ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13n03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
2dbj|AK061862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
3gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome... 94 7e-16
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 94 7e-16
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 94 7e-16
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 90 1e-14
8emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb... 90 1e-14
9gb|AY104784.1| Zea mays PCO129009 mRNA sequence 76 2e-10
10gb|BT019120.1| Zea mays clone Contig732.F mRNA sequence 72 3e-09
11gb|AY109148.1| Zea mays PCO129008 mRNA sequence 72 3e-09
12emb|BX294167.5| Zebrafish DNA sequence from clone CH211-244O18 i... 44 0.60
13gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome... 42 2.4
14gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N... 42 2.4
15gb|AC104519.2| Genomic sequence for Mus musculus, clone RP23-8L6... 42 2.4
16gb|AF327412.1| Mus musculus H19 gene, upstream enhancer sequence 42 2.4
17gb|AC093796.3| Homo sapiens BAC clone RP11-301H24 from 4, comple... 42 2.4
18emb|CT027994.2| M.spretus DNA sequence from clone XX-CH35_17P24 ... 42 2.4
19gb|AC013548.13| Mus musculus chromosome 7, clone RP23-209O22, co... 42 2.4
20dbj|AP003182.2| Mus musculus genomic DNA, chromosome 7 clone:B18... 42 2.4
21gb|AC115930.10| Mus musculus chromosome 3, clone RP24-534H10, co... 40 9.3
22gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome ... 40 9.3
23gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, co... 40 9.3
24gb|AF445654.1| Uncultured cyanobacterium clone SM1B04 16S riboso... 40 9.3
25gb|AC125095.3| Mus musculus BAC clone RP24-179H12 from chromosom... 40 9.3
26gb|AC123061.4| Mus musculus BAC clone RP23-216H22 from 14, compl... 40 9.3
27emb|AL592504.6| Human DNA sequence from clone RP11-320J16 on chr... 40 9.3
28emb|AL049569.13|HSDJ37C10 Human DNA sequence from clone RP1-37C1... 40 9.3
29gb|AC164662.6| Mus musculus 10 BAC RP24-279D11 (Roswell Park Can... 40 9.3
30dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
31gb|AC068904.44| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 9.3
32gb|AC124982.13| Mus musculus chromosome 3, clone RP24-173F6, com... 40 9.3
33dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
34gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, comple... 40 9.3
35gb|CP000170.1| Drosophila melanogaster genomic scaffold 21100002... 40 9.3
36emb|CT476806.2| Pan troglodytes chromosome X BAC RP43-032D14, co... 40 9.3
37gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 9.3
38gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosom... 40 9.3 
>dbj|AK103742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138L11, full
            insert sequence
          Length = 1354

 Score =  174 bits (88), Expect = 2e-40
 Identities = 268/328 (81%)
 Strand = Plus / Minus

                                                                        
Query: 244  ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 303
            ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1027 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 968

                                                                        
Query: 304  agatgataagcagcactacacccacaaaaactccttccaggagagtagattttaattggc 363
            ||||||| ||||||||||  || |||||   ||||||||| ||||| ||||||| |  ||
Sbjct: 967  agatgatcagcagcactattccaacaaagcttccttccagcagagttgattttactaagc 908

                                                                        
Query: 364  actctccatcgcatttctctaggacaggtttagttgcgttggtcttctctgcaagatacc 423
            |||| || || |||||  |  || |||||||||| |  |||||||||||||| || ||||
Sbjct: 907  actccccgtcacattttccacggccaggtttagtagtattggtcttctctgcgaggtacc 848

                                                                        
Query: 424  tggctaatggcaggtccgaaggattctccagcaaaccatacggctgagaagcgtaaagaa 483
            || ||||||| ||||  ||||| ||||| ||||||||| | ||||||||||| |||||||
Sbjct: 847  tgcctaatggtaggtttgaagggttctctagcaaaccaaagggctgagaagcataaagaa 788

