ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13m11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3 127 3e-29
2RL36A_ARATH (O80929) 60S ribosomal protein L36-1 125 8e-29
3RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2 125 1e-28
4RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36 106 6e-23
5RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36 97 4e-20
6RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36 97 4e-20
7RL36_BOVIN (Q3T171) 60S ribosomal protein L36 97 4e-20
8RL36_RAT (P39032) 60S ribosomal protein L36 95 2e-19
9RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B) 91 2e-18
10RL36_DAUCA (P52866) 60S ribosomal protein L36 91 2e-18
11RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A 89 8e-18
12RL36_MOUSE (P47964) 60S ribosomal protein L36 89 1e-17
13RL36_CAEEL (P49181) 60S ribosomal protein L36 89 1e-17
14RL36B_SCHPO (O94658) 60S ribosomal protein L36-B 88 2e-17
15RL36_CANAL (P47834) 60S ribosomal protein L36 (L39) 82 1e-15
16RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36) 79 1e-14
17RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39) 75 1e-13
18RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39) 75 1e-13
19ORN_PSESM (Q87VI6) Oligoribonuclease (EC 3.1.-.-) 32 1.1
20RS6_ICTPU (Q90YR8) 40S ribosomal protein S6 31 2.5
21MRGX2_BUNHO (Q4QXU6) Mas-related G-protein coupled receptor memb... 31 3.3
22ORN_PASMU (P57885) Oligoribonuclease (EC 3.1.-.-) 31 3.3
23SRP54_AQUAE (O67615) Signal recognition particle protein (Fifty-... 30 4.3
24ORN_MANSM (Q65SE1) Oligoribonuclease (EC 3.1.-.-) 30 4.3
25MRGX2_PANTR (Q4QXX9) Mas-related G-protein coupled receptor memb... 30 4.3
26MRGX2_GORGO (Q4QXU0) Mas-related G-protein coupled receptor memb... 30 4.3
27MRGX2_TRAFR (Q4QXU4) Mas-related G-protein coupled receptor memb... 29 9.7
28MRGX2_PYGBI (Q4QXU2) Mas-related G-protein coupled receptor memb... 29 9.7

>RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3|
          Length = 108

 Score =  127 bits (318), Expect = 3e-29
 Identities = 64/77 (83%), Positives = 71/77 (92%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           ++RKGK +KR  F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+K
Sbjct: 26  NNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRK 85

Query: 435 REEMSSVLRKMRSAGTG 385
           REEMSSVLRKMRS G G
Sbjct: 86  REEMSSVLRKMRSGGAG 102



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>RL36A_ARATH (O80929) 60S ribosomal protein L36-1|
          Length = 113

 Score =  125 bits (315), Expect = 8e-29
 Identities = 64/75 (85%), Positives = 68/75 (90%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           + RKGK +KR  F+R LIREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+K
Sbjct: 30  NSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRK 89

Query: 435 REEMSSVLRKMRSAG 391
           REEMSSVLRKMRS G
Sbjct: 90  REEMSSVLRKMRSLG 104



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>RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2|
          Length = 112

 Score =  125 bits (314), Expect = 1e-28
 Identities = 64/75 (85%), Positives = 69/75 (92%)
 Frame = -3

Query: 609 RKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 430
           RKGK +KR  F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KRE
Sbjct: 32  RKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 91

Query: 429 EMSSVLRKMRSAGTG 385
           EMSSVLRKMRS G G
Sbjct: 92  EMSSVLRKMRSGGGG 106



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>RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36|
          Length = 101

 Score =  106 bits (264), Expect = 6e-23
 Identities = 53/77 (68%), Positives = 65/77 (84%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           S RKG  ++RV  VR+++REVAG+APYE+R+ ELLKVGKDKRALK+ KRKLGTH R KKK
Sbjct: 24  SRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKK 83

Query: 435 REEMSSVLRKMRSAGTG 385
           REEM+ VLRKM++A  G
Sbjct: 84  REEMAGVLRKMQAASKG 100



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>RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36|
          Length = 104

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 48/74 (64%), Positives = 58/74 (78%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           S R+G+ TK   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+K
Sbjct: 26  SRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRK 85

Query: 435 REEMSSVLRKMRSA 394
           REE+S+VL  MR A
Sbjct: 86  REELSNVLAAMRKA 99



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>RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36|
          Length = 104

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 48/74 (64%), Positives = 58/74 (78%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           S R+G+ TK   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+K
Sbjct: 26  SRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRK 85

Query: 435 REEMSSVLRKMRSA 394
           REE+S+VL  MR A
Sbjct: 86  REELSNVLAAMRKA 99



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>RL36_BOVIN (Q3T171) 60S ribosomal protein L36|
          Length = 104

