| Clone Name | rbags14c15 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ250661.1|HVU250661 Hordeum vulgare partial mRNA for putative protein (bci-5 gene) Length = 449 Score = 743 bits (375), Expect = 0.0 Identities = 385/387 (99%), Gaps = 1/387 (0%) Strand = Plus / Minus Query: 1 ttgttattatacaaaaaattgcttagagcc-gagtgaaattacatcaaaggcctttaaaa 59 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 387 ttgttattatacaaaaaattgcttagagccagagtgaaattacatcaaaggcctttaaaa 328 Query: 60 ctttgttataaaatctagtctcaaactccccctcgtctacaggtgttctccgagatattc 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 ctttgttataaaatctagtctcaaactccccctcgtctacaggtgttctccgagatattc 268 Query: 120 tccccttgcctccagtgcgaaatttctgctatgtctatgctctattcacacggatggttt 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 tccccttgcctccagtgcgaaatttctgctatgtctatgctctattcacacggatggttt 208 Query: 180 gtccttccaattctgtgttgttgaaagtagaaaccgcagcttcaacttcctcctctgaag 239 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 207 gtccttccaattctgtgttgttgaaagtagaaaccacagcttcaacttcctcctctgaag 148 Query: 240 aaaacgtgacaaaaccatatcccttggactttggggttcccggaattcgggataccgtgg 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 aaaacgtgacaaaaccatatcccttggactttggggttcccggaattcgggataccgtgg 88 Query: 300 cactgaggacctcccccttttcagagaagaagttcttgagaacttccgtcgtcactttct 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 cactgaggacctcccccttttcagagaagaagttcttgagaacttccgtcgtcactttct 28 Query: 360 tcgcaagattgccaacataaaccttgt 386 ||||||||||||||||||||||||||| Sbjct: 27 tcgcaagattgccaacataaaccttgt 1
>gb|AY090534.1| Deschampsia antarctica plastid-specific ribosomal protein 2 precursor, mRNA, partial cds; nuclear gene for plastid product Length = 561 Score = 603 bits (304), Expect = e-169 Identities = 428/468 (91%), Gaps = 1/468 (0%) Strand = Plus / Minus Query: 31 gagtgaaattacatcaaaggcctttaaaactttgttataaaatctagtctcaaactcccc 90 |||||||||||| ||||||||||||||| |||||| |||| ||||||||||||||| ||| Sbjct: 467 gagtgaaattacgtcaaaggcctttaaa-ctttgtcataagatctagtctcaaacttccc 409 Query: 91 ctcgtctacaggtgttctccgagatattctccccttgcctccagtgcgaaatttctgcta 150 ||||||||| |||||||| ||||| ||||||||||||||| ||| ||||| ||||||| Sbjct: 408 tccgtctacagctgttctccaagataatctccccttgcctccggtgtgaaatatctgcta 349 Query: 151 tgtctatgctctattcacacggatggtttgtccttccaattctgtgttgttgaaagtaga 210 |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct: 348 tgtctatgctctgttcacacggatggcttgtccttctaattctgtgttgttgaaagtaga 289 Query: 211 aaccgcagcttcaacttcctcctctgaagaaaacgtgacaaaaccatatcccttggactt 270 |||||||||||||||||| || || ||||||||||||||||||||| ||||||||||||| Sbjct: 288 aaccgcagcttcaacttcttcgtccgaagaaaacgtgacaaaaccaaatcccttggactt 229 Query: 271 tggggttcccggaattcgggataccgtggcactgaggacctcccccttttcagagaagaa 330 ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 228 tggcgttcctggaactcgggataccgtggcactgaggacctcccccttttcagagaagaa 169 Query: 331 gttcttgagaacttccgtcgtcactttcttcgcaagattgccaacataaaccttgtactg 390 ||||||||| |||||| |||||||| |||| |||||||||||||| |||||||||||||| Sbjct: 168 gttcttgagcacttccatcgtcactgtctttgcaagattgccaacgtaaaccttgtactg 109 Query: 391 gctgtccacaaacgaaggctccgattctggtgcagatgcatcaatgtttggtaagaagct 450 |||||| ||||||| |||||| | ||||| ||||| | ||||||||||||||||||||| Sbjct: 108 gctgtcgacaaacgcaggctctgcctctggagcagacggatcaatgtttggtaagaagct 49 Query: 451 ttctgtcacattcactttaatttttctacctccaacctcggtgtcatt 498 ||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 48 ctctgtcacattcactttaattttcctacctccaacctcagtctcatt 1
