ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL365326.14| Mouse DNA sequence from clone RP23-381K21 on ch... 50 0.009
2gb|AC109296.16| Mus musculus chromosome 1, clone RP24-240J15, co... 44 0.57
3gb|AC121143.12| Mus musculus chromosome 1, clone RP24-177B16, co... 44 0.57
4ref|XM_961033.1| Plasmodium falciparum 3D7 hypothetical protein ... 44 0.57
5emb|CR382399.1| Plasmodium falciparum chromosome 6, complete seq... 44 0.57
6gb|AC145271.4| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
7gb|AC130730.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
8emb|CR352290.10| Zebrafish DNA sequence from clone DKEY-107G12 i... 42 2.2
9emb|BX664707.24| Zebrafish DNA sequence from clone DKEYP-74B6 in... 42 2.2
10gb|AC097487.2| Homo sapiens BAC clone RP11-217C7 from 4, complet... 42 2.2
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
12emb|BX088653.6| Zebrafish DNA sequence from clone CH211-202F3 in... 42 2.2
13gb|AC155249.2| Mus musculus BAC clone RP24-254A5 from chromosome... 40 8.9
14gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 8.9
15ref|XM_467319.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.9
16ref|XM_459828.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 8.9
17gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete... 40 8.9
18gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.9
19emb|Z48543.1|CEC18D1 Caenorhabditis elegans Cosmid C18D1, comple... 40 8.9
20gb|AC131675.4| Mus musculus BAC clone RP23-328L1 from chromosome... 40 8.9
21gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 40 8.9
22emb|AL365436.26| Human DNA sequence from clone RP11-74C1 on chro... 40 8.9
23emb|AL354807.6| Human DNA sequence from clone RP11-522F22 on chr... 40 8.9
24gb|AC091617.2| Rattus norvegicus strain Brown Norway clone RP31-... 40 8.9
25gb|AC091514.2| Rattus norvegicus strain Brown Norway clone RP31-... 40 8.9
26emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 40 8.9
27emb|BX571701.10| Zebrafish DNA sequence from clone CH211-233M11 ... 40 8.9
28emb|AL928548.5| Mouse DNA sequence from clone RP23-397C22 on chr... 40 8.9
29emb|AL844601.4| Mouse DNA sequence from clone RP23-245J22 on chr... 40 8.9
30gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 gen... 40 8.9
31gb|AC083806.16| Homo sapiens 12q BAC RP11-240G22 (Roswell Park C... 40 8.9
32ref|NM_020770.1| Homo sapiens cingulin (CGN), mRNA 40 8.9
33gb|AC027131.6| Homo sapiens chromosome 16 clone RP11-317I8, comp... 40 8.9
34emb|BX510360.8| Zebrafish DNA sequence from clone DKEY-265A7 in ... 40 8.9
35dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
36dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
37gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, ... 40 8.9
38gb|AC009084.9| Homo sapiens chromosome 16 clone RP11-361L15, com... 40 8.9
39gb|AC154290.1| Mus musculus BAC clone RP23-443K24 from chromosom... 40 8.9
40gb|AF263462.1|AF263462 Homo sapiens cingulin mRNA, complete cds 40 8.9
41dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
42dbj|AP003994.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
43dbj|AK108599.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.9
44gb|AC154643.2| Mus musculus BAC clone RP23-277M12 from 13, compl... 40 8.9
45gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34... 40 8.9
46gb|AC109198.9| Mus musculus chromosome 15, clone RP23-31G10, com... 40 8.9
47gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, co... 40 8.9
48gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.9
49gb|AY998955.1| Halcyon leucocephala voucher LSUMNS B39531 tRNA-G... 40 8.9
50gb|AC155259.1| Mus musculus BAC clone RP24-70C15 from 9, complet... 40 8.9
51emb|CT009609.1| Desulfococcus multivorans vrl island 40 8.9
52dbj|AB037740.1| Homo sapiens mRNA for KIAA1319 protein, partial cds 40 8.9
53dbj|AB074005.1| Oryza sativa (japonica cultivar-group) mitochond... 40 8.9
54dbj|AB074004.1| Oryza sativa (japonica cultivar-group) mitochond... 40 8.9 
>emb|AL365326.14| Mouse DNA sequence from clone RP23-381K21 on chromosome 1, complete
             sequence
          Length = 189860