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 48/74 (64%), Positives = 58/74 (78%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           S R+G+ TK   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+K
Sbjct: 26  SRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRK 85

Query: 435 REEMSSVLRKMRSA 394
           REE+S+VL  MR A
Sbjct: 86  REELSNVLAAMRKA 99



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>RL36_RAT (P39032) 60S ribosomal protein L36|
          Length = 104

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 47/74 (63%), Positives = 57/74 (77%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           S R+G+ TK   FVR +IREV  FAPYE+R  ELLKV KDKRALK  K+++GTH RAK+K
Sbjct: 26  SRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRK 85

Query: 435 REEMSSVLRKMRSA 394
           REE+S+VL  MR A
Sbjct: 86  REELSNVLAAMRKA 99



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>RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B)|
          Length = 115

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 44/69 (63%), Positives = 54/69 (78%)
 Frame = -3

Query: 594 TKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSV 415
           T+   F+R L+REV G APYEKR  ELLKV KDKRALK  KR+LGTH RAK+KREE+S++
Sbjct: 44  TRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNI 103

Query: 414 LRKMRSAGT 388
           L ++R A T
Sbjct: 104 LTQLRKAQT 112



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>RL36_DAUCA (P52866) 60S ribosomal protein L36|
          Length = 106

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 46/62 (74%), Positives = 52/62 (83%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           SDRKGK +KR HFVR+LIREVAGF PYEKRITELLKVGKDKRALKV + K+G H +  K+
Sbjct: 30  SDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKE 88

Query: 435 RE 430
            E
Sbjct: 89  EE 90



 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = -2

Query: 475 EAKVGHPQEGQEEERGDVQCPQEDEICWYW 386
           + KVGH QE +EEERGDVQC   DE  W+W
Sbjct: 77  QEKVGHSQESKEEERGDVQCSPPDE-GWWW 105



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>RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A|
          Length = 99

 Score = 89.4 bits (220), Expect = 8e-18
 Identities = 44/74 (59%), Positives = 60/74 (81%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           S RKG+ +KR  FVRS++REVAGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK K
Sbjct: 25  SRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGK 84

Query: 435 REEMSSVLRKMRSA 394
            EE++SV++  R A
Sbjct: 85  IEELTSVIQSSRLA 98



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>RL36_MOUSE (P47964) 60S ribosomal protein L36|
          Length = 104

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 44/74 (59%), Positives = 54/74 (72%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           S R+ + T    FVR +IREV GFAPYE+R  ELLKV K KRALK  K+++GTH RAK+K
Sbjct: 26  SRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKRALKFIKKRVGTHIRAKRK 85

Query: 435 REEMSSVLRKMRSA 394
           REE+S+VL  M  A
Sbjct: 86  REELSNVLAAMEEA 99



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>RL36_CAEEL (P49181) 60S ribosomal protein L36|
          Length = 103

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 39/71 (54%), Positives = 54/71 (76%)
 Frame = -3

Query: 606 KGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 427
           KG  +K+   VR L+RE+ GFAPYE+R+ E+L++ KDKRALK  KR++GTH+RAK KREE
Sbjct: 31  KGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREE 90

Query: 426 MSSVLRKMRSA 394
           + +V+   R A
Sbjct: 91  LQNVIIAQRKA 101



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>RL36B_SCHPO (O94658) 60S ribosomal protein L36-B|
          Length = 99

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 44/74 (59%), Positives = 59/74 (79%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           S RKG  +KR  FVRS++REVAGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK K
Sbjct: 25  SRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGK 84

Query: 435 REEMSSVLRKMRSA 394
            EE++SV++  R A
Sbjct: 85  IEELTSVIQSSRLA 98



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>RL36_CANAL (P47834) 60S ribosomal protein L36 (L39)|
          Length = 99

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 39/72 (54%), Positives = 56/72 (77%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           S RKG  ++R  FVRS+++EVAG APYE+R+ EL++   +KRA K+AK++LGTHKRA +K
Sbjct: 26  SYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNAGEKRAKKLAKKRLGTHKRALRK 85

Query: 435 REEMSSVLRKMR 400
            EEM+ V+ + R
Sbjct: 86  VEEMTQVIAESR 97



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>RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36)|
          Length = 105

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 39/74 (52%), Positives = 54/74 (72%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           S  KG  +KR  FVR +++EVAG APYE+R+ ELL+  KDKRA K+AK++LGT  RAK+K
Sbjct: 31  SRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRARKLAKKRLGTFGRAKRK 90

Query: 435 REEMSSVLRKMRSA 394
            +E+  V+ + R A
Sbjct: 91  VDELQRVIAESRRA 104



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>RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39)|
          Length = 99