                                                                        
Query: 484  ctgtgtatttagccccagacttgtcaagaacagaaaccagatccaaaagcaactgccctt 543
              || |||||||| |||||||| |  || | || |||||| ||  ||||||||| |||||
Sbjct: 787  tcgtatatttagctccagacttcttcagcagagtaaccagctcagaaagcaactcccctt 728

                                        
Query: 544  ctgattttgcattatccttgaaaccacc 571
            |||||||||  |||||||||||||||||
Sbjct: 727  ctgattttgtgttatccttgaaaccacc 700
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>dbj|AK061862.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G12, full
            insert sequence
          Length = 1371

 Score =  159 bits (80), Expect = 1e-35
 Identities = 266/328 (81%)
 Strand = Plus / Minus

                                                                        
Query: 244  ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 303
            ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1042 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 983

                                                                        
Query: 304  agatgataagcagcactacacccacaaaaactccttccaggagagtagattttaattggc 363
            ||||||| ||||||||||  || |||||   |||||| || ||||| ||||||| |  ||
Sbjct: 982  agatgattagcagcactattccaacaaagcttccttctagcagagttgattttactaagc 923

                                                                        
Query: 364  actctccatcgcatttctctaggacaggtttagttgcgttggtcttctctgcaagatacc 423
            |||| ||||| |||||  |  || | |||||||| |  || ||||||||||| || ||||
Sbjct: 922  actccccatcacattttccacggccgggtttagtagtattagtcttctctgcgaggtacc 863

                                                                        
Query: 424  tggctaatggcaggtccgaaggattctccagcaaaccatacggctgagaagcgtaaagaa 483
            || |||| |||||||  |||||  |||| ||||||||||| ||||||||||| |||||||
Sbjct: 862  tgcctaacggcaggtttgaagggctctctagcaaaccatagggctgagaagcataaagaa 803

                                                                        
Query: 484  ctgtgtatttagccccagacttgtcaagaacagaaaccagatccaaaagcaactgccctt 543
             ||| |||||||| |||||||| |  || | || |||||| ||  |||| |||| |||||
Sbjct: 802  ttgtatatttagctccagacttcttcagcagagtaaccagctcagaaagtaactcccctt 743

                                        
Query: 544  ctgattttgcattatccttgaaaccacc 571
            |||||||||  |||||||||||||||||
Sbjct: 742  ctgattttgtgttatccttgaaaccacc 715
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>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15,
              complete sequence
          Length = 147941

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 140/171 (81%)
 Strand = Plus / Minus

                                                                          
Query: 335    tccttccaggagagtagattttaattggcactctccatcgcatttctctaggacaggttt 394
              ||||||||| ||||| ||||||| |  |||||| || || |||||  |  || |||||||
Sbjct: 114190 tccttccagcagagttgattttactaagcactccccgtcacattttccacggccaggttt 114131

                                                                          
Query: 395    agttgcgttggtcttctctgcaagatacctggctaatggcaggtccgaaggattctccag 454
              ||| |  |||||||||||||| || |||||| ||||||| ||||  ||||| ||||| ||
Sbjct: 114130 agtagtattggtcttctctgcgaggtacctgcctaatggtaggtttgaagggttctctag 114071

                                                                 
Query: 455    caaaccatacggctgagaagcgtaaagaactgtgtatttagccccagactt 505
              ||||||| | ||||||||||| |||||||  || |||||||| ||||||||
Sbjct: 114070 caaaccaaagggctgagaagcataaagaatcgtatatttagctccagactt 114020



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                          
Query: 244    ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 303
              ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 114514 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 114455

                                
Query: 304    agatgataagcagcacta 321
              ||||||| ||||||||||
Sbjct: 114454 agatgatcagcagcacta 114437



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 540    ccttctgattttgcattatccttgaaaccacc 571
              |||||||||||||  |||||||||||||||||
Sbjct: 113906 ccttctgattttgtgttatccttgaaaccacc 113875
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 140/171 (81%)
 Strand = Plus / Plus