>ref|XM_450482.1| Oryza sativa (japonica cultivar-group), mRNA Length = 982 Score = 319 bits (161), Expect = 5e-84 Identities = 308/357 (86%) Strand = Plus / Minus Query: 154 ctatgctctattcacacggatggtttgtccttccaattctgtgttgttgaaagtagaaac 213 ||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||| Sbjct: 777 ctatgctttattcacacggatgggttgtccttccaattccgcattgttgaaagtagaaac 718 Query: 214 cgcagcttcaacttcctcctctgaagaaaacgtgacaaaaccatatcccttggactttgg 273 ||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 717 tgcagcctgaacttcttcctctgaagaaaaggtgacaaaaccatatcccttggactttgc 658 Query: 274 ggttcccggaattcgggataccgtggcactgaggacctcccccttttcagagaagaagtt 333 ||||| ||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| Sbjct: 657 agttcctggaatccgggacacggtggcactgagaacctctcccttttcagagaagaagtt 598 Query: 334 cttgagaacttccgtcgtcactttcttcgcaagattgccaacataaaccttgtactggct 393 || || | || || ||||| |||| |||||||| ||||| |||||||||||||| || Sbjct: 597 tttaagcatctctgtggtcacgctctttgcaagattaccaacgtaaaccttgtactgact 538 Query: 394 gtccacaaacgaaggctccgattctggtgcagatgcatcaatgtttggtaagaagctttc 453 ||||||||| |||||| | |||||||||||| ||||||||| || |||||||| || Sbjct: 537 gtccacaaatacaggctctggttctggtgcagaccgatcaatgttaggcaagaagctctc 478 Query: 454 tgtcacattcactttaatttttctacctccaacctcggtgtcattcaggctctcaat 510 |||||||| || |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 477 cgtcacattaaccttaatttttctaccaccgacctcagtttcattcaggctctcaat 421
>ref|XM_506645.1| PREDICTED Oryza sativa (japonica cultivar-group), P0701E06.36 mRNA Length = 1031 Score = 319 bits (161), Expect = 5e-84 Identities = 308/357 (86%) Strand = Plus / Minus Query: 154 ctatgctctattcacacggatggtttgtccttccaattctgtgttgttgaaagtagaaac 213 ||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||| Sbjct: 826 ctatgctttattcacacggatgggttgtccttccaattccgcattgttgaaagtagaaac 767 Query: 214 cgcagcttcaacttcctcctctgaagaaaacgtgacaaaaccatatcccttggactttgg 273 ||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 766 tgcagcctgaacttcttcctctgaagaaaaggtgacaaaaccatatcccttggactttgc 707 Query: 274 ggttcccggaattcgggataccgtggcactgaggacctcccccttttcagagaagaagtt 333 ||||| ||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| Sbjct: 706 agttcctggaatccgggacacggtggcactgagaacctctcccttttcagagaagaagtt 647 Query: 334 cttgagaacttccgtcgtcactttcttcgcaagattgccaacataaaccttgtactggct 393 || || | || || ||||| |||| |||||||| ||||| |||||||||||||| || Sbjct: 646 tttaagcatctctgtggtcacgctctttgcaagattaccaacgtaaaccttgtactgact 587 Query: 394 gtccacaaacgaaggctccgattctggtgcagatgcatcaatgtttggtaagaagctttc 453 ||||||||| |||||| | |||||||||||| ||||||||| || |||||||| || Sbjct: 586 gtccacaaatacaggctctggttctggtgcagaccgatcaatgttaggcaagaagctctc 527 Query: 454 tgtcacattcactttaatttttctacctccaacctcggtgtcattcaggctctcaat 510 |||||||| || |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 526 cgtcacattaaccttaatttttctaccaccgacctcagtttcattcaggctctcaat 470
>dbj|AK104715.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A04, full insert sequence Length = 982 Score = 319 bits (161), Expect = 5e-84 Identities = 308/357 (86%) Strand = Plus / Minus Query: 154 ctatgctctattcacacggatggtttgtccttccaattctgtgttgttgaaagtagaaac 213 ||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||| Sbjct: 777 ctatgctttattcacacggatgggttgtccttccaattccgcattgttgaaagtagaaac 718 Query: 214 cgcagcttcaacttcctcctctgaagaaaacgtgacaaaaccatatcccttggactttgg 273 ||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 717 tgcagcctgaacttcttcctctgaagaaaaggtgacaaaaccatatcccttggactttgc 658 Query: 274 ggttcccggaattcgggataccgtggcactgaggacctcccccttttcagagaagaagtt 333 ||||| ||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| Sbjct: 657 agttcctggaatccgggacacggtggcactgagaacctctcccttttcagagaagaagtt 598 Query: 334 cttgagaacttccgtcgtcactttcttcgcaagattgccaacataaaccttgtactggct 393 || || | || || ||||| |||| |||||||| ||||| |||||||||||||| || Sbjct: 597 tttaagcatctctgtggtcacgctctttgcaagattaccaacgtaaaccttgtactgact 538 Query: 394 gtccacaaacgaaggctccgattctggtgcagatgcatcaatgtttggtaagaagctttc 453 ||||||||| |||||| | |||||||||||| ||||||||| || |||||||| || Sbjct: 537 gtccacaaatacaggctctggttctggtgcagaccgatcaatgttaggcaagaagctctc 478 Query: 454 tgtcacattcactttaatttttctacctccaacctcggtgtcattcaggctctcaat 510 |||||||| || |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 477 cgtcacattaaccttaatttttctaccaccgacctcagtttcattcaggctctcaat 421
