ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) ... 78 8e-12
2gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, p... 78 8e-12
3gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) ... 70 2e-09
4gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) ... 70 2e-09
5gb|AF384147.1|AF384147 Triticum aestivum cyclophilin mRNA, parti... 70 2e-09
6gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, p... 70 2e-09
7gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, c... 70 2e-09
8ref|XM_463914.1| Oryza sativa (japonica cultivar-group), mRNA 58 8e-06
9ref|XM_506694.1| PREDICTED Oryza sativa (japonica cultivar-group... 58 8e-06
10gb|AF263543.1| Oryza sativa clone 15CAC microsatellite sequence 58 8e-06
11gb|AF263542.1| Oryza sativa clone 19CAC microsatellite sequence 58 8e-06
12gb|DQ480736.1| Oryza sativa (indica cultivar-group) cyclophilinA... 58 8e-06
13dbj|AK061894.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 8e-06
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 58 8e-06
15dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic D... 58 8e-06
16dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic D... 58 8e-06
17dbj|AK098919.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 8e-06
18gb|L29469.1|RICCYP2G Oryza sativa cyclophilin 2 (Cyp2) gene, com... 58 8e-06
19dbj|D29701.1|RICYK13 Oryza sativa mRNA, partial homologous to cy... 48 0.007
20gb|L29470.1|RICCYP2R Oryza sativa cyclophilin 2 (Cyp2) mRNA, com... 44 0.12
21gb|AY391451.1| Danio rerio peptidylprolyl isomerase A (PPIA-1) m... 40 1.8
22ref|NM_199957.1| Danio rerio peptidylprolyl isomerase A, like (p... 40 1.8
23gb|BC071370.1| Danio rerio peptidylprolyl isomerase A, like, mRN... 40 1.8
24gb|U36797.1|HMU36797 Hirudo medicinalis cyclophilin-A mRNA (hcyp... 40 1.8
25gb|BC059470.1| Danio rerio peptidylprolyl isomerase A, like, mRN... 40 1.8
26ref|NM_194920.1| Oryza sativa (japonica cultivar-group) putative... 38 7.2
27gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome... 38 7.2
28ref|XM_361063.1| Magnaporthe grisea 70-15 hypothetical protein (... 38 7.2
29emb|BX015829.1|CNS08KDL Single read from an extremity of a full-... 38 7.2
30gb|AC164432.3| Mus musculus BAC clone RP23-394G23 from chromosom... 38 7.2
31gb|AC151992.3| Mus musculus BAC clone RP23-212H13 from chromosom... 38 7.2
32gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome... 38 7.2
33dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
34ref|XM_311308.2| Anopheles gambiae str. PEST ENSANGP00000017680 ... 38 7.2
35dbj|AK058898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.2
36gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 7.2

>gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) mRNA, complete cds
          Length = 869

 Score = 77.8 bits (39), Expect = 8e-12
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                     
Query: 108 ctagagctggccgcagtcggngatgacgacctgcttggagca 149
           |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 586 ctagagctggccgcagtcggcgatgacgacctgcttggagca 545



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>gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, partial cds
          Length = 494

 Score = 77.8 bits (39), Expect = 8e-12
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                     
Query: 108 ctagagctggccgcagtcggngatgacgacctgcttggagca 149
           |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 307 ctagagctggccgcagtcggcgatgacgacctgcttggagca 266



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>gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) mRNA, complete cds
          Length = 845

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                     
Query: 108 ctagagctggccgcagtcggngatgacgacctgcttggagca 149
           |||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 586 ctagagctggccgcagtcggcgatgacgacttgcttggagca 545



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>gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) mRNA, complete cds
          Length = 859

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                     
Query: 108 ctagagctggccgcagtcggngatgacgacctgcttggagca 149
           |||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 578 ctagagctggccgcagtcggcgatgaccacctgcttggagca 537



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>gb|AF384147.1|AF384147 Triticum aestivum cyclophilin mRNA, partial cds
          Length = 430

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 108 ctagagctggccgcagtcggngatgacgacctgcttgg 145
           |||||||||||||||||||| |||||||||||||||||
Sbjct: 396 ctagagctggccgcagtcggcgatgacgacctgcttgg 359



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>gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, partial cds
          Length = 519

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                     
Query: 108 ctagagctggccgcagtcggngatgacgacctgcttggagca 149
           |||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 308 ctagagctggccgcagtcggcgatgaccacctgcttggagca 267



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>gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, complete cds
          Length = 781

