Clone Information

BLAST Search Result

Clone Name	rbags14c11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK106542.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	383	e-103
2	dbj\|AK099084.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	375	e-100
3	dbj\|AK073215.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	375	e-100
4	ref\|NM_195905.1\| Oryza sativa (japonica cultivar-group) hypothet...	321	2e-84
5	gb\|AC079634.3\|AC079634 Genomic Sequence for Oryza sativa, Nippon...	145	2e-31
6	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	145	2e-31
7	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	145	2e-31
8	gb\|AY109348.1\| Zea mays CL1296_1 mRNA sequence	105	2e-19
9	gb\|AC099615.6\| Mus musculus chromosome 1, clone RP23-412G3, comp...	46	0.14
10	emb\|AL662815.13\| Mouse DNA sequence from clone RP23-361M22 on ch...	46	0.14
11	gb\|AC153899.3\| Mus musculus BAC RP23-128C4 (Roswell Park Cancer...	44	0.57
12	gb\|AC153971.3\| Mus musculus 10 BAC RP24-254O21 (Roswell Park Can...	44	0.57
13	gb\|CP000108.1\| Chlorobium chlorochromatii CaD3, complete genome	42	2.2
14	gb\|AC103376.7\| Mus musculus chromosome 8, clone RP24-226P5, comp...	42	2.2
15	gb\|BC014656.1\| Homo sapiens BCL2-associated athanogene 3, mRNA (...	42	2.2
16	gb\|AC158915.4\| Mus musculus chromosome 8, clone RP23-146N20, com...	42	2.2
17	gb\|BC001445.1\| Homo sapiens cDNA clone IMAGE:3138556, **** WARNI...	42	2.2
18	emb\|BX901910.12\| Zebrafish DNA sequence from clone DKEY-14I8 in ...	42	2.2
19	ref\|NM_004281.3\| Homo sapiens BCL2-associated athanogene 3 (BAG3...	42	2.2
20	emb\|AL137582.1\|HSM802333 Homo sapiens mRNA; cDNA DKFZp434E0610 (...	42	2.2
21	gb\|AC012468.10\| Homo sapiens chromosome 10 clone RP11-179H18, co...	42	2.2
22	gb\|AC159193.2\| Mus musculus BAC clone RP24-68E20 from chromosome...	42	2.2
23	gb\|AC121140.7\| Mus musculus chromosome 8, clone RP23-429G12, com...	42	2.2
24	gb\|AF071218.2\|AF071218 Homo sapiens docking protein CAIR-1 mRNA,...	42	2.2
25	ref\|XM_346122.2\| PREDICTED: Rattus norvegicus similar to MARCO (...	42	2.2
26	gb\|AF127139.1\|AF127139 Homo sapiens Bcl-2-binding protein BIS (B...	42	2.2
27	gb\|AC005874.3\|AC005874 citb_175_g_20, complete sequence	42	2.2
28	gb\|BC006418.1\| Homo sapiens BCL2-associated athanogene 3, mRNA (...	42	2.2
29	gb\|AF095193.2\|AF095193 Homo sapiens BAG-family molecular chapero...	42	2.2
30	gb\|AF134471.2\| Homo sapiens chromosome 10 clone citb_175_g_20_Co...	42	2.2
31	gb\|BC107786.1\| Homo sapiens BCL2-associated athanogene 3, mRNA (...	42	2.2
32	gb\|AC145507.3\| Dasypus novemcinctus clone VMRC5-137J5, complete ...	40	8.9
33	gb\|CP000068.1\| Trypanosoma brucei chromosome 5, complete sequence	40	8.9
34	gb\|AC113585.4\| Trypanosoma brucei chromosome 5 clone RPCI93-27M3...	40	8.9
35	gb\|AC103597.21\| Mus musculus chromosome 18, clone RP23-435G4, co...	40	8.9
36	ref\|XM_744458.1\| Aspergillus fumigatus Af293 hypothetical protei...	40	8.9
37	gb\|AC126695.4\| Mus musculus BAC clone RP23-313D2 from 18, comple...	40	8.9
38	gb\|AC154498.2\| Mus musculus BAC clone RP24-112F5 from chromosome...	40	8.9
39	emb\|AL450312.10\| Human DNA sequence from clone RP11-138L24 on ch...	40	8.9
40	emb\|AL445585.8\| Human DNA sequence from clone RP11-54A3 on chrom...	40	8.9
41	emb\|AL355805.20\| Human DNA sequence from clone RP11-29L10 on chr...	40	8.9
42	emb\|BX005109.23\| Zebrafish DNA sequence from clone CH211-284K5 i...	40	8.9
43	dbj\|AP003603.1\| Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, co...	40	8.9
44	gb\|AC122209.5\| Mus musculus BAC clone RP23-96B17 from chromosome...	40	8.9
45	gb\|AC157773.6\| Mus musculus chromosome 8, clone RP24-161L20, com...	40	8.9
46	gb\|AC009741.5\|AC009741 Drosophila melanogaster, chromosome 3R, r...	40	8.9
47	gb\|AC007724.4\|AC007724 Drosophila melanogaster, chromosome 3R, r...	40	8.9
48	gb\|AC019127.10\| Homo sapiens BAC clone RP11-558B7 from 2, comple...	40	8.9
49	ref\|XM_233867.3\| PREDICTED: Rattus norvegicus anaplastic lymphom...	40	8.9
50	gb\|AC158127.3\| Mus musculus chromosome 19, clone RP23-135N12, co...	40	8.9
51	gb\|AC111065.20\| Mus musculus chromosome 19, clone RP23-315E4, co...	40	8.9
52	gb\|AE003695.2\| Drosophila melanogaster chromosome 3R, section 33...	40	8.9
53	gb\|AC121131.14\| Mus musculus chromosome 8, clone RP23-187D7, com...	40	8.9
54	gb\|AE015451.1\| Pseudomonas putida KT2440 complete genome	40	8.9
55	gb\|AE016877.1\| Bacillus cereus ATCC 14579, complete genome	40	8.9
56	emb\|AL935061.15\| Mouse DNA sequence from clone RP23-186P20 on ch...	40	8.9
57	dbj\|AP006374.1\| Lotus japonicus genomic DNA, chromosome 5, clone...	40	8.9
58	emb\|AL773564.8\| Zebrafish DNA sequence from clone CH211-204C7, c...	40	8.9
59	emb\|AL837522.8\| Mouse DNA sequence from clone RP23-264L10 on chr...	40	8.9
60	emb\|AJ277952.1\|SDO277952 Suberites domuncula snzerr gene for err...	40	8.9