>dbj|AK067492.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110L09, full insert sequence Length = 1030 Score = 319 bits (161), Expect = 5e-84 Identities = 308/357 (86%) Strand = Plus / Minus Query: 154 ctatgctctattcacacggatggtttgtccttccaattctgtgttgttgaaagtagaaac 213 ||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||| Sbjct: 825 ctatgctttattcacacggatgggttgtccttccaattccgcattgttgaaagtagaaac 766 Query: 214 cgcagcttcaacttcctcctctgaagaaaacgtgacaaaaccatatcccttggactttgg 273 ||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 765 tgcagcctgaacttcttcctctgaagaaaaggtgacaaaaccatatcccttggactttgc 706 Query: 274 ggttcccggaattcgggataccgtggcactgaggacctcccccttttcagagaagaagtt 333 ||||| ||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| Sbjct: 705 agttcctggaatccgggacacggtggcactgagaacctctcccttttcagagaagaagtt 646 Query: 334 cttgagaacttccgtcgtcactttcttcgcaagattgccaacataaaccttgtactggct 393 || || | || || ||||| |||| |||||||| ||||| |||||||||||||| || Sbjct: 645 tttaagcatctctgtggtcacgctctttgcaagattaccaacgtaaaccttgtactgact 586 Query: 394 gtccacaaacgaaggctccgattctggtgcagatgcatcaatgtttggtaagaagctttc 453 ||||||||| |||||| | |||||||||||| ||||||||| || |||||||| || Sbjct: 585 gtccacaaatacaggctctggttctggtgcagaccgatcaatgttaggcaagaagctctc 526 Query: 454 tgtcacattcactttaatttttctacctccaacctcggtgtcattcaggctctcaat 510 |||||||| || |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 525 cgtcacattaaccttaatttttctaccaccgacctcagtttcattcaggctctcaat 469
>dbj|AK062461.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D08, full insert sequence Length = 707 Score = 319 bits (161), Expect = 5e-84 Identities = 308/357 (86%) Strand = Plus / Minus Query: 154 ctatgctctattcacacggatggtttgtccttccaattctgtgttgttgaaagtagaaac 213 ||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||| Sbjct: 391 ctatgctttattcacacggatgggttgtccttccaattccgcattgttgaaagtagaaac 332 Query: 214 cgcagcttcaacttcctcctctgaagaaaacgtgacaaaaccatatcccttggactttgg 273 ||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 331 tgcagcctgaacttcttcctctgaagaaaaggtgacaaaaccatatcccttggactttgc 272 Query: 274 ggttcccggaattcgggataccgtggcactgaggacctcccccttttcagagaagaagtt 333 ||||| ||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| Sbjct: 271 agttcctggaatccgggacacggtggcactgagaacctctcccttttcagagaagaagtt 212 Query: 334 cttgagaacttccgtcgtcactttcttcgcaagattgccaacataaaccttgtactggct 393 || || | || || ||||| |||| |||||||| ||||| |||||||||||||| || Sbjct: 211 tttaagcatctctgtggtcacgctctttgcaagattaccaacgtaaaccttgtactgact 152 Query: 394 gtccacaaacgaaggctccgattctggtgcagatgcatcaatgtttggtaagaagctttc 453 ||||||||| |||||| | |||||||||||| ||||||||| || |||||||| || Sbjct: 151 gtccacaaatacaggctctggttctggtgcagaccgatcaatgttaggcaagaagctctc 92 Query: 454 tgtcacattcactttaatttttctacctccaacctcggtgtcattcaggctctcaat 510 |||||||| || |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 91 cgtcacattaaccttaatttttctaccaccgacctcagtttcattcaggctctcaat 35
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 248 bits (125), Expect = 2e-62 Identities = 251/293 (85%) Strand = Plus / Plus Query: 197 ttgttgaaagtagaaaccgcagcttcaacttcctcctctgaagaaaacgtgacaaaacca 256 ||||||||||||||||| ||||| | |||||| |||||||||||||| |||||||||||| Sbjct: 5817715 ttgttgaaagtagaaactgcagcctgaacttcttcctctgaagaaaaggtgacaaaacca 5817774 Query: 257 tatcccttggactttggggttcccggaattcgggataccgtggcactgaggacctccccc 316 |||||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||| ||| Sbjct: 5817775 tatcccttggactttgcagttcctggaatccgggacacggtggcactgagaacctctccc 5817834 Query: 317 ttttcagagaagaagttcttgagaacttccgtcgtcactttcttcgcaagattgccaaca 376 ||||||||||||||||| || || | || || ||||| |||| |||||||| ||||| Sbjct: 5817835 ttttcagagaagaagtttttaagcatctctgtggtcacgctctttgcaagattaccaacg 5817894 Query: 377 taaaccttgtactggctgtccacaaacgaaggctccgattctggtgcagatgcatcaatg 436 |||||||||||||| ||||||||||| |||||| | |||||||||||| ||||||| Sbjct: 5817895 taaaccttgtactgactgtccacaaatacaggctctggttctggtgcagaccgatcaatg 5817954 Query: 437 tttggtaagaagctttctgtcacattcactttaatttttctacctccaacctc 489 || || |||||||| || |||||||| || |||||||||||||| || ||||| Sbjct: 5817955 ttaggcaagaagctctccgtcacattaaccttaatttttctaccaccgacctc 5818007 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 154 ctatgctctattcacacggatggtttgtccttccaattc 192 ||||||| ||||||||||||||| ||||||||||||||| Sbjct: 5817110 ctatgctttattcacacggatgggttgtccttccaattc 5817148