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 35/72 (48%), Positives = 53/72 (73%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           S +KG  + R  FVRSL+RE+AG +PYE+R+ +L++   +KRA KVAK++LG+  RAK K
Sbjct: 26  SYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAK 85

Query: 435 REEMSSVLRKMR 400
            EEM++++   R
Sbjct: 86  VEEMNNIIAASR 97



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>RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39)|
          Length = 99

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 35/72 (48%), Positives = 53/72 (73%)
 Frame = -3

Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436
           S +KG  + R  FVRSL+RE+AG +PYE+R+ +L++   +KRA KVAK++LG+  RAK K
Sbjct: 26  SYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAK 85

Query: 435 REEMSSVLRKMR 400
            EEM++++   R
Sbjct: 86  VEEMNNIIAASR 97



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>ORN_PSESM (Q87VI6) Oligoribonuclease (EC 3.1.-.-)|
          Length = 178

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 368 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNFRFATFRARLSLPTLRSSVIRFSY 538
           + +  +P   +    R LD+S+L  LA  W P  +F      L+L  +R S+    +
Sbjct: 114 FLYRHMPALENYFHYRNLDVSTLKELAARWAPELKFKKGSTHLALDDIRESIAELRF 170



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>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6|
          Length = 249

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 543 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS 421
           A Y K + + LK  K+KR  K+AKR+  +  RA + + E S
Sbjct: 207 AEYAKLLAKRLKEAKEKRQEKIAKRRRLSSLRASQSKSESS 247



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>MRGX2_BUNHO (Q4QXU6) Mas-related G-protein coupled receptor member X2|
          Length = 329

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = -3

Query: 237 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVVNF 100
           C+IFD +  AWL   F       L LL   L  S G+    L+LTI L V+ F
Sbjct: 180 CQIFDFITAAWLIFLFVVLCASSLALLVRILCGSRGLPLTRLYLTILLTVLVF 232



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>ORN_PASMU (P57885) Oligoribonuclease (EC 3.1.-.-)|
          Length = 184

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 368 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSVIRFSY 538
           + F  +P  AD    R LD+S+L  LA  W P+    F      L+L  +R S+   +Y
Sbjct: 115 FLFKYMPELADYFHYRHLDVSTLKELASRWKPDVLKGFTKKNTHLALDDIRESIAELAY 173



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>SRP54_AQUAE (O67615) Signal recognition particle protein (Fifty-four homolog)|
          Length = 454

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -3

Query: 555 VAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAG 391
           +    P E+R  +++ + + KR  + +   +    +  K+ EEM  ++RK++ AG
Sbjct: 371 INSMTPEERRNPKIINMSRKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKLQKAG 425



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>ORN_MANSM (Q65SE1) Oligoribonuclease (EC 3.1.-.-)|
          Length = 186

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 368 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSVIRFSY 538
           + F  +P  AD    R LD+S+L  LA  W P     F      L+L  +R S+   +Y
Sbjct: 115 FLFKYMPELADYFHYRHLDVSTLKELARRWKPELLNGFEKKNTHLALDDIRESIAELAY 173



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>MRGX2_PANTR (Q4QXX9) Mas-related G-protein coupled receptor member X2|
          Length = 329

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = -3

Query: 237 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVVNF 100
           C+ FDL+  AWL   F       L LL   L  S G+    L+LTI L V+ F
Sbjct: 179 CQTFDLITAAWLIFLFMVLCGSSLALLVRILCGSRGLPLTRLYLTILLTVLVF 231



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>MRGX2_GORGO (Q4QXU0) Mas-related G-protein coupled receptor member X2|
          Length = 329

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = -3

Query: 237 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVVNF 100
           C+ FDL+  AWL   F       L LL   L  S G+    L+LTI L V+ F
Sbjct: 179 CQTFDLITAAWLIFLFMVLCGSSLALLVRILCGSRGLPLTRLYLTILLTVLVF 231



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>MRGX2_TRAFR (Q4QXU4) Mas-related G-protein coupled receptor member X2|
          Length = 330

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -3

Query: 237 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVVNF 100
           C+ FD +  AWL   F       L LL   L  S G+    L+LTI L V+ F
Sbjct: 180 CQTFDFITAAWLMFLFVVLCGSSLALLVRILCGSRGLPLTRLYLTILLTVLIF 232



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>MRGX2_PYGBI (Q4QXU2) Mas-related G-protein coupled receptor member X2|
          Length = 330

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -3

Query: 237 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVVNF 100
           C+ FD +  AWL   F       L LL   L  S G+    L+LTI L V+ F
Sbjct: 180 CQTFDFITAAWLMFLFVVLCGSSLALLVRILCGSQGLPLTRLYLTILLTVLIF 232


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,235,439
Number of Sequences: 219361
Number of extensions: 1778192
Number of successful extensions: 5455
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 5246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5446
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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