>dbj|AK106542.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E10, full
            insert sequence
          Length = 1476

 Score =  383 bits (193), Expect = e-103
 Identities = 349/401 (87%)
 Strand = Plus / Minus

                                                                        
Query: 231  aaagttttcagaaagactgcgctgtgacaaacggtagtagagaattcccatcgttgctat 290
            |||||| || ||||||||||| |||| ||||||||| || || || ||||| ||||||||
Sbjct: 1180 aaagttctcggaaagactgcgttgtgtcaaacggtaataaagtatccccattgttgctat 1121

                                                                        
Query: 291  acatgccatgattgccattgcgagtaagatctttgtgggatccattcgtgatgtcctctg 350
            |||||||||||| |||| ||| |||||||||||||| |||||||||| |||||   | ||
Sbjct: 1120 acatgccatgatcgccaatgcaagtaagatctttgtaggatccattcttgatgatttttg 1061

                                                                        
Query: 351  atgtctgggccggccttctgaagcatcattttcctttttagggggtgctgtaactggtaa 410
            |||||  |  ||||| |||| ||||||| | || ||| |||| |||||||||||||| | 
Sbjct: 1060 atgtcgtgaacggccctctggagcatcactctcttttctaggaggtgctgtaactggcag 1001

                                                                        
Query: 411  tgttggcagtgcactggaccaaaaaggtagcagcatccttaaaaatttgtgacggtatgt 470
            |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct: 1000 tgttggcaatgcactggaccagaaaggtagcagcatccttagaaatttgtgacggaatgt 941

                                                                        
Query: 471  accccttttagtatattttttgcggtttgcatcttcatcatcagcataataagacatctc 530
            ||||||||| ||||| || ||||||||||| || |||||||||||||||||||| |||||
Sbjct: 940  accccttttggtatacttcttgcggtttgcgtcctcatcatcagcataataagaaatctc 881

                                                                        
Query: 531  tgaattttgtctctcgacatagttagcaccttttcttgtcgtagcactaggcccgtgcgg 590
            ||||||||||||||| |||||||||||||||||||||||| | ||||| ||||| || ||
Sbjct: 880  tgaattttgtctctcaacatagttagcaccttttcttgtcatggcactcggcccatgtgg 821

                                                     
Query: 591  gcttggacttctgatgaaattgggctcctgctctgggaact 631
            ||| |||||||||||||| |||| |||||| || |||||||
Sbjct: 820  gctaggacttctgatgaagttggactcctgttcagggaact 780

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>dbj|AK099084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005I07, full
            insert sequence
          Length = 1449

 Score =  375 bits (189), Expect = e-100
 Identities = 348/401 (86%)
 Strand = Plus / Minus

                                                                        
Query: 231  aaagttttcagaaagactgcgctgtgacaaacggtagtagagaattcccatcgttgctat 290
            |||||| || ||||||||||| |||| ||||||||| || || || ||||| ||||||||
Sbjct: 1181 aaagttctcggaaagactgcgttgtgtcaaacggtaataaagtatccccattgttgctat 1122

                                                                        
Query: 291  acatgccatgattgccattgcgagtaagatctttgtgggatccattcgtgatgtcctctg 350
            |||||||||||| |||| ||| |||||||||||||| ||| |||||| |||||   | ||
Sbjct: 1121 acatgccatgatcgccaatgcaagtaagatctttgtaggacccattcttgatgatttttg 1062