                                                                           
Query: 335     tccttccaggagagtagattttaattggcactctccatcgcatttctctaggacaggttt 394
               ||||||||| ||||| ||||||| |  |||||| || || |||||  |  || |||||||
Sbjct: 1276425 tccttccagcagagttgattttactaagcactccccgtcacattttccacggccaggttt 1276484

                                                                           
Query: 395     agttgcgttggtcttctctgcaagatacctggctaatggcaggtccgaaggattctccag 454
               ||| |  |||||||||||||| || |||||| ||||||| ||||  ||||| ||||| ||
Sbjct: 1276485 agtagtattggtcttctctgcgaggtacctgcctaatggtaggtttgaagggttctctag 1276544

                                                                  
Query: 455     caaaccatacggctgagaagcgtaaagaactgtgtatttagccccagactt 505
               ||||||| | ||||||||||| |||||||  || |||||||| ||||||||
Sbjct: 1276545 caaaccaaagggctgagaagcataaagaatcgtatatttagctccagactt 1276595



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 244     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 303
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1276101 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1276160

                                 
Query: 304     agatgataagcagcacta 321
               ||||||| ||||||||||
Sbjct: 1276161 agatgatcagcagcacta 1276178



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 540     ccttctgattttgcattatccttgaaaccacc 571
               |||||||||||||  |||||||||||||||||
Sbjct: 1276709 ccttctgattttgtgttatccttgaaaccacc 1276740
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 140/171 (81%)
 Strand = Plus / Plus

                                                                           
Query: 335     tccttccaggagagtagattttaattggcactctccatcgcatttctctaggacaggttt 394
               ||||||||| ||||| ||||||| |  |||||| || || |||||  |  || |||||||
Sbjct: 1274146 tccttccagcagagttgattttactaagcactccccgtcacattttccacggccaggttt 1274205

                                                                           
Query: 395     agttgcgttggtcttctctgcaagatacctggctaatggcaggtccgaaggattctccag 454
               ||| |  |||||||||||||| || |||||| ||||||| ||||  ||||| ||||| ||
Sbjct: 1274206 agtagtattggtcttctctgcgaggtacctgcctaatggtaggtttgaagggttctctag 1274265

                                                                  
Query: 455     caaaccatacggctgagaagcgtaaagaactgtgtatttagccccagactt 505
               ||||||| | ||||||||||| |||||||  || |||||||| ||||||||
Sbjct: 1274266 caaaccaaagggctgagaagcataaagaatcgtatatttagctccagactt 1274316



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 244     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 303
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1273822 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1273881

                                 
Query: 304     agatgataagcagcacta 321
               ||||||| ||||||||||
Sbjct: 1273882 agatgatcagcagcacta 1273899



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 540     ccttctgattttgcattatccttgaaaccacc 571
               |||||||||||||  |||||||||||||||||
Sbjct: 1274430 ccttctgattttgtgttatccttgaaaccacc 1274461
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                           
Query: 405     gtcttctctgcaagatacctggctaatggcaggtccgaaggattctccagcaaaccatac 464
               ||||||||||| || |||||| |||| |||||||  |||||  |||| ||||||||||| 
Sbjct: 1151325 gtcttctctgcgaggtacctgcctaacggcaggtttgaagggctctctagcaaaccatag 1151384

                                                        
Query: 465     ggctgagaagcgtaaagaactgtgtatttagccccagactt 505
               ||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct: 1151385 ggctgagaagcataaagaattgtatatttagctccagactt 1151425



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 244     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 303
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1150960 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1151019

                                 
Query: 304     agatgataagcagcacta 321
               ||||||| ||||||||||
Sbjct: 1151020 agatgattagcagcacta 1151037