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 312   ttcatacttgctatggaactcaaaa 336
             |||||||||||||||||||||||||
Sbjct: 50362 ttcatacttgctatggaactcaaaa 50338
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>gb|AC109296.16| Mus musculus chromosome 1, clone RP24-240J15, complete sequence
          Length = 161257

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 82     aaaaacatgtcgagccaagcactcag 107
              |||||||||| |||||||||||||||
Sbjct: 154520 aaaaacatgtggagccaagcactcag 154495
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>gb|AC121143.12| Mus musculus chromosome 1, clone RP24-177B16, complete sequence
          Length = 176008

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 82    aaaaacatgtcgagccaagcactcag 107
             |||||||||| |||||||||||||||
Sbjct: 40880 aaaaacatgtggagccaagcactcag 40855
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>ref|XM_961033.1| Plasmodium falciparum 3D7 hypothetical protein (PFF0675c) partial
            mRNA
          Length = 6462

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 183  ccatcatccttctcctcacaaa 204
            ||||||||||||||||||||||
Sbjct: 3524 ccatcatccttctcctcacaaa 3503
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>emb|CR382399.1| Plasmodium falciparum chromosome 6, complete sequence; segment 2/5
          Length = 348174

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 183    ccatcatccttctcctcacaaa 204
              ||||||||||||||||||||||
Sbjct: 233000 ccatcatccttctcctcacaaa 233021
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>gb|AC145271.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1140B01,
              complete sequence
          Length = 135184

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 593    tggacgcgtccgtctcctcctccggcgaaggca 625
              ||||| ||||| |||||||||||||||| ||||
Sbjct: 129742 tggactcgtccttctcctcctccggcgagggca 129774
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>gb|AC130730.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0681D04,
             complete sequence
          Length = 163670

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 593   tggacgcgtccgtctcctcctccggcgaaggca 625
             ||||| ||||| |||||||||||||||| ||||
Sbjct: 20496 tggactcgtccttctcctcctccggcgagggca 20528
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>emb|CR352290.10| Zebrafish DNA sequence from clone DKEY-107G12 in linkage group 18,
              complete sequence
          Length = 137797

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 250    acagatagacagacagatcga 270
              |||||||||||||||||||||
Sbjct: 122220 acagatagacagacagatcga 122240



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 250    acagatagacagacagatcga 270
              |||||||||||||||||||||
Sbjct: 121956 acagatagacagacagatcga 121976
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>emb|BX664707.24| Zebrafish DNA sequence from clone DKEYP-74B6 in linkage group 7,
             complete sequence
          Length = 210220

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 250   acagatagacagacagatcga 270
             |||||||||||||||||||||
Sbjct: 27875 acagatagacagacagatcga 27855



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 250   acagatagacagacagatcga 270
             |||||||||||||||||||||
Sbjct: 27191 acagatagacagacagatcga 27171



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 250   acagatagacagacagatcga 270
             |||||||||||||||||||||
Sbjct: 26459 acagatagacagacagatcga 26439
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>gb|AC097487.2| Homo sapiens BAC clone RP11-217C7 from 4, complete sequence
          Length = 165504

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 182    cccatcatccttctcctcaca 202
              |||||||||||||||||||||
Sbjct: 136833 cccatcatccttctcctcaca 136853
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 593     tggacgcgtccgtctcctcctccggcgaaggca 625
               ||||| ||||| |||||||||||||||| ||||
Sbjct: 5596532 tggactcgtccttctcctcctccggcgagggca 5596564