                                                                        
Query: 351  atgtctgggccggccttctgaagcatcattttcctttttagggggtgctgtaactggtaa 410
            |||||  |  ||||| |||| ||||||| | || ||| |||| |||||||||||||| | 
Sbjct: 1061 atgtcgtgaacggccctctggagcatcactctcttttctaggaggtgctgtaactggcag 1002

                                                                        
Query: 411  tgttggcagtgcactggaccaaaaaggtagcagcatccttaaaaatttgtgacggtatgt 470
            |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct: 1001 tgttggcaatgcactggaccagaaaggtagcagcatccttagaaatttgtgacggaatgt 942

                                                                        
Query: 471  accccttttagtatattttttgcggtttgcatcttcatcatcagcataataagacatctc 530
            ||||||||| ||||| || ||||||||||| || |||||||||||||||||||| |||||
Sbjct: 941  accccttttggtatacttcttgcggtttgcgtcctcatcatcagcataataagaaatctc 882

                                                                        
Query: 531  tgaattttgtctctcgacatagttagcaccttttcttgtcgtagcactaggcccgtgcgg 590
            ||||||||||||||| |||||||||||||||||||||||| | ||||| ||||| || ||
Sbjct: 881  tgaattttgtctctcaacatagttagcaccttttcttgtcatggcactcggcccatgtgg 822

                                                     
Query: 591  gcttggacttctgatgaaattgggctcctgctctgggaact 631
            ||| |||||||||||||| |||| |||||| || |||||||
Sbjct: 821  gctaggacttctgatgaagttggactcctgttcagggaact 781

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>dbj|AK073215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033015K15, full
            insert sequence
          Length = 1474

 Score =  375 bits (189), Expect = e-100
 Identities = 348/401 (86%)
 Strand = Plus / Minus

                                                                        
Query: 231  aaagttttcagaaagactgcgctgtgacaaacggtagtagagaattcccatcgttgctat 290
            |||||| || ||||||||||| |||| ||||||||| || || || ||||| ||||||||
Sbjct: 1181 aaagttctcggaaagactgcgttgtgtcaaacggtaataaagtatccccattgttgctat 1122

                                                                        
Query: 291  acatgccatgattgccattgcgagtaagatctttgtgggatccattcgtgatgtcctctg 350
            |||||||||||| |||| ||| |||||||||||||| |||||||||| |||||   | ||
Sbjct: 1121 acatgccatgatcgccaatgcaagtaagatctttgtaggatccattcttgatgatttttg 1062

                                                                        
Query: 351  atgtctgggccggccttctgaagcatcattttcctttttagggggtgctgtaactggtaa 410
            |||||  |  ||||| |||| |||||||   || ||| |||| |||||||||||||| | 
Sbjct: 1061 atgtcgtgaacggccctctggagcatcaccctcttttctaggaggtgctgtaactggcag 1002

                                                                        
Query: 411  tgttggcagtgcactggaccaaaaaggtagcagcatccttaaaaatttgtgacggtatgt 470
            |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct: 1001 tgttggcaatgcactggaccagaaaggtagcagcatccttagaaatttgtgacggaatgt 942

                                                                        
Query: 471  accccttttagtatattttttgcggtttgcatcttcatcatcagcataataagacatctc 530
            ||||||||| ||||| || ||||||||||| || |||||||||||||||||||| |||||
Sbjct: 941  accccttttggtatacttcttgcggtttgcgtcctcatcatcagcataataagaaatctc 882

                                                                        
Query: 531  tgaattttgtctctcgacatagttagcaccttttcttgtcgtagcactaggcccgtgcgg 590
            ||||||||||||||| |||||||||||||||||||||||| | ||||| ||||| || ||
Sbjct: 881  tgaattttgtctctcaacatagttagcaccttttcttgtcatggcactcggcccatgtgg 822

                                                     
Query: 591  gcttggacttctgatgaaattgggctcctgctctgggaact 631
            ||| |||||||||||||| |||| |||||| || |||||||
Sbjct: 821  gctaggacttctgatgaagttggactcctgttcagggaact 781

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>ref|NM_195905.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0045C13.14), mRNA
          Length = 1152

 Score =  321 bits (162), Expect = 2e-84
 Identities = 291/334 (87%)
 Strand = Plus / Minus

                                                                        
Query: 298  atgattgccattgcgagtaagatctttgtgggatccattcgtgatgtcctctgatgtctg 357
            ||||| |||| ||| |||||||||||||| |||||||||| |||||   | |||||||  
Sbjct: 1040 atgatcgccaatgcaagtaagatctttgtaggatccattcttgatgatttttgatgtcgt 981

                                                                        
Query: 358  ggccggccttctgaagcatcattttcctttttagggggtgctgtaactggtaatgttggc 417
            |  ||||| |||| ||||||| | || ||| |||| |||||||||||||| | |||||||
Sbjct: 980  gaacggccctctggagcatcactctcttttctaggaggtgctgtaactggcagtgttggc 921

