ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags14b09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL513143.3|CNS07EFO Human chromosome 14 DNA sequence BAC R-611H21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 155584 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 311 aactgtgctaaatgcactgataaatc 336 ||||||| |||||||||||||||||| Sbjct: 77175 aactgtgttaaatgcactgataaatc 77200
>emb|AL157690.7|CNS01RG2 Human chromosome 14 DNA sequence BAC R-565E24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163398 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 311 aactgtgctaaatgcactgataaatc 336 ||||||| |||||||||||||||||| Sbjct: 43567 aactgtgttaaatgcactgataaatc 43542
>gb|AC132274.3| Mus musculus BAC clone RP24-341I21 from chromosome 3, complete sequence Length = 172883 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 245 atcaagatgaagccacactcacagc 269 |||||||||||||||||| |||||| Sbjct: 78363 atcaagatgaagccacacacacagc 78339
>emb|CR721535.2|CNS0GJOL Tetraodon nigroviridis full-length cDNA Length = 1378 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 taaatgcactgataaatcga 338 |||||||||||||||||||| Sbjct: 797 taaatgcactgataaatcga 816
>gb|AC124120.5| Mus musculus chromosome 1, clone RP24-64M13, complete sequence Length = 242227 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 tacatgcatccatacatcacacat 90 ||||||||| |||||||||||||| Sbjct: 29317 tacatgcatacatacatcacacat 29340
>emb|AL160010.14| Human DNA sequence from clone RP11-146P20 on chromosome 10 Contains part of the gene for VPS10 domain receptor protein SORCS 1, complete sequence Length = 158724 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 231 tgaataatgctttgatcaagatgaagccacac 262 ||||||||||| |||| |||||||||||||| Sbjct: 5278 tgaataatgctgagatccagatgaagccacac 5247
>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66 Length = 198372 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ttgaaagttgaaaccttgtt 109 |||||||||||||||||||| Sbjct: 97493 ttgaaagttgaaaccttgtt 97474
>emb|AL035680.1|ATT24A18 Arabidopsis thaliana DNA chromosome 4, BAC clone T24A18, partial sequence (ESSA project) Length = 45980 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ttgaaagttgaaaccttgtt 109 |||||||||||||||||||| Sbjct: 13982 ttgaaagttgaaaccttgtt 13963
>emb|CR749769.6| Zebrafish DNA sequence from clone DKEY-215J3 in linkage group 17, complete sequence Length = 170993 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 tgctttgatcaagatgaagc 257 |||||||||||||||||||| Sbjct: 135729 tgctttgatcaagatgaagc 135748
>gb|AC091227.3| Drosophila melanogaster 3L BAC RP98-17F24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163514 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 gcaaagcttcaaatgaataa 237 |||||||||||||||||||| Sbjct: 67404 gcaaagcttcaaatgaataa 67385
>emb|BX539343.9| Zebrafish DNA sequence from clone DKEY-58K6 in linkage group 17, complete sequence Length = 191248 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 tgctttgatcaagatgaagc 257 |||||||||||||||||||| Sbjct: 39590 tgctttgatcaagatgaagc 39571
>gb|AC105313.3| Homo sapiens BAC clone RP11-30P21 from 4, complete sequence Length = 145240 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 caaaagaacagatgcatggaagac 194 |||| ||||||||||||||||||| Sbjct: 123644 caaatgaacagatgcatggaagac 123667
>gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54 of 83 of the complete sequence Length = 271869 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 gcaaagcttcaaatgaataa 237 |||||||||||||||||||| Sbjct: 73759 gcaaagcttcaaatgaataa 73740
>gb|AC113326.9| Mus musculus chromosome 1, clone RP23-454G7, complete sequence Length = 192734 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 tacatgcatccatacatcacacat 90 ||||||||| |||||||||||||| Sbjct: 7653 tacatgcatacatacatcacacat 7630 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,464,057 Number of Sequences: 3902068 Number of extensions: 2464057 Number of successful extensions: 49848 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49829 Number of HSP's gapped (non-prelim): 19 length of query: 371 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 349 effective length of database: 17,147,199,772 effective search space: 5984372720428 effective search space used: 5984372720428 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