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 466      gcgatggcctcgtcgtccac 485
                ||||||||||||||||||||
Sbjct: 23369865 gcgatggcctcgtcgtccac 23369884
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>emb|BX088653.6| Zebrafish DNA sequence from clone CH211-202F3 in linkage group 23,
              complete sequence
          Length = 223839

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 250    acagatagacagacagatcga 270
              |||||||||||||||||||||
Sbjct: 100053 acagatagacagacagatcga 100033
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>gb|AC155249.2| Mus musculus BAC clone RP24-254A5 from chromosome 9, complete sequence
          Length = 191932

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 596    acgcgtccgtctcctcctccggcg 619
              |||||| |||||||||||||||||
Sbjct: 178992 acgcgtgcgtctcctcctccggcg 178969
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 607     tcctcctccggcgaaggcagcaag 630
               ||||||||||| ||||||||||||
Sbjct: 2512298 tcctcctccggtgaaggcagcaag 2512275
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>ref|XM_467319.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1038

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 590 ccttggacgcgtccgtctcctcct 613
           ||||||||||| ||||||||||||
Sbjct: 196 ccttggacgcggccgtctcctcct 173
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>ref|XM_459828.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E12562g)
           partial mRNA
          Length = 1257

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 384 ttggtcggaactggagcaggtgag 407
           |||||||||||| |||||||||||
Sbjct: 998 ttggtcggaacttgagcaggtgag 975
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>gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete sequence
          Length = 164461

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    tagataagcacatcaccaca 252
              ||||||||||||||||||||
Sbjct: 114352 tagataagcacatcaccaca 114371
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>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0018K15, complete sequence
          Length = 168519

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 466   gcgatggcctcgtcgtccac 485
             ||||||||||||||||||||
Sbjct: 55401 gcgatggcctcgtcgtccac 55420
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>emb|Z48543.1|CEC18D1 Caenorhabditis elegans Cosmid C18D1, complete sequence
          Length = 42310

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   ttttgctatggattcataat 374
             ||||||||||||||||||||
Sbjct: 19595 ttttgctatggattcataat 19614
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>gb|AC131675.4| Mus musculus BAC clone RP23-328L1 from chromosome 18, complete sequence
          Length = 191085

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   attacagaggagtgttcatc 223
             ||||||||||||||||||||
Sbjct: 48414 attacagaggagtgttcatc 48395
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 427     cgcgcttgctcgctgtatgc 446
               ||||||||||||||||||||
Sbjct: 2522653 cgcgcttgctcgctgtatgc 2522672
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>emb|AL365436.26| Human DNA sequence from clone RP11-74C1 on chromosome 1 Contains the
             CGN gene for cingulin, the TUFT1 gene for tuftelin 1, a
             ribosomal protein S10 (RPS10) pseudogene and two CpG
             isalnds, complete sequence
          Length = 91830

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   cgtcgtccacctcgacgtag 495
             ||||||||||||||||||||
Sbjct: 11748 cgtcgtccacctcgacgtag 11729
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>emb|AL354807.6| Human DNA sequence from clone RP11-522F22 on chromosome 13 Contains a
              DnaJ (Hsp40) homolog, subfamily A, member 1 (DNAJA1)
              pseudogene, complete sequence
          Length = 157135

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    aaaacttggtgaattattaa 173
              ||||||||||||||||||||
Sbjct: 143205 aaaacttggtgaattattaa 143224
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>gb|AC091617.2| Rattus norvegicus strain Brown Norway clone RP31-371K3, complete
             sequence
          Length = 150494

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 241   cacatcaccacagatagacagaca 264
             |||||||||||||| |||||||||
Sbjct: 17489 cacatcaccacagacagacagaca 17466
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>gb|AC091514.2| Rattus norvegicus strain Brown Norway clone RP31-223K12, complete
              sequence
          Length = 148370

