| Clone Name | rbags14c01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF262984.1|AF262984 Triticum aestivum cyclophilin A-3 (CyP3) mRNA, complete cds Length = 869 Score = 77.8 bits (39), Expect = 8e-12 Identities = 41/42 (97%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgacctgcttggagca 149 |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 586 ctagagctggccgcagtcggcgatgacgacctgcttggagca 545
>gb|AY456124.1| Triticum aestivum cyclophilin A (CYP18-3) gene, partial cds Length = 494 Score = 77.8 bits (39), Expect = 8e-12 Identities = 41/42 (97%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgacctgcttggagca 149 |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 307 ctagagctggccgcagtcggcgatgacgacctgcttggagca 266
>gb|AF262983.1|AF262983 Triticum aestivum cyclophilin A-2 (CyP2) mRNA, complete cds Length = 845 Score = 69.9 bits (35), Expect = 2e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgacctgcttggagca 149 |||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 586 ctagagctggccgcagtcggcgatgacgacttgcttggagca 545
>gb|AF262982.1|AF262982 Triticum aestivum cyclophilin A-1 (CyP1) mRNA, complete cds Length = 859 Score = 69.9 bits (35), Expect = 2e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgacctgcttggagca 149 |||||||||||||||||||| |||||| |||||||||||||| Sbjct: 578 ctagagctggccgcagtcggcgatgaccacctgcttggagca 537
>gb|AF384147.1|AF384147 Triticum aestivum cyclophilin mRNA, partial cds Length = 430 Score = 69.9 bits (35), Expect = 2e-09 Identities = 37/38 (97%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgacctgcttgg 145 |||||||||||||||||||| ||||||||||||||||| Sbjct: 396 ctagagctggccgcagtcggcgatgacgacctgcttgg 359
>gb|AY456123.1| Triticum aestivum cyclophilin A (CYP18-1) gene, partial cds Length = 519 Score = 69.9 bits (35), Expect = 2e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgacctgcttggagca 149 |||||||||||||||||||| |||||| |||||||||||||| Sbjct: 308 ctagagctggccgcagtcggcgatgaccacctgcttggagca 267
>gb|AY456122.1| Triticum aestivum cyclophilin A (CYP18-2) gene, complete cds Length = 781 Score = 69.9 bits (35), Expect = 2e-09 Identities = 40/42 (95%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgacctgcttggagca 149 |||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 550 ctagagctggccgcagtcggcgatgacgacttgcttggagca 509
>ref|XM_463914.1| Oryza sativa (japonica cultivar-group), mRNA Length = 885 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145 |||||||||||||||||| |||||||||| |||||| Sbjct: 607 agagctggccgcagtcggcgatgacgaccggcttgg 572
>ref|XM_506694.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0088N06.23 mRNA Length = 887 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145 |||||||||||||||||| |||||||||| |||||| Sbjct: 608 agagctggccgcagtcggcgatgacgaccggcttgg 573
>gb|AF263543.1| Oryza sativa clone 15CAC microsatellite sequence Length = 435 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145 |||||||||||||||||| |||||||||| |||||| Sbjct: 120 agagctggccgcagtcggcgatgacgaccggcttgg 85
>gb|AF263542.1| Oryza sativa clone 19CAC microsatellite sequence Length = 429 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145 |||||||||||||||||| |||||||||| |||||| Sbjct: 99 agagctggccgcagtcggcgatgacgaccggcttgg 64
>gb|DQ480736.1| Oryza sativa (indica cultivar-group) cyclophilinA mRNA, complete cds Length = 588 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145 |||||||||||||||||| |||||||||| |||||| Sbjct: 524 agagctggccgcagtcggcgatgacgaccggcttgg 489
>dbj|AK061894.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G07, full insert sequence Length = 887 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145 |||||||||||||||||| |||||||||| |||||| Sbjct: 608 agagctggccgcagtcggcgatgacgaccggcttgg 573
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145 |||||||||||||||||| |||||||||| |||||| Sbjct: 1116673 agagctggccgcagtcggcgatgacgaccggcttgg 1116638
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1020_C02 Length = 124578 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145 |||||||||||||||||| |||||||||| |||||| Sbjct: 69197 agagctggccgcagtcggcgatgacgaccggcttgg 69162
>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0088N06 Length = 123454 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145 |||||||||||||||||| |||||||||| |||||| Sbjct: 105381 agagctggccgcagtcggcgatgacgaccggcttgg 105346
>dbj|AK098919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N03, full insert sequence Length = 885 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145 |||||||||||||||||| |||||||||| |||||| Sbjct: 607 agagctggccgcagtcggcgatgacgaccggcttgg 572
>gb|L29469.1|RICCYP2G Oryza sativa cyclophilin 2 (Cyp2) gene, complete cds Length = 2323 Score = 58.0 bits (29), Expect = 8e-06 Identities = 34/36 (94%) Strand = Plus / Minus Query: 110 agagctggccgcagtcggngatgacgacctgcttgg 145 |||||||||||||||||| |||||||||| |||||| Sbjct: 1663 agagctggccgcagtcggcgatgacgaccggcttgg 1628
>dbj|D29701.1|RICYK13 Oryza sativa mRNA, partial homologous to cyclophilin gene Length = 356 Score = 48.1 bits (24), Expect = 0.007 Identities = 29/31 (93%) Strand = Plus / Minus Query: 115 tggccgcagtcggngatgacgacctgcttgg 145 ||||||||||||| |||||||||| |||||| Sbjct: 260 tggccgcagtcggcgatgacgaccggcttgg 230