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 540     ccttctgattttgcattatccttgaaaccacc 571
               |||||||||||||  |||||||||||||||||
Sbjct: 1151540 ccttctgattttgtgttatccttgaaaccacc 1151571
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                           
Query: 405     gtcttctctgcaagatacctggctaatggcaggtccgaaggattctccagcaaaccatac 464
               ||||||||||| || |||||| |||| |||||||  |||||  |||| ||||||||||| 
Sbjct: 1151325 gtcttctctgcgaggtacctgcctaacggcaggtttgaagggctctctagcaaaccatag 1151384

                                                        
Query: 465     ggctgagaagcgtaaagaactgtgtatttagccccagactt 505
               ||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct: 1151385 ggctgagaagcataaagaattgtatatttagctccagactt 1151425



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 244     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 303
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1150960 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1151019

                                 
Query: 304     agatgataagcagcacta 321
               ||||||| ||||||||||
Sbjct: 1151020 agatgattagcagcacta 1151037



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 540     ccttctgattttgcattatccttgaaaccacc 571
               |||||||||||||  |||||||||||||||||
Sbjct: 1151540 ccttctgattttgtgttatccttgaaaccacc 1151571
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>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 126974

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                         
Query: 405   gtcttctctgcaagatacctggctaatggcaggtccgaaggattctccagcaaaccatac 464
             ||||||||||| || |||||| |||| |||||||  |||||  |||| ||||||||||| 
Sbjct: 90308 gtcttctctgcgaggtacctgcctaacggcaggtttgaagggctctctagcaaaccatag 90367

                                                      
Query: 465   ggctgagaagcgtaaagaactgtgtatttagccccagactt 505
             ||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct: 90368 ggctgagaagcataaagaattgtatatttagctccagactt 90408



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                         
Query: 244   ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 303
             ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 89943 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 90002

                               
Query: 304   agatgataagcagcacta 321
             ||||||| ||||||||||
Sbjct: 90003 agatgattagcagcacta 90020



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 540   ccttctgattttgcattatccttgaaaccacc 571
             |||||||||||||  |||||||||||||||||
Sbjct: 90523 ccttctgattttgtgttatccttgaaaccacc 90554
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>gb|AY104784.1| Zea mays PCO129009 mRNA sequence
          Length = 1520

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                        
Query: 240  tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 299
            ||||||||||| |||||||| || || |||||||| |||||||||||   ||||||||||
Sbjct: 1083 tcctggggagcttcaaacctcgagggagtatcgatgcccatcatgcacatgagtcctgat 1024

                                  
Query: 300  atcaagatgataagcagcacta 321
            |||| |||||| || |||||||
Sbjct: 1023 atcaggatgatgagaagcacta 1002
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>gb|BT019120.1| Zea mays clone Contig732.F mRNA sequence
          Length = 436

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 114/140 (81%)
 Strand = Plus / Minus

                                                                       
Query: 240 tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 299
           ||||||||||| |||||| | || || |||||||| |||||||| ||   ||| ||||||
Sbjct: 148 tcctggggagcttcaaacttggagggagtatcgattcccatcatacacatgagccctgat 89

                                                                       
Query: 300 atcaagatgataagcagcactacacccacaaaaactccttccaggagagtagattttaat 359
           |||||||||||||| |||||||  || |||||   |||||| || ||||| ||||| | |
Sbjct: 88  atcaagatgataaggagcactattccgacaaaggttccttcaagaagagttgatttgact 29

                               
Query: 360 tggcactctccatcgcattt 379
            |||||||||| || |||||
Sbjct: 28  aggcactctccgtcacattt 9
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>gb|AY109148.1| Zea mays PCO129008 mRNA sequence
          Length = 1389

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 114/140 (81%)
 Strand = Plus / Minus

                                                                        
Query: 240  tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 299
            ||||||||||| |||||| | || || |||||||| |||||||| ||   ||| ||||||
Sbjct: 1084 tcctggggagcttcaaacttggagggagtatcgattcccatcatacacatgagccctgat 1025

                                                                        
Query: 300  atcaagatgataagcagcactacacccacaaaaactccttccaggagagtagattttaat 359
            |||||||||||||| |||||||  || |||||   |||||| || ||||| ||||| | |
Sbjct: 1024 atcaagatgataaggagcactattccgacaaaggttccttcaagaagagttgatttgact 965

