI-TDTPAIKPAVVSSGVISTVVPDSPHKIF 210 Query: 375 VGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNN 196 +G L + + +K G++ + + + T SKGY N Sbjct: 211 IGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNG 270 Query: 195 TELEGQTIRVNRA 157 +L + + V RA Sbjct: 271 MQLGDKKLIVQRA 283
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKV------NVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKV 352 A+E +D G KI+V +V ++ +A E P S +++GNL K + Sbjct: 611 ALEVSHDKHFFGCKIEVEPYQGYDVEDNEFRPYEAELDEYHPK---STRTLFIGNLEKDI 667 Query: 351 TTEVLKNFFSEKGEVLSATVSR 286 T L++ F GE++ + + Sbjct: 668 TAGELRSHFEAFGEIIEIDIKK 689
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 29.3 bits (64), Expect = 6.9 Identities = 24/98 (24%), Positives = 38/98 (38%) Frame = -3 Query: 396 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 217 D KVYVGNL + ++ F++ G + + V+R P G+ Sbjct: 8 DLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNP-----PGFAFVEFEDRRDAED 62 Query: 216 XXXXFNNTELEGQTIRVNRA*T*QKFRTGGKGRISRRT 103 + T G IRV + + R G+G S R+ Sbjct: 63 ATRALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRS 100
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 29.3 bits (64), Expect = 6.9 Identities = 10/26 (38%), Positives = 19/26 (73%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEV 307 K++VGNL+ T E +++ FS+ G++ Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKI 28
>RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated with lethal| yellow protein) (Maternally expressed hnRNP C-related protein) Length = 312 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/87 (25%), Positives = 36/87 (41%) Frame = -3 Query: 417 ESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXX 238 +++P ++S +V++GNL T V+K E + + R+ G KGY Sbjct: 13 KNDPKSINS--RVFIGNL----NTAVVKK---SDVETIFSKYGRVAGCSVHKGYAFVQYA 63 Query: 237 XXXXXXXXXXXFNNTELEGQTIRVNRA 157 N L GQT+ +N A Sbjct: 64 NERHARAAVLGENGRVLAGQTLDINMA 90
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 ++VGNL T E L FFS+ G+V+ A + G + G Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHRGMG 178
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 29.3 bits (64), Expect = 6.9 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Frame = -3 Query: 420 PESEPS----FVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 P+++PS +++V N+ + L+ F + G++L + I SKG+G Sbjct: 101 PQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI--IFNERGSKGFG 158 Query: 252 XXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 + T +EG+ I VN A Sbjct: 159 FVTFENSADADRAREKLHGTVVEGRKIEVNNA 190
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 29.3 bits (64), Expect = 6.9 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 +VYVGNL KV + L+ F++ G++ S ++ P G+ Sbjct: 8 RVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNP-----PGFAFVEFEHRDDAEKACDI 62 Query: 204 FNNTELEGQTIRVNRA*T*QKFRTGGKGRISRR-TPVDEG 88 N +EL G +RV + G+ R RR P+D G Sbjct: 63 LNGSELLGSQLRVE--------ISKGRPRQGRRGGPMDRG 94
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 29.3 bits (64), Expect = 6.9 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%) Frame = -3 Query: 480 GRKIKVNVTESF--LPNIDASAPESEPSFV-----DSQYKVYVGNLAKKVTTEVLKNFFS 322 G+ +K+ + LP + + P V DS +K+++G L + + +K + Sbjct: 221 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT 280 Query: 321 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 G + + + + T SKGY N +L + + V RA Sbjct: 281 SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 335
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 29.3 bits (64), Expect = 6.9 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%) Frame = -3 Query: 480 GRKIKVNVTESF--LPNIDASAPESEPSFV-----DSQYKVYVGNLAKKVTTEVLKNFFS 322 G+ +K+ + LP + + P V DS +K+++G L + + +K + Sbjct: 221 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT 280 Query: 321 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 G + + + + T SKGY N +L + + V RA Sbjct: 281 SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 335
>SYV_COXBU (Q83DD0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 920 Score = 29.3 bits (64), Expect = 6.9 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 154 LCSIHTDGLSFQFCVVESRNRSFNF 228 + S TD L F FC + SR R NF Sbjct: 574 IASFGTDALRFTFCALASRGRDINF 598
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 29.3 bits (64), Expect = 6.9 Identities = 17/73 (23%), Positives = 29/73 (39%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXF 202 ++VG +AK ++ L FS+ G +LS + + GYG Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 201 NNTELEGQTIRVN 163 N + G T+ +N Sbjct: 257 NGRTVNGSTLFIN 269
