ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13m18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nucle... 176 6e-41
2dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds 133 8e-28
3gb|AY108503.1| Zea mays PCO102923 mRNA sequence 94 7e-16
4ref|XM_474151.1| Oryza sativa (japonica cultivar-group), predic... 86 2e-13
5dbj|AK059436.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-13
6dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, compl... 86 2e-13
7dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 7e-13
8emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4,... 74 6e-10
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
10emb|AL732538.6| Mouse DNA sequence from clone RP23-242O9 on chro... 50 0.009
11emb|BX323086.4| Zebrafish DNA sequence from clone DKEY-170I11 in... 46 0.15
12emb|CR854846.8| Zebrafish DNA sequence from clone DKEY-228N9 in ... 46 0.15
13emb|CR381700.6| Zebrafish DNA sequence from clone CH211-198F4 in... 44 0.58
14gb|AC154392.18| Mus musculus chromosome 1, clone RP23-413K6, com... 42 2.3
15gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete seq... 42 2.3
16ref|NM_187590.1| Oryza sativa (japonica cultivar-group), predic... 40 9.1
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.1
18ref|XM_447002.1| Candida glabrata CBS138, CAGL0H04763g partial mRNA 40 9.1
19gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 9.1
20gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
21emb|CR380954.1| Candida glabrata strain CBS138 chromosome H comp... 40 9.1
22gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
23gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
25gb|AC154854.2| Mus musculus BAC clone RP23-23O4 from chromosome ... 40 9.1
26gb|AE004989.1| Halobacterium sp. NRC-1 section 20 of 170 of the ... 40 9.1
27dbj|AK121246.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
28dbj|AK059624.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
29gb|AF112193.1|AF112193 Ictalurus punctatus strain Kansas XbaI el... 40 9.1
30emb|AL935203.12| Zebrafish DNA sequence from clone CH211-256A21 ... 40 9.1
31dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1 
>emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nuclease (bnuc2 gene)
          Length = 1139

 Score =  176 bits (89), Expect = 6e-41
 Identities = 158/181 (87%)
 Strand = Plus / Minus

                                                                       
Query: 299 cgttcttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcga 358
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 911 cgttcttcccgctgaagatccggttgaggatcgccgccagcctgacgccgccctgagcga 852

                                                                       
Query: 359 tcctcttctgaacgaccggcagcgctttgaagaagtactcatcttctaagttggagccat 418
           ||| ||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| | |
Sbjct: 851 tccgcttctgaacgaccggcagcgccttgaagtagtactcatctcctaaggtggagtcct 792

                                                                       
Query: 419 ggtcagcgcccacgtacgcggggcacgacagctccgcgctctcctccgcgtacttgtcag 478
           | |   |||||  |||||||  ||| | |||| | || |||||||| |||||||||||||
Sbjct: 791 gcttgacgcccttgtacgcgtcgcaggccagcactgcactctcctcagcgtacttgtcag 732

            
Query: 479 c 479
           |
Sbjct: 731 c 731



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 610 tcgatgacgttcacgtcccacaccttgtggaggttggtctt 650
           |||||||||| |||||||||||| | ||| |||||| ||||
Sbjct: 600 tcgatgacgtccacgtcccacacgtggtgcaggttgctctt 560
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>dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds
          Length = 1180

 Score =  133 bits (67), Expect = 8e-28
 Identities = 91/99 (91%)
 Strand = Plus / Minus

                                                                       
Query: 304 ttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatcctc 363
           ||||| |||||||||||||||||||| ||||||||||| | ||| ||||| |||| ||||
Sbjct: 899 ttcccgctgaagatccggttgaggatggccgccagcctcaagcccccctgggcgagcctc 840

                                                  
Query: 364 ttctgaacgaccggcagcgctttgaagaagtactcatct 402
           ||||||||||||||||||||||||||| |||||||||||
Sbjct: 839 ttctgaacgaccggcagcgctttgaagtagtactcatct 801
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>gb|AY108503.1| Zea mays PCO102923 mRNA sequence
          Length = 476