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 241    cacatcaccacagatagacagaca 264
              |||||||||||||| |||||||||
Sbjct: 131774 cacatcaccacagacagacagaca 131751
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>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
              hansenii
          Length = 2037969

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 384    ttggtcggaactggagcaggtgag 407
              |||||||||||| |||||||||||
Sbjct: 932879 ttggtcggaacttgagcaggtgag 932902
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>emb|BX571701.10| Zebrafish DNA sequence from clone CH211-233M11 in linkage group 13,
             complete sequence
          Length = 154641

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   accacagatagacagacaga 266
             ||||||||||||||||||||
Sbjct: 29867 accacagatagacagacaga 29848
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>emb|AL928548.5| Mouse DNA sequence from clone RP23-397C22 on chromosome 4 Contains a
             novel pseudogene, complete sequence
          Length = 76031

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   accacagatagacagacaga 266
             ||||||||||||||||||||
Sbjct: 74470 accacagatagacagacaga 74489
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>emb|AL844601.4| Mouse DNA sequence from clone RP23-245J22 on chromosome 4, complete
           sequence
          Length = 166294

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 accacagatagacagacaga 266
           ||||||||||||||||||||
Sbjct: 439 accacagatagacagacaga 458
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>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
              sequence
          Length = 139614

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 597    cgcgtccgtctcctcctccg 616
              ||||||||||||||||||||
Sbjct: 119041 cgcgtccgtctcctcctccg 119060
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>gb|AC083806.16| Homo sapiens 12q BAC RP11-240G22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164461

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 630    gctgggatttttgctcctca 649
              ||||||||||||||||||||
Sbjct: 155186 gctgggatttttgctcctca 155167
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>ref|NM_020770.1| Homo sapiens cingulin (CGN), mRNA
          Length = 5142

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 476 cgtcgtccacctcgacgtag 495
           ||||||||||||||||||||
Sbjct: 273 cgtcgtccacctcgacgtag 254
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>gb|AC027131.6| Homo sapiens chromosome 16 clone RP11-317I8, complete sequence
          Length = 206102

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 494    agcccttgtcatggagctgg 513
              ||||||||||||||||||||
Sbjct: 117246 agcccttgtcatggagctgg 117265
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>emb|BX510360.8| Zebrafish DNA sequence from clone DKEY-265A7 in linkage group 2, complete
              sequence
          Length = 213323

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     aaatttacaatgcagtgtca 67
              ||||||||||||||||||||
Sbjct: 101480 aaatttacaatgcagtgtca 101461
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 597      cgcgtccgtctcctcctccg 616
                ||||||||||||||||||||
Sbjct: 18232129 cgcgtccgtctcctcctccg 18232110
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 590      ccttggacgcgtccgtctcctcct 613
                ||||||||||| ||||||||||||
Sbjct: 28832343 ccttggacgcggccgtctcctcct 28832366
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>gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone
             BACR07D23, complete sequence
          Length = 176610

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   tagataagcacatcaccaca 252
             ||||||||||||||||||||
Sbjct: 62265 tagataagcacatcaccaca 62246
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>gb|AC009084.9| Homo sapiens chromosome 16 clone RP11-361L15, complete sequence
          Length = 183864

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 494   agcccttgtcatggagctgg 513
             ||||||||||||||||||||
Sbjct: 33487 agcccttgtcatggagctgg 33506
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>gb|AC154290.1| Mus musculus BAC clone RP23-443K24 from chromosome 13, complete
             sequence
          Length = 193345

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   cacagatagacagacagatc 268
             ||||||||||||||||||||
Sbjct: 91398 cacagatagacagacagatc 91379
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>gb|AF263462.1|AF263462 Homo sapiens cingulin mRNA, complete cds
          Length = 5142

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 476 cgtcgtccacctcgacgtag 495
           ||||||||||||||||||||
Sbjct: 273 cgtcgtccacctcgacgtag 254
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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0459B01
          Length = 163087