                                                                        
Query: 418  agtgcactggaccaaaaaggtagcagcatccttaaaaatttgtgacggtatgtacccctt 477
            | |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 920  aatgcactggaccagaaaggtagcagcatccttagaaatttgtgacggaatgtacccctt 861

                                                                        
Query: 478  ttagtatattttttgcggtttgcatcttcatcatcagcataataagacatctctgaattt 537
            || ||||| || ||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 860  ttggtatacttcttgcggtttgcgtcctcatcatcagcataataagaaatctctgaattt 801

                                                                        
Query: 538  tgtctctcgacatagttagcaccttttcttgtcgtagcactaggcccgtgcgggcttgga 597
            |||||||| |||||||||||||||||||||||| | ||||| ||||| || ||||| |||
Sbjct: 800  tgtctctcaacatagttagcaccttttcttgtcatggcactcggcccatgtgggctagga 741

                                              
Query: 598  cttctgatgaaattgggctcctgctctgggaact 631
            ||||||||||| |||| |||||| || |||||||
Sbjct: 740  cttctgatgaagttggactcctgttcagggaact 707

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>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0045C13, from Chromosome 10, complete sequence
          Length = 161250

 Score =  145 bits (73), Expect = 2e-31
 Identities = 151/177 (85%)
 Strand = Plus / Minus

                                                                          
Query: 297    catgattgccattgcgagtaagatctttgtgggatccattcgtgatgtcctctgatgtct 356
              |||||| |||| ||| |||||||||||||| |||||||||| |||||   | ||||||| 
Sbjct: 104216 catgatcgccaatgcaagtaagatctttgtaggatccattcttgatgatttttgatgtcg 104157

                                                                          
Query: 357    gggccggccttctgaagcatcattttcctttttagggggtgctgtaactggtaatgttgg 416
               |  ||||| |||| ||||||| | || ||| |||| |||||||||||||| | ||||||
Sbjct: 104156 tgaacggccctctggagcatcactctcttttctaggaggtgctgtaactggcagtgttgg 104097

                                                                       
Query: 417    cagtgcactggaccaaaaaggtagcagcatccttaaaaatttgtgacggtatgtacc 473
              || |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 104096 caatgcactggaccagaaaggtagcagcatccttagaaatttgtgacggaatgtacc 104040



 Score =  145 bits (73), Expect = 2e-31
 Identities = 94/101 (93%)
 Strand = Plus / Minus

                                                                          
Query: 470    taccccttttagtatattttttgcggtttgcatcttcatcatcagcataataagacatct 529
              |||||||||| ||||| || ||||||||||| || |||||||||||||||||||| ||||
Sbjct: 103242 taccccttttggtatacttcttgcggtttgcgtcctcatcatcagcataataagaaatct 103183

                                                       
Query: 530    ctgaattttgtctctcgacatagttagcaccttttcttgtc 570
              |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 103182 ctgaattttgtctctcaacatagttagcaccttttcttgtc 103142



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                          
Query: 231    aaagttttcagaaagactgcgctgtgacaaacggtagtagagaattcccatcgttgctat 290
              |||||| || ||||||||||| |||| ||||||||| || || || ||||| ||||||||
Sbjct: 105115 aaagttctcggaaagactgcgttgtgtcaaacggtaataaagtatccccattgttgctat 105056

                     
Query: 291    acatgcc 297
              |||||||
Sbjct: 105055 acatgcc 105049



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 589    gggcttggacttctgatgaaattgggctcctgctctgggaact 631
              ||||| |||||||||||||| |||| |||||| || |||||||
Sbjct: 103023 gggctaggacttctgatgaagttggactcctgttcagggaact 102981

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  145 bits (73), Expect = 2e-31
 Identities = 151/177 (85%)
 Strand = Plus / Minus

                                                                           
Query: 297     catgattgccattgcgagtaagatctttgtgggatccattcgtgatgtcctctgatgtct 356
               |||||| |||| ||| |||||||||||||| |||||||||| |||||   | ||||||| 
Sbjct: 9871737 catgatcgccaatgcaagtaagatctttgtaggatccattcttgatgatttttgatgtcg 9871678

                                                                           
Query: 357     gggccggccttctgaagcatcattttcctttttagggggtgctgtaactggtaatgttgg 416
                |  ||||| |||| ||||||| | || ||| |||| |||||||||||||| | ||||||
Sbjct: 9871677 tgaacggccctctggagcatcactctcttttctaggaggtgctgtaactggcagtgttgg 9871618

                                                                        
Query: 417     cagtgcactggaccaaaaaggtagcagcatccttaaaaatttgtgacggtatgtacc 473
               || |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 9871617 caatgcactggaccagaaaggtagcagcatccttagaaatttgtgacggaatgtacc 9871561