                                
Query: 360  tggcactctccatcgcattt 379
             |||||||||| || |||||
Sbjct: 964  aggcactctccgtcacattt 945
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>emb|BX294167.5| Zebrafish DNA sequence from clone CH211-244O18 in linkage group 5,
             complete sequence
          Length = 191302

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 656   cagatgtttcttcatactttca 677
             ||||||||||||||||||||||
Sbjct: 26491 cagatgtttcttcatactttca 26512
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>gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome 17, complete sequence
          Length = 184952

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 311   aagcagcactacacccacaaa 331
             |||||||||||||||||||||
Sbjct: 78885 aagcagcactacacccacaaa 78905
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>gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N1, from chromosome 17,
              complete sequence
          Length = 254336

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 311    aagcagcactacacccacaaa 331
              |||||||||||||||||||||
Sbjct: 248536 aagcagcactacacccacaaa 248516
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>gb|AC104519.2| Genomic sequence for Mus musculus, clone RP23-8L6, complete sequence
          Length = 197070

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 311   aagcagcactacacccacaaa 331
             |||||||||||||||||||||
Sbjct: 16848 aagcagcactacacccacaaa 16828
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>gb|AF327412.1| Mus musculus H19 gene, upstream enhancer sequence
          Length = 7708

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 143  ggcacctttcaagaggaagct 163
            |||||||||||||||||||||
Sbjct: 4759 ggcacctttcaagaggaagct 4779
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>gb|AC093796.3| Homo sapiens BAC clone RP11-301H24 from 4, complete sequence
          Length = 165929

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 401   gttggtcttctctgcaagata 421
             |||||||||||||||||||||
Sbjct: 99564 gttggtcttctctgcaagata 99584
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>emb|CT027994.2| M.spretus DNA sequence from clone XX-CH35_17P24 on chromosome 7, complete
              sequence
          Length = 169471

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 143    ggcacctttcaagaggaagct 163
              |||||||||||||||||||||
Sbjct: 127172 ggcacctttcaagaggaagct 127192
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>gb|AC013548.13| Mus musculus chromosome 7, clone RP23-209O22, complete sequence
          Length = 220084

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 143    ggcacctttcaagaggaagct 163
              |||||||||||||||||||||
Sbjct: 130358 ggcacctttcaagaggaagct 130378
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>dbj|AP003182.2| Mus musculus genomic DNA, chromosome 7 clone:B189M11, complete sequences
          Length = 105288

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 143    ggcacctttcaagaggaagct 163
              |||||||||||||||||||||
Sbjct: 100473 ggcacctttcaagaggaagct 100493
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>gb|AC115930.10| Mus musculus chromosome 3, clone RP24-534H10, complete sequence
          Length = 158041

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 510    agaacagaaaccagatccaa 529
              ||||||||||||||||||||
Sbjct: 145781 agaacagaaaccagatccaa 145762
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>gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome 12, complete sequence
          Length = 226392

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    aaaatacacaagcaaggcac 147
              ||||||||||||||||||||
Sbjct: 137595 aaaatacacaagcaaggcac 137614
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>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence
          Length = 220191

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   caagaggaagctatctatat 171
             ||||||||||||||||||||
Sbjct: 94685 caagaggaagctatctatat 94666
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>gb|AF445654.1| Uncultured cyanobacterium clone SM1B04 16S ribosomal RNA gene,
           partial sequence
          Length = 1445

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 491 tttagccccagacttgtcaa 510
           ||||||||||||||||||||
Sbjct: 544 tttagccccagacttgtcaa 525
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>gb|AC125095.3| Mus musculus BAC clone RP24-179H12 from chromosome 14, complete
            sequence
          Length = 147123