>dbj|AP006528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0651G05 Length = 153258 Score = 248 bits (125), Expect = 2e-62 Identities = 251/293 (85%) Strand = Plus / Plus Query: 197 ttgttgaaagtagaaaccgcagcttcaacttcctcctctgaagaaaacgtgacaaaacca 256 ||||||||||||||||| ||||| | |||||| |||||||||||||| |||||||||||| Sbjct: 9202 ttgttgaaagtagaaactgcagcctgaacttcttcctctgaagaaaaggtgacaaaacca 9261 Query: 257 tatcccttggactttggggttcccggaattcgggataccgtggcactgaggacctccccc 316 |||||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||| ||| Sbjct: 9262 tatcccttggactttgcagttcctggaatccgggacacggtggcactgagaacctctccc 9321 Query: 317 ttttcagagaagaagttcttgagaacttccgtcgtcactttcttcgcaagattgccaaca 376 ||||||||||||||||| || || | || || ||||| |||| |||||||| ||||| Sbjct: 9322 ttttcagagaagaagtttttaagcatctctgtggtcacgctctttgcaagattaccaacg 9381 Query: 377 taaaccttgtactggctgtccacaaacgaaggctccgattctggtgcagatgcatcaatg 436 |||||||||||||| ||||||||||| |||||| | |||||||||||| ||||||| Sbjct: 9382 taaaccttgtactgactgtccacaaatacaggctctggttctggtgcagaccgatcaatg 9441 Query: 437 tttggtaagaagctttctgtcacattcactttaatttttctacctccaacctc 489 || || |||||||| || |||||||| || |||||||||||||| || ||||| Sbjct: 9442 ttaggcaagaagctctccgtcacattaaccttaatttttctaccaccgacctc 9494 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 154 ctatgctctattcacacggatggtttgtccttccaattc 192 ||||||| ||||||||||||||| ||||||||||||||| Sbjct: 8597 ctatgctttattcacacggatgggttgtccttccaattc 8635
>dbj|AP005594.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0701E06 Length = 123415 Score = 248 bits (125), Expect = 2e-62 Identities = 251/293 (85%) Strand = Plus / Plus Query: 197 ttgttgaaagtagaaaccgcagcttcaacttcctcctctgaagaaaacgtgacaaaacca 256 ||||||||||||||||| ||||| | |||||| |||||||||||||| |||||||||||| Sbjct: 113920 ttgttgaaagtagaaactgcagcctgaacttcttcctctgaagaaaaggtgacaaaacca 113979 Query: 257 tatcccttggactttggggttcccggaattcgggataccgtggcactgaggacctccccc 316 |||||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||| ||| Sbjct: 113980 tatcccttggactttgcagttcctggaatccgggacacggtggcactgagaacctctccc 114039 Query: 317 ttttcagagaagaagttcttgagaacttccgtcgtcactttcttcgcaagattgccaaca 376 ||||||||||||||||| || || | || || ||||| |||| |||||||| ||||| Sbjct: 114040 ttttcagagaagaagtttttaagcatctctgtggtcacgctctttgcaagattaccaacg 114099 Query: 377 taaaccttgtactggctgtccacaaacgaaggctccgattctggtgcagatgcatcaatg 436 |||||||||||||| ||||||||||| |||||| | |||||||||||| ||||||| Sbjct: 114100 taaaccttgtactgactgtccacaaatacaggctctggttctggtgcagaccgatcaatg 114159 Query: 437 tttggtaagaagctttctgtcacattcactttaatttttctacctccaacctc 489 || || |||||||| || |||||||| || |||||||||||||| || ||||| Sbjct: 114160 ttaggcaagaagctctccgtcacattaaccttaatttttctaccaccgacctc 114212 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 154 ctatgctctattcacacggatggtttgtccttccaattc 192 ||||||| ||||||||||||||| ||||||||||||||| Sbjct: 113315 ctatgctttattcacacggatgggttgtccttccaattc 113353