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                       
Query: 316 atccggttgaggatcgccgccagcctgacgccaccctgagcgatcctcttctgaacgacc 375
           |||| |||||||||||| |||||||||||||| || || ||||||||||||||||| |||
Sbjct: 105 atcctgttgaggatcgcggccagcctgacgcctccttgcgcgatcctcttctgaaccacc 46

                                      
Query: 376 ggcagcgctttgaagaagtactcatct 402
           ||||||||   ||||||||| ||||||
Sbjct: 45  ggcagcgcggcgaagaagtagtcatct 19
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>ref|XM_474151.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 148/183 (80%)
 Strand = Plus / Minus

                                                                       
Query: 304 ttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatcctc 363
           ||||| ||||||||||||||||| || || || ||||| |||||||| ||||| ||||||
Sbjct: 854 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 795

                                                                       
Query: 364 ttctgaacgaccggcagcgctttgaagaagtactcatcttctaagttggagccatggtca 423
           |||||||| || ||||| ||   |||||| || |||||||||||| ||||  | || |||
Sbjct: 794 ttctgaacaacaggcagggcagcgaagaaatagtcatcttctaaggtggattcttgctca 735

                                                                       
Query: 424 gcgcccacgtacgcggggcacgacagctccgcgctctcctccgcgtacttgtcagcacaa 483
            | ||| |||||||   |||||  ||||  || |||||||| |||||||| || ||||||
Sbjct: 734 acaccctcgtacgctttgcacgcgagctttgcactctcctcggcgtacttatcggcacaa 675

              
Query: 484 gtc 486
           |||
Sbjct: 674 gtc 672



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 552 cttgatggcgttgaccatggtgctcatgtcgtccttgtagaacctgttcatggccgtttc 611
           ||||||||| || | ||| ||||||| ||| || ||||||||    |||| |||||||||
Sbjct: 606 cttgatggcctttatcatcgtgctcacgtcctcgttgtagaattccttcaaggccgtttc 547

                                
Query: 612 gatgacgttcacgtcccacac 632
            ||||||||||| ||||||||
Sbjct: 546 aatgacgttcacatcccacac 526
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>dbj|AK059436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F11, full
           insert sequence
          Length = 484

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 148/183 (80%)
 Strand = Plus / Minus

                                                                       
Query: 304 ttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatcctc 363
           ||||| ||||||||||||||||| || || || ||||| |||||||| ||||| ||||||
Sbjct: 255 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 196

                                                                       
Query: 364 ttctgaacgaccggcagcgctttgaagaagtactcatcttctaagttggagccatggtca 423
           |||||||| || ||||| ||   |||||| || |||||||||||| ||||  | || |||
Sbjct: 195 ttctgaacaacaggcagggcagcgaagaaatagtcatcttctaaggtggattcttgctca 136

                                                                       
Query: 424 gcgcccacgtacgcggggcacgacagctccgcgctctcctccgcgtacttgtcagcacaa 483
            | ||| |||||||   |||||  ||||  || |||||||| |||||||| || ||||||
Sbjct: 135 acaccctcgtacgctttgcacgcgagctttgcactctcctcggcgtacttatcggcacaa 76

              
Query: 484 gtc 486
           |||
Sbjct: 75  gtc 73
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>dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, complete cds
          Length = 1283

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                       
Query: 301 ttcttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatc 360
           |||||||||||||||||| |||| |||||| |||||||||| ||||| |||||||| |||
Sbjct: 933 ttcttcccactgaagatctggttaaggatcaccgccagcctcacgcctccctgagctatc 874

                  
Query: 361 ctcttct 367
           |||||||
Sbjct: 873 ctcttct 867
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>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full
           insert sequence
          Length = 1146

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 93/110 (84%)
 Strand = Plus / Minus

                                                                       
Query: 304 ttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatcctc 363
           ||||| ||||||||||||||||| || || || ||||| |||||||| ||||| ||||||
Sbjct: 880 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 821

                                                             
Query: 364 ttctgaacgaccggcagcgctttgaagaagtactcatcttctaagttgga 413
           |||||||| || ||||| ||   |||||| || |||||||||||| ||||
Sbjct: 820 ttctgaacaacaggcagggcagcgaagaaatagtcatcttctaaggtgga 771



