| Clone Name | rbags13m11 |
|---|---|
| Clone Library Name | barley_pub |
>RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3| Length = 108 Score = 127 bits (318), Expect = 3e-29 Identities = 64/77 (83%), Positives = 71/77 (92%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 ++RKGK +KR F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+K Sbjct: 26 NNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRK 85 Query: 435 REEMSSVLRKMRSAGTG 385 REEMSSVLRKMRS G G Sbjct: 86 REEMSSVLRKMRSGGAG 102
>RL36A_ARATH (O80929) 60S ribosomal protein L36-1| Length = 113 Score = 125 bits (315), Expect = 8e-29 Identities = 64/75 (85%), Positives = 68/75 (90%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 + RKGK +KR F+R LIREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+K Sbjct: 30 NSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRK 89 Query: 435 REEMSSVLRKMRSAG 391 REEMSSVLRKMRS G Sbjct: 90 REEMSSVLRKMRSLG 104
>RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2| Length = 112 Score = 125 bits (314), Expect = 1e-28 Identities = 64/75 (85%), Positives = 69/75 (92%) Frame = -3 Query: 609 RKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 430 RKGK +KR F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KRE Sbjct: 32 RKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKRE 91 Query: 429 EMSSVLRKMRSAGTG 385 EMSSVLRKMRS G G Sbjct: 92 EMSSVLRKMRSGGGG 106
>RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36| Length = 101 Score = 106 bits (264), Expect = 6e-23 Identities = 53/77 (68%), Positives = 65/77 (84%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 S RKG ++RV VR+++REVAG+APYE+R+ ELLKVGKDKRALK+ KRKLGTH R KKK Sbjct: 24 SRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKK 83 Query: 435 REEMSSVLRKMRSAGTG 385 REEM+ VLRKM++A G Sbjct: 84 REEMAGVLRKMQAASKG 100
>RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36| Length = 104 Score = 97.1 bits (240), Expect = 4e-20 Identities = 48/74 (64%), Positives = 58/74 (78%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 S R+G+ TK FVR +IREV GFAPYE+R ELLKV KDKRALK K+++GTH RAK+K Sbjct: 26 SRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRK 85 Query: 435 REEMSSVLRKMRSA 394 REE+S+VL MR A Sbjct: 86 REELSNVLAAMRKA 99
>RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36| Length = 104 Score = 97.1 bits (240), Expect = 4e-20 Identities = 48/74 (64%), Positives = 58/74 (78%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 S R+G+ TK FVR +IREV GFAPYE+R ELLKV KDKRALK K+++GTH RAK+K Sbjct: 26 SRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRK 85 Query: 435 REEMSSVLRKMRSA 394 REE+S+VL MR A Sbjct: 86 REELSNVLAAMRKA 99
>RL36_BOVIN (Q3T171) 60S ribosomal protein L36| Length = 104 Score = 97.1 bits (240), Expect = 4e-20 Identities = 48/74 (64%), Positives = 58/74 (78%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 S R+G+ TK FVR +IREV GFAPYE+R ELLKV KDKRALK K+++GTH RAK+K Sbjct: 26 SRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRK 85 Query: 435 REEMSSVLRKMRSA 394 REE+S+VL MR A Sbjct: 86 REELSNVLAAMRKA 99
>RL36_RAT (P39032) 60S ribosomal protein L36| Length = 104 Score = 94.7 bits (234), Expect = 2e-19 Identities = 47/74 (63%), Positives = 57/74 (77%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 S R+G+ TK FVR +IREV FAPYE+R ELLKV KDKRALK K+++GTH RAK+K Sbjct: 26 SRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRK 85 Query: 435 REEMSSVLRKMRSA 394 REE+S+VL MR A Sbjct: 86 REELSNVLAAMRKA 99
>RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B)| Length = 115 Score = 91.3 bits (225), Expect = 2e-18 Identities = 44/69 (63%), Positives = 54/69 (78%) Frame = -3 Query: 594 TKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSV 415 T+ F+R L+REV G APYEKR ELLKV KDKRALK KR+LGTH RAK+KREE+S++ Sbjct: 44 TRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNI 103 Query: 414 LRKMRSAGT 388 L ++R A T Sbjct: 104 LTQLRKAQT 112