>gb|AY112007.1| Zea mays CL10656_1 mRNA sequence Length = 696 Score = 178 bits (90), Expect = 1e-41 Identities = 271/332 (81%), Gaps = 1/332 (0%) Strand = Plus / Minus Query: 139 aaatttctgctatgtctatgctctattcacacggatggtttgtccttccaattctgtgtt 198 |||||||||||| |||| |||||||||||||| ||| || ||||||||||| | ||| Sbjct: 649 aaatttctgctaa-tctaagctctattcacacgaatgagttngccttccaattccgcgtt 591 Query: 199 gttgaaagtagaaaccgcagcttcaacttcctcctctgaagaaaacgtgacaaaaccata 258 |||||||||| ||| |||||||||||||| ||||| ||||| || |||||||| ||||| Sbjct: 590 attgaaagtagcaacagcagcttcaacttcttcctcagaagagaatgtgacaaagccata 531 Query: 259 tcccttggactttggggttcccggaattcgggataccgtggcactgaggacctccccctt 318 ||||| ||||| | ||| |||||||| |||| || || |||||||||| | |||||| Sbjct: 530 cccctttgacttggaggtccccggaatgtgggagactgttgcactgaggatattcccctt 471 Query: 319 ttcagagaagaagttcttgagaacttccgtcgtcactttcttcgcaagattgccaacata 378 ||| ||||||||| |||||||| || || || ||||||||||||| |||||||| Sbjct: 470 ttcggagaagaagnnnnnaagaacttcggttgttacagtcttcgcaagattaccaacata 411 Query: 379 aaccttgtactggctgtccacaaacgaaggctccgattctggtgcagatgcatcaatgtt 438 |||||||||||| || || |||||| || ||| | ||||||||| ||| |||||||| Sbjct: 410 aaccttgtactgactatctacaaacagagcctctggttctggtgctgatcggtcaatgtt 351 Query: 439 tggtaagaagctttctgtcacattcactttaa 470 ||||||||||| ||||| || ||| |||||| Sbjct: 350 cggtaagaagctctctgtgacgttccctttaa 319
>gb|AC114588.9| Mus musculus chromosome 1, clone RP23-363M8, complete sequence Length = 167497 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 306 ggacctcccccttttcagagaag 328 ||||||||||||||||||||||| Sbjct: 79764 ggacctcccccttttcagagaag 79742
>emb|AL845520.9| Mouse DNA sequence from clone RP23-283C20 on chromosome 2, complete sequence Length = 103659 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 309 cctcccccttttcagagaagaag 331 ||||||||||||||||||||||| Sbjct: 89791 cctcccccttttcagagaagaag 89769
>gb|AC108774.10| Mus musculus chromosome 1, clone RP23-249J23, complete sequence Length = 236406 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 tttaaaactttgttataaaatc 74 |||||||||||||||||||||| Sbjct: 184132 tttaaaactttgttataaaatc 184111
>emb|BX942833.8| Zebrafish DNA sequence from clone DKEY-177F17 in linkage group 20 Contains part of the gene for a novel protein similar to rat kinase D-interacting substance of 220 kDa (RGD:619949), complete sequence Length = 42729 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 tttctgtcacattcactttaat 471 |||||||||||||||||||||| Sbjct: 40341 tttctgtcacattcactttaat 40362
>gb|AC099340.3| Homo sapiens BAC clone RP11-214O14 from 4, complete sequence Length = 164958 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 53 tttaaaactttgttataaaatc 74 |||||||||||||||||||||| Sbjct: 74989 tttaaaactttgttataaaatc 75010
>emb|BX470094.10| Mouse DNA sequence from clone RP23-130F16 on chromosome X, complete sequence Length = 22724 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 306 ggacctcccccttttcagagaagaag 331 ||||||||||||| |||||||||||| Sbjct: 14798 ggacctcccccttctcagagaagaag 14773
>gb|AC162614.2| Mus musculus chromosome 7, clone RP23-421O10, complete sequence Length = 219414 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 307 gacctcccccttttcagagaagaag 331 |||||||||||||||||||| |||| Sbjct: 138553 gacctcccccttttcagagatgaag 138529
>gb|AC115120.4| Mus musculus BAC clone RP23-116M23 from 16, complete sequence Length = 222066 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 304 gaggacctcccccttttcagagaag 328 ||||||||||||||| ||||||||| Sbjct: 94718 gaggacctcccccttctcagagaag 94694
>gb|AC137823.45| Medicago truncatula clone mth2-14c17, complete sequence Length = 135139 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 tttaaaactttgttataaaat 73 ||||||||||||||||||||| Sbjct: 79228 tttaaaactttgttataaaat 79208
>gb|AC154258.2| Mus musculus BAC clone RP24-216P24 from chromosome 16, complete sequence Length = 151118 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 310 ctcccccttttcagagaagaa 330 ||||||||||||||||||||| Sbjct: 5743 ctcccccttttcagagaagaa 5723
>gb|AY645797.1| Rana pipiens DAZ-like protein (dazl) mRNA, complete cds Length = 3508 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 247 gacaaaaccatatcccttgga 267 ||||||||||||||||||||| Sbjct: 239 gacaaaaccatatcccttgga 219
>ref|NM_124751.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G53720 mRNA, complete cds Length = 303 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 aaacgtgacaaaaccatatccctt 264 |||||||||||||||| ||||||| Sbjct: 171 aaacgtgacaaaaccaaatccctt 148