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                     
Query: 108 ctagagctggccgcagtcggngatgacgacctgcttggagca 149
           |||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 550 ctagagctggccgcagtcggcgatgacgacttgcttggagca 509



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>ref|XM_463914.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 885

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145
           |||||||||||||||||| |||||||||| ||||||
Sbjct: 607 agagctggccgcagtcggcgatgacgaccggcttgg 572



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>ref|XM_506694.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0088N06.23
           mRNA
          Length = 887

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145
           |||||||||||||||||| |||||||||| ||||||
Sbjct: 608 agagctggccgcagtcggcgatgacgaccggcttgg 573



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>gb|AF263543.1| Oryza sativa clone 15CAC microsatellite sequence
          Length = 435

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145
           |||||||||||||||||| |||||||||| ||||||
Sbjct: 120 agagctggccgcagtcggcgatgacgaccggcttgg 85



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>gb|AF263542.1| Oryza sativa clone 19CAC microsatellite sequence
          Length = 429

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145
           |||||||||||||||||| |||||||||| ||||||
Sbjct: 99  agagctggccgcagtcggcgatgacgaccggcttgg 64



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>gb|DQ480736.1| Oryza sativa (indica cultivar-group) cyclophilinA mRNA, complete
           cds
          Length = 588

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145
           |||||||||||||||||| |||||||||| ||||||
Sbjct: 524 agagctggccgcagtcggcgatgacgaccggcttgg 489



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>dbj|AK061894.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G07, full
           insert sequence
          Length = 887

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145
           |||||||||||||||||| |||||||||| ||||||
Sbjct: 608 agagctggccgcagtcggcgatgacgaccggcttgg 573



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                   
Query: 110     agagctggccgcagtcggngatgacgacctgcttgg 145
               |||||||||||||||||| |||||||||| ||||||
Sbjct: 1116673 agagctggccgcagtcggcgatgacgaccggcttgg 1116638



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>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1020_C02
          Length = 124578

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 110   agagctggccgcagtcggngatgacgacctgcttgg 145
             |||||||||||||||||| |||||||||| ||||||
Sbjct: 69197 agagctggccgcagtcggcgatgacgaccggcttgg 69162



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>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0088N06
          Length = 123454

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 110    agagctggccgcagtcggngatgacgacctgcttgg 145
              |||||||||||||||||| |||||||||| ||||||
Sbjct: 105381 agagctggccgcagtcggcgatgacgaccggcttgg 105346



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>dbj|AK098919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N03, full
           insert sequence
          Length = 885

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145
           |||||||||||||||||| |||||||||| ||||||
Sbjct: 607 agagctggccgcagtcggcgatgacgaccggcttgg 572



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>gb|L29469.1|RICCYP2G Oryza sativa cyclophilin 2 (Cyp2) gene, complete cds
          Length = 2323

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 110  agagctggccgcagtcggngatgacgacctgcttgg 145
            |||||||||||||||||| |||||||||| ||||||
Sbjct: 1663 agagctggccgcagtcggcgatgacgaccggcttgg 1628



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>dbj|D29701.1|RICYK13 Oryza sativa mRNA, partial homologous to cyclophilin gene
          Length = 356

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 115 tggccgcagtcggngatgacgacctgcttgg 145
           ||||||||||||| |||||||||| ||||||
Sbjct: 260 tggccgcagtcggcgatgacgaccggcttgg 230



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>gb|L29470.1|RICCYP2R Oryza sativa cyclophilin 2 (Cyp2) mRNA, complete cds
          Length = 824

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 110 agagctggccgcagtcggngatgac 134
           |||||||||||||||||| ||||||
Sbjct: 552 agagctggccgcagtcggcgatgac 528



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>gb|AY391451.1| Danio rerio peptidylprolyl isomerase A (PPIA-1) mRNA, complete cds
          Length = 743

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 109 tagagctggccgcagtcggngatgacgacct 139
           |||||||||||||||| || ||| |||||||
Sbjct: 557 tagagctggccgcagttggcgatcacgacct 527



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>ref|NM_199957.1| Danio rerio peptidylprolyl isomerase A, like (ppial), mRNA
          Length = 822

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 109 tagagctggccgcagtcggngatgacgacct 139
           |||||||||||||||| || ||| |||||||
Sbjct: 634 tagagctggccgcagttggcgatcacgacct 604



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>gb|BC071370.1| Danio rerio peptidylprolyl isomerase A, like, mRNA (cDNA clone
           MGC:86688 IMAGE:6895545), complete cds
          Length = 784