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 552 cttgatggcgttgaccatggtgctcatgtcgtccttgtagaacctgttcatggccgtttc 611
           ||||||||| || | ||| ||||||| ||| || ||||||||    |||| |||||||||
Sbjct: 632 cttgatggcctttatcatcgtgctcacgtcctcgttgtagaattccttcaaggccgtttc 573

                                
Query: 612 gatgacgttcacgtcccacac 632
            ||||||||||| ||||||||
Sbjct: 572 aatgacgttcacatcccacac 552
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>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
             complete sequence
          Length = 151506

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                         
Query: 304   ttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatcctc 363
             ||||| ||||||||||||||||| || || || ||||| |||||||| ||||| ||||||
Sbjct: 62465 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 62406

                              
Query: 364   ttctgaacgaccggcag 380
             |||||||| || |||||
Sbjct: 62405 ttctgaacaacaggcag 62389



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 552   cttgatggcgttgaccatggtgctcatgtcgtccttgtagaacctgttcatggccgtttc 611
             ||||||||| || | ||| ||||||| ||| || ||||||||    |||| |||||||||
Sbjct: 61921 cttgatggcctttatcatcgtgctcacgtcctcgttgtagaattccttcaaggccgtttc 61862

                                    
Query: 612   gatgacgttcacgtcccacacct 634
              ||||||||||| ||||||||||
Sbjct: 61861 aatgacgttcacatcccacacct 61839
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                            
Query: 304      ttcccactgaagatccggttgaggatcgccgccagcctgacgccaccctgagcgatcctc 363
                ||||| ||||||||||||||||| || || || ||||| |||||||| ||||| ||||||
Sbjct: 33290204 ttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcctc 33290145

                                 
Query: 364      ttctgaacgaccggcag 380
                |||||||| || |||||
Sbjct: 33290144 ttctgaacaacaggcag 33290128



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                            
Query: 552      cttgatggcgttgaccatggtgctcatgtcgtccttgtagaacctgttcatggccgtttc 611
                ||||||||| || | ||| ||||||| ||| || ||||||||    |||| |||||||||
Sbjct: 33289660 cttgatggcctttatcatcgtgctcacgtcctcgttgtagaattccttcaaggccgtttc 33289601

                                       
Query: 612      gatgacgttcacgtcccacacct 634
                 ||||||||||| ||||||||||
Sbjct: 33289600 aatgacgttcacatcccacacct 33289578
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>emb|AL732538.6| Mouse DNA sequence from clone RP23-242O9 on chromosome 4, complete
              sequence
          Length = 172802

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 196    aatctctctaatcttattattgttcataa 224
              |||||||||| ||||||||||||||||||
Sbjct: 111585 aatctctctattcttattattgttcataa 111557
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>emb|BX323086.4| Zebrafish DNA sequence from clone DKEY-170I11 in linkage group 20,
              complete sequence
          Length = 183026

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 197    atctctctaatcttattattgtt 219
              |||||||||||||||||||||||
Sbjct: 135212 atctctctaatcttattattgtt 135190
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>emb|CR854846.8| Zebrafish DNA sequence from clone DKEY-228N9 in linkage group 11,
              complete sequence
          Length = 202364

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 197    atctctctaatcttattattgtt 219
              |||||||||||||||||||||||
Sbjct: 173013 atctctctaatcttattattgtt 172991
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>emb|CR381700.6| Zebrafish DNA sequence from clone CH211-198F4 in linkage group 14,
              complete sequence
          Length = 203630

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 197    atctctctaatcttattattgt 218
              ||||||||||||||||||||||
Sbjct: 187260 atctctctaatcttattattgt 187281
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>gb|AC154392.18| Mus musculus chromosome 1, clone RP23-413K6, complete sequence
          Length = 205076

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 591   gaacctgttcatggccgtttcgatg 615
             ||||||||||||| |||||||||||
Sbjct: 49969 gaacctgttcatgaccgtttcgatg 49993
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>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence
          Length = 116601

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 203   ctaatcttattattgttcata 223
             |||||||||||||||||||||
Sbjct: 44829 ctaatcttattattgttcata 44849
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>ref|NM_187590.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1206