>ref|XM_478418.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1302 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 acaaaaccatatcccttgga 267 |||||||||||||||||||| Sbjct: 602 acaaaaccatatcccttgga 583
>ref|XM_478419.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1156 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 acaaaaccatatcccttgga 267 |||||||||||||||||||| Sbjct: 702 acaaaaccatatcccttgga 683
>gb|AC010577.5| Drosophila melanogaster clone BACR22J20, complete sequence Length = 152661 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 attatacaaaaaattgctta 25 |||||||||||||||||||| Sbjct: 137313 attatacaaaaaattgctta 137294
>gb|AC010838.12| Drosophila melanogaster clone BACR13D24, complete sequence Length = 156843 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 attatacaaaaaattgctta 25 |||||||||||||||||||| Sbjct: 120293 attatacaaaaaattgctta 120312
>gb|AC119218.7| Mus musculus chromosome 7, clone RP24-200I20, complete sequence Length = 171061 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 tctgctatgtctatgctctattca 167 ||||||||||||||||||| |||| Sbjct: 78422 tctgctatgtctatgctcttttca 78399
>gb|DQ002810.1| Ateles geoffroyi GH-related protein gene, exon V and partial cds; intergenic spacer arbitrary E6, complete sequence; and GH-related protein gene, exon I Length = 3498 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 acctcccccttttcagagaagaag 331 |||||||||||||||||| ||||| Sbjct: 1216 acctcccccttttcagagcagaag 1193
>emb|CT033771.1| Medicago truncatula chromosome 5 clone mth2-15i14, COMPLETE SEQUENCE Length = 116146 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cttccaattctgtgttgttg 202 |||||||||||||||||||| Sbjct: 104755 cttccaattctgtgttgttg 104774
>gb|AC129212.4| Mus musculus BAC clone RP24-373G21 from chromosome 15, complete sequence Length = 174846 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 acctcccccttttcagagaagaag 331 ||||||||||| |||||||||||| Sbjct: 109807 acctcccccttctcagagaagaag 109784
>gb|AC132619.3| Mus musculus BAC clone RP23-195N4 from chromosome 7, complete sequence Length = 193890 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 304 gaggacctcccccttttcagagaagaag 331 ||||||||||||||| |||||| ||||| Sbjct: 7208 gaggacctcccccttctcagaggagaag 7235
>gb|AC129605.4| Mus musculus BAC clone RP23-121N17 from chromosome 7, complete sequence Length = 232568 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 304 gaggacctcccccttttcagagaagaag 331 ||||||||||||||| |||||| ||||| Sbjct: 185159 gaggacctcccccttctcagaggagaag 185186
>gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete sequence Length = 105599 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcaagattgccaacataaac 381 |||||||||||||||||||| Sbjct: 31424 gcaagattgccaacataaac 31405
>emb|AJ627421.1| Uncultured crenarchaeote genomic fragment 68f19 Length = 35501 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 gagtgaaattacatcaaaggcctt 54 ||||||| |||||||||||||||| Sbjct: 9015 gagtgaatttacatcaaaggcctt 9038
>gb|AC157915.4| Mus musculus chromosome 19, clone RP24-294L7, complete sequence Length = 148975 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 ctcccccttttcagagaagaagtt 333 |||||||||||||||| ||||||| Sbjct: 10890 ctcccccttttcagaggagaagtt 10867
>emb|AL033397.7|HS27K12 Human DNA sequence from clone RP1-27K12 on chromosome 6p11.2-12.3 Contains the GCLC gene for glutamate-cysteine ligase catalytic subunit (GCS), a novel gene and one CpG island, complete sequence Length = 164027 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 agcttcaacttcctcctctg 236 |||||||||||||||||||| Sbjct: 108036 agcttcaacttcctcctctg 108017
>ref|XM_968192.1| PREDICTED: Tribolium castaneum similar to CG6938-PA (LOC662071), mRNA Length = 1426 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 aaaacgtgacaaaaccatat 259 |||||||||||||||||||| Sbjct: 770 aaaacgtgacaaaaccatat 751