 Score =  145 bits (73), Expect = 2e-31
 Identities = 94/101 (93%)
 Strand = Plus / Minus

                                                                           
Query: 470     taccccttttagtatattttttgcggtttgcatcttcatcatcagcataataagacatct 529
               |||||||||| ||||| || ||||||||||| || |||||||||||||||||||| ||||
Sbjct: 9870763 taccccttttggtatacttcttgcggtttgcgtcctcatcatcagcataataagaaatct 9870704

                                                        
Query: 530     ctgaattttgtctctcgacatagttagcaccttttcttgtc 570
               |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9870703 ctgaattttgtctctcaacatagttagcaccttttcttgtc 9870663



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                           
Query: 231     aaagttttcagaaagactgcgctgtgacaaacggtagtagagaattcccatcgttgctat 290
               |||||| || ||||||||||| |||| ||||||||| || || || ||||| ||||||||
Sbjct: 9872636 aaagttctcggaaagactgcgttgtgtcaaacggtaataaagtatccccattgttgctat 9872577

                      
Query: 291     acatgcc 297
               |||||||
Sbjct: 9872576 acatgcc 9872570



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 589     gggcttggacttctgatgaaattgggctcctgctctgggaact 631
               ||||| |||||||||||||| |||| |||||| || |||||||
Sbjct: 9870544 gggctaggacttctgatgaagttggactcctgttcagggaact 9870502

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  145 bits (73), Expect = 2e-31
 Identities = 151/177 (85%)
 Strand = Plus / Minus

                                                                           
Query: 297     catgattgccattgcgagtaagatctttgtgggatccattcgtgatgtcctctgatgtct 356
               |||||| |||| ||| |||||||||||||| |||||||||| |||||   | ||||||| 
Sbjct: 9877776 catgatcgccaatgcaagtaagatctttgtaggatccattcttgatgatttttgatgtcg 9877717

                                                                           
Query: 357     gggccggccttctgaagcatcattttcctttttagggggtgctgtaactggtaatgttgg 416
                |  ||||| |||| ||||||| | || ||| |||| |||||||||||||| | ||||||
Sbjct: 9877716 tgaacggccctctggagcatcactctcttttctaggaggtgctgtaactggcagtgttgg 9877657

                                                                        
Query: 417     cagtgcactggaccaaaaaggtagcagcatccttaaaaatttgtgacggtatgtacc 473
               || |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 9877656 caatgcactggaccagaaaggtagcagcatccttagaaatttgtgacggaatgtacc 9877600



 Score =  145 bits (73), Expect = 2e-31
 Identities = 94/101 (93%)
 Strand = Plus / Minus

                                                                           
Query: 470     taccccttttagtatattttttgcggtttgcatcttcatcatcagcataataagacatct 529
               |||||||||| ||||| || ||||||||||| || |||||||||||||||||||| ||||
Sbjct: 9876802 taccccttttggtatacttcttgcggtttgcgtcctcatcatcagcataataagaaatct 9876743

                                                        
Query: 530     ctgaattttgtctctcgacatagttagcaccttttcttgtc 570
               |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9876742 ctgaattttgtctctcaacatagttagcaccttttcttgtc 9876702



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                           
Query: 231     aaagttttcagaaagactgcgctgtgacaaacggtagtagagaattcccatcgttgctat 290
               |||||| || ||||||||||| |||| ||||||||| || || || ||||| ||||||||
Sbjct: 9878675 aaagttctcggaaagactgcgttgtgtcaaacggtaataaagtatccccattgttgctat 9878616

                      
Query: 291     acatgcc 297
               |||||||
Sbjct: 9878615 acatgcc 9878609



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 589     gggcttggacttctgatgaaattgggctcctgctctgggaact 631
               ||||| |||||||||||||| |||| |||||| || |||||||
Sbjct: 9876583 gggctaggacttctgatgaagttggactcctgttcagggaact 9876541

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>gb|AY109348.1| Zea mays CL1296_1 mRNA sequence
          Length = 2139

 Score =  105 bits (53), Expect = 2e-19
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                        
Query: 394  ggtgctgtaactggtaatgttggcagtgcactggaccaaaaaggtagcagcatccttaaa 453
            |||||||| |||||||  |||||||||||||||||||| || || ||||||||||||| |
Sbjct: 1709 ggtgctgtgactggtagcgttggcagtgcactggaccagaacggcagcagcatccttaga 1650

                                         
Query: 454  aatttgtgacggtatgtaccccttttagt 482
            |||||||||||  ||||||||||||||||
Sbjct: 1649 aatttgtgacgaaatgtaccccttttagt 1621



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 90/104 (86%)
 Strand = Plus / Minus

                                                                        
Query: 510  atcagcataataagacatctctgaattttgtctctcgacatagttagcaccttttcttgt 569
            ||||||||||||||| ||||| ||||||||||| || |||   ||||| |||||||||||
Sbjct: 1593 atcagcataataagaaatctcagaattttgtctatcaacagtattagcgccttttcttgt 1534