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 590    ccttggacgcgtccgtctcctcct 613
              ||||||||||| ||||||||||||
Sbjct: 148916 ccttggacgcggccgtctcctcct 148939
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>dbj|AP003994.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1111_E07
          Length = 123613

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 590   ccttggacgcgtccgtctcctcct 613
             ||||||||||| ||||||||||||
Sbjct: 25035 ccttggacgcggccgtctcctcct 25058
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>dbj|AK108599.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E06, full
           insert sequence
          Length = 1438

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 597 cgcgtccgtctcctcctccg 616
           ||||||||||||||||||||
Sbjct: 46  cgcgtccgtctcctcctccg 27
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>gb|AC154643.2| Mus musculus BAC clone RP23-277M12 from 13, complete sequence
          Length = 182420

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    accacagatagacagacaga 266
              ||||||||||||||||||||
Sbjct: 162534 accacagatagacagacaga 162515
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>gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34 of 83 of the
            complete sequence
          Length = 271507

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  tagataagcacatcaccaca 252
            ||||||||||||||||||||
Sbjct: 2460 tagataagcacatcaccaca 2441
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>gb|AC109198.9| Mus musculus chromosome 15, clone RP23-31G10, complete sequence
          Length = 207069

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 250   acagatagacagacagatcgaagt 273
             |||||||||||||||||| |||||
Sbjct: 90002 acagatagacagacagatagaagt 90025
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>gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, complete sequence
          Length = 190133

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 247  accacagatagacagacaga 266
            ||||||||||||||||||||
Sbjct: 3791 accacagatagacagacaga 3772
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 597      cgcgtccgtctcctcctccg 616
                ||||||||||||||||||||
Sbjct: 18241382 cgcgtccgtctcctcctccg 18241363
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>gb|AY998955.1| Halcyon leucocephala voucher LSUMNS B39531 tRNA-Gly gene, partial
           sequence; NADH dehydrogenase subunit 3 (ND3) gene,
           complete cds; and tRNA-Arg gene, partial sequence;
           mitochondrial
          Length = 393

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 ccatcatccttctcctcaca 202
           ||||||||||||||||||||
Sbjct: 296 ccatcatccttctcctcaca 315
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>gb|AC155259.1| Mus musculus BAC clone RP24-70C15 from 9, complete sequence
          Length = 222729

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 596   acgcgtccgtctcctcctccggcg 619
             |||||| |||||||||||||||||
Sbjct: 41068 acgcgtgcgtctcctcctccggcg 41045
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>emb|CT009609.1| Desulfococcus multivorans vrl island
          Length = 89210

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   cggaactggagcaggtgagg 408
             ||||||||||||||||||||
Sbjct: 15213 cggaactggagcaggtgagg 15194
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>dbj|AB037740.1| Homo sapiens mRNA for KIAA1319 protein, partial cds
          Length = 5073

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 476 cgtcgtccacctcgacgtag 495
           ||||||||||||||||||||
Sbjct: 239 cgtcgtccacctcgacgtag 220
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>dbj|AB074005.1| Oryza sativa (japonica cultivar-group) mitochondrial AOX1c mRNA for
           alternative oxidase 1c, complete cds
          Length = 1088

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 590 ccttggacgcgtccgtctcctcct 613
           ||||||||||| ||||||||||||
Sbjct: 229 ccttggacgcggccgtctcctcct 206
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>dbj|AB074004.1| Oryza sativa (japonica cultivar-group) mitochondrial AOX1c gene for
           alternative oxidase 1c, complete cds
          Length = 2674

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 590 ccttggacgcgtccgtctcctcct 613
           ||||||||||| ||||||||||||
Sbjct: 754 ccttggacgcggccgtctcctcct 731


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,472,944
Number of Sequences: 3902068
Number of extensions: 5472944
Number of successful extensions: 128351
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127914
Number of HSP's gapped (non-prelim): 437
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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