>ref|XM_966692.1| PREDICTED: Tribolium castaneum similar to CG14304-PA (LOC660464), mRNA Length = 1266 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 cttcaacttcctcctctgaa 238 |||||||||||||||||||| Sbjct: 808 cttcaacttcctcctctgaa 789
>emb|CR378666.1| Photobacterium profundum SS9; segment 4/12 Length = 348313 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 tagagccgagtgaaattacatcaa 47 ||||||||| |||||||||||||| Sbjct: 262275 tagagccgattgaaattacatcaa 262298
>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence Length = 172435 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tgaagaaaacgtgacaaaac 254 |||||||||||||||||||| Sbjct: 139179 tgaagaaaacgtgacaaaac 139160
>emb|CR932958.2| Medicago truncatula chromosome 5 clone mth2-174i23, COMPLETE SEQUENCE Length = 122746 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gaagaagttcttgagaactt 344 |||||||||||||||||||| Sbjct: 94360 gaagaagttcttgagaactt 94379
>dbj|AK061900.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H03, full insert sequence Length = 1152 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 acaaaaccatatcccttgga 267 |||||||||||||||||||| Sbjct: 124 acaaaaccatatcccttgga 105
>dbj|AK126334.1| Homo sapiens cDNA FLJ44361 fis, clone TRACH3007627 Length = 3606 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 agcttcaacttcctcctctg 236 |||||||||||||||||||| Sbjct: 446 agcttcaacttcctcctctg 465
>dbj|AK125128.1| Homo sapiens cDNA FLJ43138 fis, clone CTONG3007244 Length = 3124 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 agcttcaacttcctcctctg 236 |||||||||||||||||||| Sbjct: 581 agcttcaacttcctcctctg 600
>gb|DQ398933.1| Petromyzon marinus neurofilament subunit NF-132 mRNA, complete cds Length = 2518 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cagcttcaacttcctcctct 235 |||||||||||||||||||| Sbjct: 2192 cagcttcaacttcctcctct 2173
>gb|BC024169.1| Homo sapiens, clone IMAGE:4045462, mRNA Length = 1289 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 aaactttgttataaaatcta 76 |||||||||||||||||||| Sbjct: 495 aaactttgttataaaatcta 476
>gb|BC021699.1|BC021699 Homo sapiens, clone IMAGE:4051863, mRNA Length = 1290 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 aaactttgttataaaatcta 76 |||||||||||||||||||| Sbjct: 495 aaactttgttataaaatcta 476
>dbj|AK149223.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120495J24 product:unclassifiable, full insert sequence Length = 3062 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 304 gaggacctcccccttttcagagaagaag 331 ||||||||||||||| |||||| ||||| Sbjct: 2966 gaggacctcccccttctcagaggagaag 2993
>gb|AC026523.9| Homo sapiens chromosome 15, clone RP11-461F11, complete sequence Length = 175770 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 aaactttgttataaaatcta 76 |||||||||||||||||||| Sbjct: 109057 aaactttgttataaaatcta 109038
>gb|AC018362.8| Homo sapiens chromosome 15 clone RP11-265N6 map 15q15, complete sequence Length = 182288 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 attcactttaatttttctac 479 |||||||||||||||||||| Sbjct: 17666 attcactttaatttttctac 17685
>emb|BX813317.11| Mouse DNA sequence from clone RP24-297H17 on chromosome 2, complete sequence Length = 157571 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 acctcccccttttcagagaagaag 331 ||||||||||| |||||||||||| Sbjct: 107874 acctcccccttctcagagaagaag 107897
>gb|AC159811.2| Mus musculus BAC clone RP24-127J13 from chromosome 9, complete sequence Length = 134895 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ttcaacttcctcctctgaag 239 |||||||||||||||||||| Sbjct: 100708 ttcaacttcctcctctgaag 100689
>gb|BC050580.1| Homo sapiens, clone IMAGE:6010190, mRNA Length = 2879 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 agcttcaacttcctcctctg 236 |||||||||||||||||||| Sbjct: 347 agcttcaacttcctcctctg 366