                                                        
Query: 570  cgtagcactaggcccgtgcgggcttggacttctgatgaaattgg 613
            | |||||| |||||| || ||||||||||| |||||||| ||||
Sbjct: 1533 catagcaccaggcccatgtgggcttggactcctgatgaagttgg 1490

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>gb|AC099615.6| Mus musculus chromosome 1, clone RP23-412G3, complete sequence
          Length = 204191

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 522   agacatctctgaattttgtctct 544
             |||||||||||||||||||||||
Sbjct: 13311 agacatctctgaattttgtctct 13289

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>emb|AL662815.13| Mouse DNA sequence from clone RP23-361M22 on chromosome 1 Contains part
             of the gene for ortholog of human amyotrophic lateral
             sclerosis 2 (juvenile) chromosome region candidate 19
             (ALS2CR19) and a novel gene, complete sequence
          Length = 155204

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 522   agacatctctgaattttgtctct 544
             |||||||||||||||||||||||
Sbjct: 80235 agacatctctgaattttgtctct 80257

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>gb|AC153899.3| Mus musculus  BAC RP23-128C4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 164582

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 176   taccagaaacaaactgcaagaa 197
             ||||||||||||||||||||||
Sbjct: 17841 taccagaaacaaactgcaagaa 17820

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>gb|AC153971.3| Mus musculus 10 BAC RP24-254O21 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 159743

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 176   taccagaaacaaactgcaagaa 197
             ||||||||||||||||||||||
Sbjct: 50794 taccagaaacaaactgcaagaa 50815

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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 132     aataatacaagcagggtaaaa 152
               |||||||||||||||||||||
Sbjct: 1826343 aataatacaagcagggtaaaa 1826363

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>gb|AC103376.7| Mus musculus chromosome 8, clone RP24-226P5, complete sequence
          Length = 165714

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 390    agggggtgctgtaactggtaa 410
              |||||||||||||||||||||
Sbjct: 113088 agggggtgctgtaactggtaa 113068

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>gb|BC014656.1| Homo sapiens BCL2-associated athanogene 3, mRNA (cDNA clone MGC:20407
            IMAGE:4636684), complete cds
          Length = 2294

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 371  aagcatcattttcctttttag 391
            |||||||||||||||||||||
Sbjct: 1908 aagcatcattttcctttttag 1888

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>gb|AC158915.4| Mus musculus chromosome 8, clone RP23-146N20, complete sequence
          Length = 207367

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 525   catctctgaattttgtctctc 545
             |||||||||||||||||||||
Sbjct: 49312 catctctgaattttgtctctc 49292

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>gb|BC001445.1| Homo sapiens cDNA clone IMAGE:3138556, **** WARNING: chimeric clone
            ****
          Length = 3719

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 371  aagcatcattttcctttttag 391
            |||||||||||||||||||||
Sbjct: 1996 aagcatcattttcctttttag 1976

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>emb|BX901910.12| Zebrafish DNA sequence from clone DKEY-14I8 in linkage group 7,
             complete sequence
          Length = 131855

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 521   aagacatctctgaattttgtc 541
             |||||||||||||||||||||
Sbjct: 96784 aagacatctctgaattttgtc 96764

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>ref|NM_004281.3| Homo sapiens BCL2-associated athanogene 3 (BAG3), mRNA
          Length = 2608

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 371  aagcatcattttcctttttag 391
            |||||||||||||||||||||
Sbjct: 2203 aagcatcattttcctttttag 2183

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>emb|AL137582.1|HSM802333 Homo sapiens mRNA; cDNA DKFZp434E0610 (from clone DKFZp434E0610);
            partial cds
          Length = 2089

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 371  aagcatcattttcctttttag 391
            |||||||||||||||||||||
Sbjct: 2020 aagcatcattttcctttttag 2000

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>gb|AC012468.10| Homo sapiens chromosome 10 clone RP11-179H18, complete sequence
          Length = 146578

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 371    aagcatcattttcctttttag 391
              |||||||||||||||||||||
Sbjct: 138057 aagcatcattttcctttttag 138037

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>gb|AC159193.2| Mus musculus BAC clone RP24-68E20 from chromosome 12, complete sequence
          Length = 243976

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 204    actctactactgagcctcatc 224
              |||||||||||||||||||||
Sbjct: 150231 actctactactgagcctcatc 150211

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>gb|AC121140.7| Mus musculus chromosome 8, clone RP23-429G12, complete sequence
          Length = 201440

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 525  catctctgaattttgtctctc 545
            |||||||||||||||||||||
Sbjct: 2381 catctctgaattttgtctctc 2361

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>gb|AF071218.2|AF071218 Homo sapiens docking protein CAIR-1 mRNA, complete cds
          Length = 2534

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 371  aagcatcattttcctttttag 391
            |||||||||||||||||||||
Sbjct: 2203 aagcatcattttcctttttag 2183

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>ref|XM_346122.2| PREDICTED: Rattus norvegicus similar to MARCO (LOC367391), mRNA
          Length = 1698