>ITB2_PIG (P53714) Integrin beta-2 precursor (Cell surface adhesion| glycoproteins LFA-1/CR3/P150,95 beta-subunit) (Complement receptor C3 beta-subunit) (CD18 antigen) Length = 769 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = -2 Query: 424 CTRIGAFVCGQPVQGLCWQS---CEESDDGSSQELLL*KGGGPQCHGIPNSG 278 C R VCG +GLC+ S C+E +GS+ + L G G+ SG Sbjct: 541 CERFDGQVCGGEKRGLCFCSTCRCQEGFEGSACQCLKSTQGCLNLQGVECSG 592
>YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in chromosome II| Length = 352 Score = 29.3 bits (64), Expect = 6.9 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -3 Query: 420 PESEPSFVD-SQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPG 277 P+ F D + VYV L + +TT+ L+++F GE+L V+ G Sbjct: 164 PQPLNQFTDPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNSG 212
>SYH_PSEPK (Q88PJ6) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 429 Score = 28.9 bits (63), Expect = 9.0 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Frame = -2 Query: 352 DDGSSQELLL*KGGGPQC------HGIPNSGNPKVQGIWFCHVFFRGGS*SCGFYFQQHR 191 +D + L L G C HGI +GN +VQ +W+ FR G Y Q H+ Sbjct: 71 EDRNGDSLTLRPEGTAACVRAVLEHGI--TGNGQVQKLWYIGQMFRHERPQKGRYRQFHQ 128 Query: 190 IG 185 IG Sbjct: 129 IG 130
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/76 (23%), Positives = 32/76 (42%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 +++V N+ + L+ F + G++L + I SKG+G Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEI--IFNERGSKGFGFVTFENSADADRAREK 179 Query: 204 FNNTELEGQTIRVNRA 157 + T +EG+ I VN A Sbjct: 180 LHGTVVEGRKIEVNNA 195
>MATK_HYDMC (Q8WKM6) Maturase K (Intron maturase)| Length = 506 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -3 Query: 390 QYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPK 268 ++K V K+V +E+L+ FF+E+ VLS T R T + Sbjct: 442 KHKSTVRAFLKRVGSELLEEFFTEEEPVLSLTFPRASSTSR 482
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/79 (22%), Positives = 34/79 (43%) Frame = -3 Query: 393 SQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXX 214 + ++++VGNL V E L FSE ++ V R K++G+G Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVR-DREGKTRGFGFVSFKDSDQFLKA 86 Query: 213 XXXFNNTELEGQTIRVNRA 157 N + + ++++RA Sbjct: 87 WREKNGKYIGSRPVKLSRA 105
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 28.9 bits (63), Expect = 9.0 Identities = 26/92 (28%), Positives = 39/92 (42%) Frame = -3 Query: 432 DASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 253 DA SEP F +VGNL+ +T L +FF E V S + P T +S+G+G Sbjct: 84 DAIPIPSEPPFT-----AHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFG 136 Query: 252 XXXXXXXXXXXXXXXXFNNTELEGQTIRVNRA 157 + +L G+ +R+ A Sbjct: 137 -YVEFETADTLSAALALSGEDLMGRPVRITVA 167
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 28.9 bits (63), Expect = 9.0 Identities = 20/92 (21%), Positives = 38/92 (41%) Frame = -3 Query: 438 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 259 N D E P + ++V ++ ++ + ++ F + GE+ + ++ T SKG Sbjct: 56 NEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKG 115 Query: 258 YGXXXXXXXXXXXXXXXXFNNTELEGQTIRVN 163 Y N E+ GQTI+V+ Sbjct: 116 YALVEYETHKQALAAKEALNGAEIMGQTIQVD 147
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSR-IPGTPK 268 ++VGNL KVT E+L F + G V+ + + G PK Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPK 50
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 28.9 bits (63), Expect = 9.0 Identities = 22/87 (25%), Positives = 41/87 (47%) Frame = -3 Query: 513 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 334 AI +LN ++ + IKV+ A S S D+ +YV L K ++ + ++ Sbjct: 96 AINTLNGLKLQTKTIKVSY-----------ARPSSASIRDAN--LYVSGLPKTMSQKEME 142 Query: 333 NFFSEKGEVLSATVSRIPGTPKSKGYG 253 FS+ G ++++ + T S+G G Sbjct: 143 QLFSQYGRIITSRILLDQATGVSRGVG 169
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/76 (23%), Positives = 32/76 (42%) Frame = -3 Query: 384 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 205 +++V N+ + L+ F + G++L + I SKG+G Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEI--IFNERGSKGFGFVTFENSADADRAREK 175 Query: 204 FNNTELEGQTIRVNRA 157 + T +EG+ I VN A Sbjct: 176 LHGTVVEGRKIEVNNA 191
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -3 Query: 381 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSR-IPGTPK 268 ++VGNL KVT E+L F + G V+ + + G PK Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPK 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,333,900 Number of Sequences: 219361 Number of extensions: 1510916 Number of successful extensions: 4338 Number of sequences better than 10.0: 204 Number of HSP's better than 10.0 without gapping: 4124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4326 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