>emb|BX511005.6| Zebrafish DNA sequence from clone DKEY-72N1 in linkage group 5, complete sequence Length = 139111 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tattatacaaaaaattgctt 24 |||||||||||||||||||| Sbjct: 37834 tattatacaaaaaattgctt 37815
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tgaagaaaacgtgacaaaac 254 |||||||||||||||||||| Sbjct: 16609945 tgaagaaaacgtgacaaaac 16609926
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 acaaaaccatatcccttgga 267 |||||||||||||||||||| Sbjct: 19868266 acaaaaccatatcccttgga 19868247
>gb|AC155831.7| Mus musculus 10 BAC RP24-189B10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 197153 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 ggacctcccccttttcagag 325 |||||||||||||||||||| Sbjct: 71571 ggacctcccccttttcagag 71552
>gb|AC153525.12| Mus musculus 10 BAC RP23-440I21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199418 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 ggacctcccccttttcagag 325 |||||||||||||||||||| Sbjct: 183155 ggacctcccccttttcagag 183136
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 acaaaaccatatcccttgga 267 |||||||||||||||||||| Sbjct: 32916 acaaaaccatatcccttgga 32897
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0650C03 Length = 144337 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 acaaaaccatatcccttgga 267 |||||||||||||||||||| Sbjct: 108425 acaaaaccatatcccttgga 108406
>emb|AL929219.16| Mouse DNA sequence from clone RP23-53I18 on chromosome 2, complete sequence Length = 164107 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 agcttcaacttcctcctctgaaga 240 ||||||||||||||| |||||||| Sbjct: 34249 agcttcaacttcctcatctgaaga 34226
>dbj|AK062798.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C10, full insert sequence Length = 1157 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 acaaaaccatatcccttgga 267 |||||||||||||||||||| Sbjct: 703 acaaaaccatatcccttgga 684
>gb|AC099736.10| Mus musculus chromosome 15, clone RP23-228F5, complete sequence Length = 186137 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 acctcccccttttcagagaagaag 331 ||||||||||| |||||||||||| Sbjct: 30279 acctcccccttctcagagaagaag 30302
>gb|AE003846.5| Drosophila melanogaster chromosome 4, section 5 of 5 of the complete sequence Length = 356494 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 attatacaaaaaattgctta 25 |||||||||||||||||||| Sbjct: 145758 attatacaaaaaattgctta 145777
>gb|AF045535.1|AF045535 Mus musculus proximal side of c3H albino deletion Length = 514 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 304 gaggacctcccccttttcagagaagaag 331 ||||||||||||||| |||||| ||||| Sbjct: 11 gaggacctcccccttctcagaggagaag 38
>emb|AL845370.5| Mouse DNA sequence from clone RP23-272L3 on chromosome 4, complete sequence Length = 162718 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ttttcagagaagaagttctt 336 |||||||||||||||||||| Sbjct: 50150 ttttcagagaagaagttctt 50169
>emb|AL772397.3| Mouse DNA sequence from clone RP23-95M14 on chromosome 4, complete sequence Length = 230672 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 309 cctcccccttttcagagaagaagt 332 |||||||||| ||||||||||||| Sbjct: 94178 cctcccccttctcagagaagaagt 94201
>gb|AC102553.8| Mus musculus chromosome 19, clone RP23-159D6, complete sequence Length = 181534 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 ctcccccttttcagagaagaagtt 333 |||||||||||||||| ||||||| Sbjct: 115212 ctcccccttttcagaggagaagtt 115189 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,728,152 Number of Sequences: 3902068 Number of extensions: 5728152 Number of successful extensions: 114331 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114094 Number of HSP's gapped (non-prelim): 226 length of query: 521 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 498 effective length of database: 17,143,297,704 effective search space: 8537362256592 effective search space used: 8537362256592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)