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 155 cttgaatcagcagcaaggcagtacc 179
           ||||||||||||||| |||||||||
Sbjct: 484 cttgaatcagcagcagggcagtacc 460

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>gb|AF127139.1|AF127139 Homo sapiens Bcl-2-binding protein BIS (BIS) mRNA, complete cds
          Length = 2550

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 371  aagcatcattttcctttttag 391
            |||||||||||||||||||||
Sbjct: 2175 aagcatcattttcctttttag 2155

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>gb|AC005874.3|AC005874 citb_175_g_20, complete sequence
          Length = 177750

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 371   aagcatcattttcctttttag 391
             |||||||||||||||||||||
Sbjct: 64591 aagcatcattttcctttttag 64571

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>gb|BC006418.1| Homo sapiens BCL2-associated athanogene 3, mRNA (cDNA clone MGC:12641
            IMAGE:3635446), complete cds
          Length = 2586

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 371  aagcatcattttcctttttag 391
            |||||||||||||||||||||
Sbjct: 2181 aagcatcattttcctttttag 2161

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>gb|AF095193.2|AF095193 Homo sapiens BAG-family molecular chaperone regulator-3 mRNA,
            complete cds
          Length = 2534

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 371  aagcatcattttcctttttag 391
            |||||||||||||||||||||
Sbjct: 2203 aagcatcattttcctttttag 2183

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>gb|AF134471.2| Homo sapiens chromosome 10 clone citb_175_g_20_Contig902E_1999.01.14,
             complete sequence
          Length = 177747

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 371   aagcatcattttcctttttag 391
             |||||||||||||||||||||
Sbjct: 64588 aagcatcattttcctttttag 64568

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>gb|BC107786.1| Homo sapiens BCL2-associated athanogene 3, mRNA (cDNA clone
            MGC:104307 IMAGE:6655146), complete cds
          Length = 2395

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 371  aagcatcattttcctttttag 391
            |||||||||||||||||||||
Sbjct: 2007 aagcatcattttcctttttag 1987

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>gb|AC145507.3| Dasypus novemcinctus clone VMRC5-137J5, complete sequence
          Length = 109381

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   gcaaagttttcagaaagact 248
             ||||||||||||||||||||
Sbjct: 17944 gcaaagttttcagaaagact 17925

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>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 117     aaaagggggaaatggaataa 136
               ||||||||||||||||||||
Sbjct: 1031090 aaaagggggaaatggaataa 1031109

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>gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3, complete sequence
          Length = 127380

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   aaaagggggaaatggaataa 136
             ||||||||||||||||||||
Sbjct: 73091 aaaagggggaaatggaataa 73110

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>gb|AC103597.21| Mus musculus chromosome 18, clone RP23-435G4, complete sequence
          Length = 221083

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 525   catctctgaattttgtctct 544
             ||||||||||||||||||||
Sbjct: 86007 catctctgaattttgtctct 86026

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>ref|XM_744458.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g04190)
           partial mRNA
          Length = 2118

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 cgagtaagatctttgtggga 330
           ||||||||||||||||||||
Sbjct: 23  cgagtaagatctttgtggga 4

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>gb|AC126695.4| Mus musculus BAC clone RP23-313D2 from 18, complete sequence
          Length = 171427

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 525   catctctgaattttgtctct 544
             ||||||||||||||||||||
Sbjct: 13969 catctctgaattttgtctct 13950

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>gb|AC154498.2| Mus musculus BAC clone RP24-112F5 from chromosome 17, complete sequence
          Length = 153547

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    tctactactgagcctcatca 225
              ||||||||||||||||||||
Sbjct: 102072 tctactactgagcctcatca 102053

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>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete
             sequence
          Length = 164559

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 510   atcagcataataagacatctctga 533
             ||||||||||||||| ||||||||
Sbjct: 97819 atcagcataataagaaatctctga 97842

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>emb|AL445585.8| Human DNA sequence from clone RP11-54A3 on chromosome 13, complete
              sequence
          Length = 161310

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     taatcactacctccaccttc 89
              ||||||||||||||||||||
Sbjct: 155379 taatcactacctccaccttc 155360

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>emb|AL355805.20| Human DNA sequence from clone RP11-29L10 on chromosome Xq21.1-21.33
             Contains a ribosomal protein L6 (RPL6) pseudogene,
             complete sequence
          Length = 76507

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 471   accccttttagtatattttt 490
             ||||||||||||||||||||
Sbjct: 31090 accccttttagtatattttt 31109

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>emb|BX005109.23| Zebrafish DNA sequence from clone CH211-284K5 in linkage group 25,
             complete sequence
          Length = 186632

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   caaagttttcagaaagactg 249
             ||||||||||||||||||||
Sbjct: 65252 caaagttttcagaaagactg 65233

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>dbj|AP003603.1| Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, complete sequence
          Length = 101965