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 109 tagagctggccgcagtcggngatgacgacct 139
           |||||||||||||||| || ||| |||||||
Sbjct: 566 tagagctggccgcagttggcgatcacgacct 536



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>gb|U36797.1|HMU36797 Hirudo medicinalis cyclophilin-A mRNA (hcyp),complete cds
          Length = 617

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 109 tagagctggccgcagtcggngat 131
           ||||||||||||||||||| |||
Sbjct: 482 tagagctggccgcagtcggcgat 460



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>gb|BC059470.1| Danio rerio peptidylprolyl isomerase A, like, mRNA (cDNA clone
           MGC:73102 IMAGE:4786094), complete cds
          Length = 822

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 109 tagagctggccgcagtcggngatgacgacct 139
           |||||||||||||||| || ||| |||||||
Sbjct: 634 tagagctggccgcagttggcgatcacgacct 604



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>ref|NM_194920.1| Oryza sativa (japonica cultivar-group) putative cyclophilin
           (OSJNAa0034B05.5), mRNA
          Length = 546

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 27/30 (90%)
 Strand = Plus / Minus

                                         
Query: 108 ctagagctggccgcagtcggngatgacgac 137
           |||||||  ||||||||||| |||||||||
Sbjct: 546 ctagagcacgccgcagtcggtgatgacgac 517



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>gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBa0004E08, complete sequence
          Length = 158294

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 27/30 (90%)
 Strand = Plus / Minus

                                          
Query: 108  ctagagctggccgcagtcggngatgacgac 137
            |||||||  ||||||||||| |||||||||
Sbjct: 9276 ctagagcacgccgcagtcggtgatgacgac 9247



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>ref|XM_361063.1| Magnaporthe grisea 70-15 hypothetical protein (MG03606.4) partial
           mRNA
          Length = 1452

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 129 gatgacgacctgcttggag 147
           |||||||||||||||||||
Sbjct: 318 gatgacgacctgcttggag 300



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>emb|BX015829.1|CNS08KDL Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA23DA10 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 827

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 7   ggggcaagacacgacacga 25
           |||||||||||||||||||
Sbjct: 355 ggggcaagacacgacacga 337



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>gb|AC164432.3| Mus musculus BAC clone RP23-394G23 from chromosome 8, complete sequence
          Length = 220224

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 131    tgacgacctgcttggagca 149
              |||||||||||||||||||
Sbjct: 168082 tgacgacctgcttggagca 168100



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>gb|AC151992.3| Mus musculus BAC clone RP23-212H13 from chromosome 8, complete sequence
          Length = 182428

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 131   tgacgacctgcttggagca 149
             |||||||||||||||||||
Sbjct: 47049 tgacgacctgcttggagca 47067



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>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0034B05, complete sequence
          Length = 125655

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 27/30 (90%)
 Strand = Plus / Minus

                                           
Query: 108   ctagagctggccgcagtcggngatgacgac 137
             |||||||  ||||||||||| |||||||||
Sbjct: 74931 ctagagcacgccgcagtcggtgatgacgac 74902



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 27/30 (90%)
 Strand = Plus / Minus

                                             
Query: 108     ctagagctggccgcagtcggngatgacgac 137
               |||||||  ||||||||||| |||||||||
Sbjct: 3418147 ctagagcacgccgcagtcggtgatgacgac 3418118



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>ref|XM_311308.2| Anopheles gambiae str. PEST ENSANGP00000017680
           (ENSANGG00000015191), partial mRNA
          Length = 860

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 7   ggggcaagacacgacacga 25
           |||||||||||||||||||
Sbjct: 390 ggggcaagacacgacacga 372



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>dbj|AK058898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-H03, full
           insert sequence
          Length = 927

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 27/30 (90%)
 Strand = Plus / Minus

                                         
Query: 108 ctagagctggccgcagtcggngatgacgac 137
           |||||||  ||||||||||| |||||||||
Sbjct: 668 ctagagcacgccgcagtcggtgatgacgac 639



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 27/30 (90%)
 Strand = Plus / Minus

                                             
Query: 108     ctagagctggccgcagtcggngatgacgac 137
               |||||||  ||||||||||| |||||||||
Sbjct: 3418068 ctagagcacgccgcagtcggtgatgacgac 3418039


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 228,506
Number of Sequences: 3902068
Number of extensions: 228506
Number of successful extensions: 11217
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11169
Number of HSP's gapped (non-prelim): 48
length of query: 149
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 128
effective length of database: 17,151,101,840
effective search space: 2195341035520
effective search space used: 2195341035520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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