ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14b23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FTHS_PICTO (Q6KZM3) Formate--tetrahydrofolate ligase (EC 6.3.4.3... 32 1.2
2WRK63_ARATH (Q9C6H5) Probable WRKY transcription factor 63 (WRKY... 32 1.6
3WRK64_ARATH (Q9C557) Probable WRKY transcription factor 64 (WRKY... 31 2.7
4HOX7P_XENLA (P35993) Homeobox protein XHOX-7.1' (Fragment) 30 4.7
5FAT2_RAT (O88277) Protocadherin Fat 2 precursor (Multiple epider... 30 6.1

>FTHS_PICTO (Q6KZM3) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 535

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 297 DHMPMVFHT*PEPKFLHRTSAMLGRVPSFACFDSISTPFVGKADIG 160
           +H+P + HT P     H TS++LG +     FD + T     +D+G
Sbjct: 246 EHVPAIIHTGPFGNIAHGTSSILGDIIGLKMFDYLVTEAGFGSDLG 291



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>WRK63_ARATH (Q9C6H5) Probable WRKY transcription factor 63 (WRKY DNA-binding|
           protein 63)
          Length = 241

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +3

Query: 135 MAPLYPT-SNQYQLFPQKGLKYYRNKQ---KMERGLTWRKYGAK 254
           MA L P  S++ ++   KGL+ YR+     +++ G TWRKYG K
Sbjct: 71  MAGLVPQRSSKKKICGVKGLEIYRDDSPNPRLDDGFTWRKYGQK 114



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>WRK64_ARATH (Q9C557) Probable WRKY transcription factor 64 (WRKY DNA-binding|
           protein 64)
          Length = 249

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
 Frame = +3

Query: 156 SNQYQLFPQKGLKYYRNKQKMER---GLTWRKYG---AKISAQVRC------GKPLACDL 299
           S++ + +  + L+YYR++    R   G TWRKYG    K S   RC       K   C+ 
Sbjct: 79  SSKKKYYGAEDLEYYRDESPTPRPDDGFTWRKYGQKTIKTSPYQRCYYRCTYAKDQNCNA 138

Query: 300 AKRYWM 317
            KR  M
Sbjct: 139 RKRVQM 144



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>HOX7P_XENLA (P35993) Homeobox protein XHOX-7.1' (Fragment)|
          Length = 291

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 180 QKGLKYYR-NKQKMERGLTWRKYGAKISAQVRCGKPLACDLAK 305
           QKGLK  R N++  E G +W K G   S   R   P +C L K
Sbjct: 114 QKGLKPRRSNRKNSEDGTSWSKDGGSYSPPPRHLSPSSCTLRK 156



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>FAT2_RAT (O88277) Protocadherin Fat 2 precursor (Multiple epidermal growth|
           factor-like domains 1)
          Length = 4351

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 429 KCEVIKDITVGIKS*AGIAAEDIGNIALLMAMNYYVNTSSSALRDHMP 286
           K  V+  IT  I   AG+ ++++G        NY +N  S    DH P
Sbjct: 672 KTGVLTHITKTILQSAGLQSQELGEEEFTSLSNYQINHHSPQFEDHFP 719


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,294,910
Number of Sequences: 219361
Number of extensions: 1986915
Number of successful extensions: 4625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4625
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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