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   ccttctgaagcatcattttc 383
             ||||||||||||||||||||
Sbjct: 30782 ccttctgaagcatcattttc 30801

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>gb|AC122209.5| Mus musculus BAC clone RP23-96B17 from chromosome 17, complete sequence
          Length = 185883

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tctactactgagcctcatca 225
             ||||||||||||||||||||
Sbjct: 24418 tctactactgagcctcatca 24437

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>gb|AC157773.6| Mus musculus chromosome 8, clone RP24-161L20, complete sequence
          Length = 179186

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 626   ggaactttgttgctatggta 645
             ||||||||||||||||||||
Sbjct: 34626 ggaactttgttgctatggta 34607

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>gb|AC009741.5|AC009741 Drosophila melanogaster, chromosome 3R, region 87B-87B, BAC clone
             BACR44K17, complete sequence
          Length = 166863

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   tcttcatcatcagcataata 521
             ||||||||||||||||||||
Sbjct: 85311 tcttcatcatcagcataata 85330

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>gb|AC007724.4|AC007724 Drosophila melanogaster, chromosome 3R, region 87B-87B, BAC clone
              BACR30N15, complete sequence
          Length = 178199

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 502    tcttcatcatcagcataata 521
              ||||||||||||||||||||
Sbjct: 176823 tcttcatcatcagcataata 176842

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>gb|AC019127.10| Homo sapiens BAC clone RP11-558B7 from 2, complete sequence
          Length = 105118

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    cacaaccaccctgaaaggca 114
             ||||||||||||||||||||
Sbjct: 98159 cacaaccaccctgaaaggca 98140

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>ref|XM_233867.3| PREDICTED: Rattus norvegicus anaplastic lymphoma kinase (Alk), mRNA
          Length = 10686

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 605  tgaaattgggctcctgctct 624
            ||||||||||||||||||||
Sbjct: 2721 tgaaattgggctcctgctct 2740

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>gb|AC158127.3| Mus musculus chromosome 19, clone RP23-135N12, complete sequence
          Length = 217544

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 366    ttctgaagcatcattttccttttt 389
              |||||||||||||||||| |||||
Sbjct: 183920 ttctgaagcatcattttcattttt 183897

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>gb|AC111065.20| Mus musculus chromosome 19, clone RP23-315E4, complete sequence
          Length = 193977

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 366   ttctgaagcatcattttccttttt 389
             |||||||||||||||||| |||||
Sbjct: 95589 ttctgaagcatcattttcattttt 95612

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>gb|AE003695.2| Drosophila melanogaster chromosome 3R, section 33 of 118 of the complete
              sequence
          Length = 225655

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 502    tcttcatcatcagcataata 521
              ||||||||||||||||||||
Sbjct: 116606 tcttcatcatcagcataata 116625

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>gb|AC121131.14| Mus musculus chromosome 8, clone RP23-187D7, complete sequence
          Length = 188634

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 626    ggaactttgttgctatggta 645
              ||||||||||||||||||||
Sbjct: 117226 ggaactttgttgctatggta 117207

to top

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 213     ctgagcctcatcatcggcaa 232
               ||||||||||||||||||||
Sbjct: 3609734 ctgagcctcatcatcggcaa 3609715

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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 498     tgcatcttcatcatcagcat 517
               ||||||||||||||||||||
Sbjct: 2560927 tgcatcttcatcatcagcat 2560908

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>emb|AL935061.15| Mouse DNA sequence from clone RP23-186P20 on chromosome 2, complete
             sequence
          Length = 120330

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    accaccctgaaaggcacaaa 118
             ||||||||||||||||||||
Sbjct: 66549 accaccctgaaaggcacaaa 66568

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>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218,
             complete sequence
          Length = 113213

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 475   cttttagtatattttttgcggtttgcatcttcatcatcagcata 518
             ||||| ||||| ||||| || ||  |||||||||||||||||||
Sbjct: 79475 ctttttgtatactttttacgattcccatcttcatcatcagcata 79518

to top

>emb|AL773564.8| Zebrafish DNA sequence from clone CH211-204C7, complete sequence
          Length = 159763

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   caaagttttcagaaagactg 249
             ||||||||||||||||||||
Sbjct: 89064 caaagttttcagaaagactg 89045

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>emb|AL837522.8| Mouse DNA sequence from clone RP23-264L10 on chromosome 4, complete
             sequence
          Length = 128976

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   gaaagactgcgctgtgacaa 260
             ||||||||||||||||||||
Sbjct: 19983 gaaagactgcgctgtgacaa 20002

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>emb|AJ277952.1|SDO277952 Suberites domuncula snzerr gene for err-related and stress induced
            protein
          Length = 2804

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 513  agcataataagacatctctg 532
            ||||||||||||||||||||
Sbjct: 2576 agcataataagacatctctg 2595


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,515,062
Number of Sequences: 3902068
Number of extensions: 6515062
Number of successful extensions: 130668
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130345
Number of HSP's gapped (non-prelim): 316
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result