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 550 tgcttgatggcgttgaccatggtg 573
           ||||||||||| ||||||||||||
Sbjct: 482 tgcttgatggccttgaccatggtg 459
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 237     ccttgcacaatgtccttcgt 256
               ||||||||||||||||||||
Sbjct: 1665417 ccttgcacaatgtccttcgt 1665436



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 550     tgcttgatggcgttgaccatggtg 573
               ||||||||||| ||||||||||||
Sbjct: 1559673 tgcttgatggccttgaccatggtg 1559650
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>ref|XM_447002.1| Candida glabrata CBS138, CAGL0H04763g partial mRNA
          Length = 1152

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 628 cacaccttgtggaggttggt 647
           ||||||||||||||||||||
Sbjct: 276 cacaccttgtggaggttggt 257
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 552    cttgatggcgttgaccatgg 571
              ||||||||||||||||||||
Sbjct: 178312 cttgatggcgttgaccatgg 178331
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>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07,
             complete sequence
          Length = 87592

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   ccttgcacaatgtccttcgt 256
             ||||||||||||||||||||
Sbjct: 73639 ccttgcacaatgtccttcgt 73658
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>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence
          Length = 1050361

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 628    cacaccttgtggaggttggt 647
              ||||||||||||||||||||
Sbjct: 454864 cacaccttgtggaggttggt 454845
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>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07,
             complete sequence
          Length = 117612

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 550   tgcttgatggcgttgaccatggtg 573
             ||||||||||| ||||||||||||
Sbjct: 96846 tgcttgatggccttgaccatggtg 96823
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>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
             complete sequence
          Length = 127098

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 550   tgcttgatggcgttgaccatggtg 573
             ||||||||||| ||||||||||||
Sbjct: 39234 tgcttgatggccttgaccatggtg 39211
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 237     ccttgcacaatgtccttcgt 256
               ||||||||||||||||||||
Sbjct: 1665415 ccttgcacaatgtccttcgt 1665434



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 550     tgcttgatggcgttgaccatggtg 573
               ||||||||||| ||||||||||||
Sbjct: 1559671 tgcttgatggccttgaccatggtg 1559648
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>gb|AC154854.2| Mus musculus BAC clone RP23-23O4 from chromosome 16, complete sequence
          Length = 209970

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    attaatttacttcatctcat 100
             ||||||||||||||||||||
Sbjct: 54989 attaatttacttcatctcat 55008
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>gb|AE004989.1| Halobacterium sp. NRC-1 section 20 of 170 of the complete genome
          Length = 14108

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 597  gttcatggccgtttcgatgacgttcacg 624
            ||||| |||||| |||||||||||||||
Sbjct: 7877 gttcacggccgtgtcgatgacgttcacg 7850
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>dbj|AK121246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099J16, full
           insert sequence
          Length = 1531

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 550 tgcttgatggcgttgaccatggtg 573
           ||||||||||| ||||||||||||
Sbjct: 610 tgcttgatggccttgaccatggtg 587
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>dbj|AK059624.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H06, full
           insert sequence
          Length = 683

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 237 ccttgcacaatgtccttcgt 256
           ||||||||||||||||||||
Sbjct: 513 ccttgcacaatgtccttcgt 494
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>gb|AF112193.1|AF112193 Ictalurus punctatus strain Kansas XbaI element 1, complete sequence
          Length = 325

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 acatagtatagtactatgaa 170
           ||||||||||||||||||||
Sbjct: 208 acatagtatagtactatgaa 227
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>emb|AL935203.12| Zebrafish DNA sequence from clone CH211-256A21 in linkage group 25,
              complete sequence
          Length = 163572

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 450    ctccgcgctctcctccgcgt 469
              ||||||||||||||||||||
Sbjct: 131298 ctccgcgctctcctccgcgt 131317
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>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
             clone:P0043E01
          Length = 154128

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   ccttgcacaatgtccttcgt 256
             ||||||||||||||||||||
Sbjct: 77880 ccttgcacaatgtccttcgt 77899


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,318,422
Number of Sequences: 3902068
Number of extensions: 4318422
Number of successful extensions: 81003
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80805
Number of HSP's gapped (non-prelim): 198
length of query: 663
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 640
effective length of database: 17,143,297,704
effective search space: 10971710530560
effective search space used: 10971710530560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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