>RL36_DAUCA (P52866) 60S ribosomal protein L36| Length = 106 Score = 91.3 bits (225), Expect = 2e-18 Identities = 46/62 (74%), Positives = 52/62 (83%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 SDRKGK +KR HFVR+LIREVAGF PYEKRITELLKVGKDKRALKV + K+G H + K+ Sbjct: 30 SDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKE 88 Query: 435 RE 430 E Sbjct: 89 EE 90 Score = 43.5 bits (101), Expect = 5e-04 Identities = 19/30 (63%), Positives = 22/30 (73%) Frame = -2 Query: 475 EAKVGHPQEGQEEERGDVQCPQEDEICWYW 386 + KVGH QE +EEERGDVQC DE W+W Sbjct: 77 QEKVGHSQESKEEERGDVQCSPPDE-GWWW 105
>RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A| Length = 99 Score = 89.4 bits (220), Expect = 8e-18 Identities = 44/74 (59%), Positives = 60/74 (81%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 S RKG+ +KR FVRS++REVAGFAPYE+R+ EL++ +DKRA K+AK++LGT KRAK K Sbjct: 25 SRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGK 84 Query: 435 REEMSSVLRKMRSA 394 EE++SV++ R A Sbjct: 85 IEELTSVIQSSRLA 98
>RL36_MOUSE (P47964) 60S ribosomal protein L36| Length = 104 Score = 88.6 bits (218), Expect = 1e-17 Identities = 44/74 (59%), Positives = 54/74 (72%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 S R+ + T FVR +IREV GFAPYE+R ELLKV K KRALK K+++GTH RAK+K Sbjct: 26 SRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKRALKFIKKRVGTHIRAKRK 85 Query: 435 REEMSSVLRKMRSA 394 REE+S+VL M A Sbjct: 86 REELSNVLAAMEEA 99
>RL36_CAEEL (P49181) 60S ribosomal protein L36| Length = 103 Score = 88.6 bits (218), Expect = 1e-17 Identities = 39/71 (54%), Positives = 54/71 (76%) Frame = -3 Query: 606 KGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 427 KG +K+ VR L+RE+ GFAPYE+R+ E+L++ KDKRALK KR++GTH+RAK KREE Sbjct: 31 KGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREE 90 Query: 426 MSSVLRKMRSA 394 + +V+ R A Sbjct: 91 LQNVIIAQRKA 101
>RL36B_SCHPO (O94658) 60S ribosomal protein L36-B| Length = 99 Score = 88.2 bits (217), Expect = 2e-17 Identities = 44/74 (59%), Positives = 59/74 (79%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 S RKG +KR FVRS++REVAGFAPYE+R+ EL++ +DKRA K+AK++LGT KRAK K Sbjct: 25 SRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGK 84 Query: 435 REEMSSVLRKMRSA 394 EE++SV++ R A Sbjct: 85 IEELTSVIQSSRLA 98
>RL36_CANAL (P47834) 60S ribosomal protein L36 (L39)| Length = 99 Score = 82.4 bits (202), Expect = 1e-15 Identities = 39/72 (54%), Positives = 56/72 (77%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 S RKG ++R FVRS+++EVAG APYE+R+ EL++ +KRA K+AK++LGTHKRA +K Sbjct: 26 SYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNAGEKRAKKLAKKRLGTHKRALRK 85 Query: 435 REEMSSVLRKMR 400 EEM+ V+ + R Sbjct: 86 VEEMTQVIAESR 97
>RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36)| Length = 105 Score = 79.0 bits (193), Expect = 1e-14 Identities = 39/74 (52%), Positives = 54/74 (72%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 S KG +KR FVR +++EVAG APYE+R+ ELL+ KDKRA K+AK++LGT RAK+K Sbjct: 31 SRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRARKLAKKRLGTFGRAKRK 90 Query: 435 REEMSSVLRKMRSA 394 +E+ V+ + R A Sbjct: 91 VDELQRVIAESRRA 104
>RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39)| Length = 99 Score = 75.5 bits (184), Expect = 1e-13 Identities = 35/72 (48%), Positives = 53/72 (73%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 S +KG + R FVRSL+RE+AG +PYE+R+ +L++ +KRA KVAK++LG+ RAK K Sbjct: 26 SYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAK 85 Query: 435 REEMSSVLRKMR 400 EEM++++ R Sbjct: 86 VEEMNNIIAASR 97
>RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39)| Length = 99 Score = 75.5 bits (184), Expect = 1e-13 Identities = 35/72 (48%), Positives = 53/72 (73%) Frame = -3 Query: 615 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 436 S +KG + R FVRSL+RE+AG +PYE+R+ +L++ +KRA KVAK++LG+ RAK K Sbjct: 26 SYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAK 85 Query: 435 REEMSSVLRKMR 400 EEM++++ R Sbjct: 86 VEEMNNIIAASR 97