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 648  tccatgttcagatgtttctt 667
            ||||||||||||||||||||
Sbjct: 2608 tccatgttcagatgtttctt 2589
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>gb|AC123061.4| Mus musculus BAC clone RP23-216H22 from 14, complete sequence
          Length = 193093

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 648   tccatgttcagatgtttctt 667
             ||||||||||||||||||||
Sbjct: 16409 tccatgttcagatgtttctt 16428
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>emb|AL592504.6| Human DNA sequence from clone RP11-320J16 on chromosome X Contains part
             of a novel gene, complete sequence
          Length = 173828

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 657   agatgtttcttcatactttc 676
             ||||||||||||||||||||
Sbjct: 91168 agatgtttcttcatactttc 91149
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>emb|AL049569.13|HSDJ37C10 Human DNA sequence from clone RP1-37C10 on chromosome 1p35.2-35.21
              Contains the 3' end of the CROCC gene for ciliary rootlet
              coiled-coil rootletin (KIAA0445), the MFAP2 gene for
              microfibrillar-associated protein 2, a novel gene, the gene
              for a novel protein, the SDHB gene for succinate
              dehydrogenase complex subunit B iron sulfur (Ip), the PADI2
              gene for type II peptidyl arginine deiminase, complete
              sequence
          Length = 216497

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    atccccatcatgcagcagag 292
              ||||||||||||||||||||
Sbjct: 154639 atccccatcatgcagcagag 154620
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>gb|AC164662.6| Mus musculus 10 BAC RP24-279D11 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 154482

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 604    ttgggttgtttcccatccgt 623
              ||||||||||||||||||||
Sbjct: 143127 ttgggttgtttcccatccgt 143146
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 112      agaagtttggcttagaaaaa 131
                ||||||||||||||||||||
Sbjct: 33106724 agaagtttggcttagaaaaa 33106743
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>gb|AC068904.44| Mus musculus strain C57BL/6J chromosome 9 clone rp23-221i11, complete
             sequence
          Length = 186063

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   gaggaagctatctatatcca 174
             ||||||||||||||||||||
Sbjct: 11543 gaggaagctatctatatcca 11562
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>gb|AC124982.13| Mus musculus chromosome 3, clone RP24-173F6, complete sequence
          Length = 180185

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 510    agaacagaaaccagatccaa 529
              ||||||||||||||||||||
Sbjct: 144132 agaacagaaaccagatccaa 144151
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>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1369_G08
          Length = 104190

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   agaagtttggcttagaaaaa 131
             ||||||||||||||||||||
Sbjct: 22384 agaagtttggcttagaaaaa 22403
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>gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, complete sequence
          Length = 210342

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 511    gaacagaaaccagatccaaa 530
              ||||||||||||||||||||
Sbjct: 116920 gaacagaaaccagatccaaa 116939
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>gb|CP000170.1| Drosophila melanogaster genomic scaffold 211000022279294
          Length = 79135

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 650   catgttcagatgtttcttca 669
             ||||||||||||||||||||
Sbjct: 52352 catgttcagatgtttcttca 52371
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>emb|CT476806.2| Pan troglodytes chromosome X BAC RP43-032D14, complete sequence
          Length = 145919

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 657   agatgtttcttcatactttc 676
             ||||||||||||||||||||
Sbjct: 92600 agatgtttcttcatactttc 92619
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>gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone rp23-222i2, complete
             sequence
          Length = 185413

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   gaggaagctatctatatcca 174
             ||||||||||||||||||||
Sbjct: 22631 gaggaagctatctatatcca 22612
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>gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosome 8, complete sequence
          Length = 221596

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   caagaggaagctatctatat 171
             ||||||||||||||||||||
Sbjct: 35728 caagaggaagctatctatat 35709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,132,131
Number of Sequences: 3902068
Number of extensions: 6132131
Number of successful extensions: 109901
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109590
Number of HSP's gapped (non-prelim): 307
length of query: 682
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 659
effective length of database: 17,143,297,704
effective search space: 11297433186936
effective search space used: 11297433186936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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