>gb|L29470.1|RICCYP2R Oryza sativa cyclophilin 2 (Cyp2) mRNA, complete cds Length = 824 Score = 44.1 bits (22), Expect = 0.12 Identities = 24/25 (96%) Strand = Plus / Minus Query: 110 agagctggccgcagtcggngatgac 134 |||||||||||||||||| |||||| Sbjct: 552 agagctggccgcagtcggcgatgac 528
>gb|AY391451.1| Danio rerio peptidylprolyl isomerase A (PPIA-1) mRNA, complete cds Length = 743 Score = 40.1 bits (20), Expect = 1.8 Identities = 28/31 (90%) Strand = Plus / Minus Query: 109 tagagctggccgcagtcggngatgacgacct 139 |||||||||||||||| || ||| ||||||| Sbjct: 557 tagagctggccgcagttggcgatcacgacct 527
>ref|NM_199957.1| Danio rerio peptidylprolyl isomerase A, like (ppial), mRNA Length = 822 Score = 40.1 bits (20), Expect = 1.8 Identities = 28/31 (90%) Strand = Plus / Minus Query: 109 tagagctggccgcagtcggngatgacgacct 139 |||||||||||||||| || ||| ||||||| Sbjct: 634 tagagctggccgcagttggcgatcacgacct 604
>gb|BC071370.1| Danio rerio peptidylprolyl isomerase A, like, mRNA (cDNA clone MGC:86688 IMAGE:6895545), complete cds Length = 784 Score = 40.1 bits (20), Expect = 1.8 Identities = 28/31 (90%) Strand = Plus / Minus Query: 109 tagagctggccgcagtcggngatgacgacct 139 |||||||||||||||| || ||| ||||||| Sbjct: 566 tagagctggccgcagttggcgatcacgacct 536
>gb|U36797.1|HMU36797 Hirudo medicinalis cyclophilin-A mRNA (hcyp),complete cds Length = 617 Score = 40.1 bits (20), Expect = 1.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 109 tagagctggccgcagtcggngat 131 ||||||||||||||||||| ||| Sbjct: 482 tagagctggccgcagtcggcgat 460
>gb|BC059470.1| Danio rerio peptidylprolyl isomerase A, like, mRNA (cDNA clone MGC:73102 IMAGE:4786094), complete cds Length = 822 Score = 40.1 bits (20), Expect = 1.8 Identities = 28/31 (90%) Strand = Plus / Minus Query: 109 tagagctggccgcagtcggngatgacgacct 139 |||||||||||||||| || ||| ||||||| Sbjct: 634 tagagctggccgcagttggcgatcacgacct 604
>ref|NM_194920.1| Oryza sativa (japonica cultivar-group) putative cyclophilin (OSJNAa0034B05.5), mRNA Length = 546 Score = 38.2 bits (19), Expect = 7.2 Identities = 27/30 (90%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgac 137 ||||||| ||||||||||| ||||||||| Sbjct: 546 ctagagcacgccgcagtcggtgatgacgac 517
>gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0004E08, complete sequence Length = 158294 Score = 38.2 bits (19), Expect = 7.2 Identities = 27/30 (90%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgac 137 ||||||| ||||||||||| ||||||||| Sbjct: 9276 ctagagcacgccgcagtcggtgatgacgac 9247
>ref|XM_361063.1| Magnaporthe grisea 70-15 hypothetical protein (MG03606.4) partial mRNA Length = 1452 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 129 gatgacgacctgcttggag 147 ||||||||||||||||||| Sbjct: 318 gatgacgacctgcttggag 300
>emb|BX015829.1|CNS08KDL Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA23DA10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 827 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 ggggcaagacacgacacga 25 ||||||||||||||||||| Sbjct: 355 ggggcaagacacgacacga 337
>gb|AC164432.3| Mus musculus BAC clone RP23-394G23 from chromosome 8, complete sequence Length = 220224 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 tgacgacctgcttggagca 149 ||||||||||||||||||| Sbjct: 168082 tgacgacctgcttggagca 168100
>gb|AC151992.3| Mus musculus BAC clone RP23-212H13 from chromosome 8, complete sequence Length = 182428 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 tgacgacctgcttggagca 149 ||||||||||||||||||| Sbjct: 47049 tgacgacctgcttggagca 47067
>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0034B05, complete sequence Length = 125655 Score = 38.2 bits (19), Expect = 7.2 Identities = 27/30 (90%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgac 137 ||||||| ||||||||||| ||||||||| Sbjct: 74931 ctagagcacgccgcagtcggtgatgacgac 74902
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 7.2 Identities = 27/30 (90%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgac 137 ||||||| ||||||||||| ||||||||| Sbjct: 3418147 ctagagcacgccgcagtcggtgatgacgac 3418118
>ref|XM_311308.2| Anopheles gambiae str. PEST ENSANGP00000017680 (ENSANGG00000015191), partial mRNA Length = 860 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 ggggcaagacacgacacga 25 ||||||||||||||||||| Sbjct: 390 ggggcaagacacgacacga 372
>dbj|AK058898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-H03, full insert sequence Length = 927 Score = 38.2 bits (19), Expect = 7.2 Identities = 27/30 (90%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgac 137 ||||||| ||||||||||| ||||||||| Sbjct: 668 ctagagcacgccgcagtcggtgatgacgac 639
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 7.2 Identities = 27/30 (90%) Strand = Plus / Minus Query: 108 ctagagctggccgcagtcggngatgacgac 137 ||||||| ||||||||||| ||||||||| Sbjct: 3418068 ctagagcacgccgcagtcggtgatgacgac 3418039 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 228,506 Number of Sequences: 3902068 Number of extensions: 228506 Number of successful extensions: 11217 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11169 Number of HSP's gapped (non-prelim): 48 length of query: 149 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 128 effective length of database: 17,151,101,840 effective search space: 2195341035520 effective search space used: 2195341035520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)