>ORN_PSESM (Q87VI6) Oligoribonuclease (EC 3.1.-.-)| Length = 178 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = +2 Query: 368 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNFRFATFRARLSLPTLRSSVIRFSY 538 + + +P + R LD+S+L LA W P +F L+L +R S+ + Sbjct: 114 FLYRHMPALENYFHYRNLDVSTLKELAARWAPELKFKKGSTHLALDDIRESIAELRF 170
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 31.2 bits (69), Expect = 2.5 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = -3 Query: 543 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS 421 A Y K + + LK K+KR K+AKR+ + RA + + E S Sbjct: 207 AEYAKLLAKRLKEAKEKRQEKIAKRRRLSSLRASQSKSESS 247
>MRGX2_BUNHO (Q4QXU6) Mas-related G-protein coupled receptor member X2| Length = 329 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = -3 Query: 237 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVVNF 100 C+IFD + AWL F L LL L S G+ L+LTI L V+ F Sbjct: 180 CQIFDFITAAWLIFLFVVLCASSLALLVRILCGSRGLPLTRLYLTILLTVLVF 232
>ORN_PASMU (P57885) Oligoribonuclease (EC 3.1.-.-)| Length = 184 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 368 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSVIRFSY 538 + F +P AD R LD+S+L LA W P+ F L+L +R S+ +Y Sbjct: 115 FLFKYMPELADYFHYRHLDVSTLKELASRWKPDVLKGFTKKNTHLALDDIRESIAELAY 173
>SRP54_AQUAE (O67615) Signal recognition particle protein (Fifty-four homolog)| Length = 454 Score = 30.4 bits (67), Expect = 4.3 Identities = 13/55 (23%), Positives = 29/55 (52%) Frame = -3 Query: 555 VAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAG 391 + P E+R +++ + + KR + + + + K+ EEM ++RK++ AG Sbjct: 371 INSMTPEERRNPKIINMSRKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKLQKAG 425
>ORN_MANSM (Q65SE1) Oligoribonuclease (EC 3.1.-.-)| Length = 186 Score = 30.4 bits (67), Expect = 4.3 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = +2 Query: 368 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSVIRFSY 538 + F +P AD R LD+S+L LA W P F L+L +R S+ +Y Sbjct: 115 FLFKYMPELADYFHYRHLDVSTLKELARRWKPELLNGFEKKNTHLALDDIRESIAELAY 173
>MRGX2_PANTR (Q4QXX9) Mas-related G-protein coupled receptor member X2| Length = 329 Score = 30.4 bits (67), Expect = 4.3 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = -3 Query: 237 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVVNF 100 C+ FDL+ AWL F L LL L S G+ L+LTI L V+ F Sbjct: 179 CQTFDLITAAWLIFLFMVLCGSSLALLVRILCGSRGLPLTRLYLTILLTVLVF 231
>MRGX2_GORGO (Q4QXU0) Mas-related G-protein coupled receptor member X2| Length = 329 Score = 30.4 bits (67), Expect = 4.3 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = -3 Query: 237 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVVNF 100 C+ FDL+ AWL F L LL L S G+ L+LTI L V+ F Sbjct: 179 CQTFDLITAAWLIFLFMVLCGSSLALLVRILCGSRGLPLTRLYLTILLTVLVF 231
>MRGX2_TRAFR (Q4QXU4) Mas-related G-protein coupled receptor member X2| Length = 330 Score = 29.3 bits (64), Expect = 9.7 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -3 Query: 237 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVVNF 100 C+ FD + AWL F L LL L S G+ L+LTI L V+ F Sbjct: 180 CQTFDFITAAWLMFLFVVLCGSSLALLVRILCGSRGLPLTRLYLTILLTVLIF 232
>MRGX2_PYGBI (Q4QXU2) Mas-related G-protein coupled receptor member X2| Length = 330 Score = 29.3 bits (64), Expect = 9.7 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -3 Query: 237 CEIFDLLCKAWLSPCF-------LGLLFHYLLASCGIHCLWLWLTIGLRVVNF 100 C+ FD + AWL F L LL L S G+ L+LTI L V+ F Sbjct: 180 CQTFDFITAAWLMFLFVVLCGSSLALLVRILCGSQGLPLTRLYLTILLTVLIF 232 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,235,439 Number of Sequences: 219361 Number of extensions: 1778192 Number of successful extensions: 5455 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5246 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5446 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)