ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13m06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK103782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
2ref|NM_121864.2| Arabidopsis thaliana unknown protein AT5G18590 ... 68 2e-08
3ref|NM_180515.1| Arabidopsis thaliana unknown protein AT5G18590 ... 68 2e-08
4gb|AY118226.1| Arabidopsis thaliana RanGAP1 interacting protein ... 68 2e-08
5gb|AC120888.2| Oryza sativa (japonica cultivar-group) chromosome... 64 3e-07
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 64 3e-07
8gb|AC069328.1|AC069328 Genomic Sequence For Arabidopsis thaliana... 60 5e-06
9gb|AC051627.4|AC051627 Genomic Sequence For Arabidopsis thaliana... 60 5e-06
10dbj|AK100645.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
11gb|AY112635.1| Zea mays CL68462_1 mRNA sequence 52 0.001
12gb|AC182669.2| Populus trichocarpa clone Pop1-21I14, complete se... 46 0.077
13ref|NM_125999.1| Arabidopsis thaliana ATSAC1B/IBS2; phosphoinosi... 42 1.2
14gb|DQ447110.1| Arabidopsis thaliana clone pENTR221-At5g66020 pho... 42 1.2
15gb|AY227249.1| Arabidopsis thaliana SAC domain protein 6 (SAC6) ... 42 1.2
16gb|AF266458.1| Arabidopsis thaliana SAC1-like protein AtSAC1b mR... 42 1.2
17dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.2
18ref|XM_417189.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 40 4.8
19gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
20emb|CR388915.1| Gallus gallus finished cDNA, clone ChEST169k20 40 4.8
21dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
22gb|AC017111.4|AC017111 Homo sapiens BAC clone RP11-571G1 from 13... 40 4.8
23emb|BX842662.2| Mouse DNA sequence from clone RP24-156K24 on chr... 40 4.8
24dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
25emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in... 40 4.8
26emb|AL590007.5| Human DNA sequence from clone RP11-233D11 on chr... 40 4.8
27emb|AL450317.13| Mouse DNA sequence from clone RP23-467E4 on chr... 40 4.8

>dbj|AK103782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145H12, full
            insert sequence
          Length = 3299

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                        
Query: 291  tccattgactgcagcctttgcttcagatgaaacacttcaacctgcagctggaatgccctc 350
            |||||||  |||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 3059 tccattgtttgcagcctttgcttcagatggaacacttcaacctggagctggaaggccctc 3000

             
Query: 351  g 351
            |
Sbjct: 2999 g 2999



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>ref|NM_121864.2| Arabidopsis thaliana unknown protein AT5G18590 transcript variant
            AT5G18590.1 mRNA, complete cds
          Length = 3035

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 306  ctttgcttcagatgaaacacttcaacctgcagctggaa 343
            ||||||||||||||||||||||||||||||| ||||||
Sbjct: 2429 ctttgcttcagatgaaacacttcaacctgcaactggaa 2392



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>ref|NM_180515.1| Arabidopsis thaliana unknown protein AT5G18590 transcript variant
            AT5G18590.2 mRNA, complete cds
          Length = 3090

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 306  ctttgcttcagatgaaacacttcaacctgcagctggaa 343
            ||||||||||||||||||||||||||||||| ||||||
Sbjct: 2484 ctttgcttcagatgaaacacttcaacctgcaactggaa 2447



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>gb|AY118226.1| Arabidopsis thaliana RanGAP1 interacting protein mRNA, complete cds
          Length = 2127

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 306  ctttgcttcagatgaaacacttcaacctgcagctggaa 343
            ||||||||||||||||||||||||||||||| ||||||
Sbjct: 2072 ctttgcttcagatgaaacacttcaacctgcaactggaa 2035



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>gb|AC120888.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0485F09, complete sequence
          Length = 161276

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 291   tccattgactgcagcctttgcttcagatgaaacacttcaacctg 334
             |||||||  |||||||||||||||||||| ||||||||||||||
Sbjct: 44127 tccattgtttgcagcctttgcttcagatggaacacttcaacctg 44084



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 291      tccattgactgcagcctttgcttcagatgaaacacttcaacctg 334
                |||||||  |||||||||||||||||||| ||||||||||||||
Sbjct: 25437236 tccattgtttgcagcctttgcttcagatggaacacttcaacctg 25437193



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 291      tccattgactgcagcctttgcttcagatgaaacacttcaacctg 334
                |||||||  |||||||||||||||||||| ||||||||||||||
Sbjct: 25755906 tccattgtttgcagcctttgcttcagatggaacacttcaacctg 25755863



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>gb|AC069328.1|AC069328 Genomic Sequence For Arabidopsis thaliana Clone T28N17 From Chromosome
             V, complete sequence
          Length = 75593

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                           
Query: 306   ctttgcttcagatgaaacacttcaacctgc 335
             ||||||||||||||||||||||||||||||
Sbjct: 24739 ctttgcttcagatgaaacacttcaacctgc 24710



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>gb|AC051627.4|AC051627 Genomic Sequence For Arabidopsis thaliana Clone T1A4 From Chromosome V,
             complete sequence
          Length = 85746

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                           
Query: 306   ctttgcttcagatgaaacacttcaacctgc 335
             ||||||||||||||||||||||||||||||
Sbjct: 83778 ctttgcttcagatgaaacacttcaacctgc 83749



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>dbj|AK100645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110K24, full
            insert sequence
          Length = 2596

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 315  agatgaaacacttcaacctgcagctggaatgccctcg 351
            ||||| |||||||||||||| ||||||||||||||||
Sbjct: 2311 agatggaacacttcaacctggagctggaatgccctcg 2275



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>gb|AY112635.1| Zea mays CL68462_1 mRNA sequence
          Length = 344

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 309 tgcttcagatgaaacacttcaacctgcagctggaatgccc 348
           ||||| | |||||| ||||||||||| |||||||||||||
Sbjct: 258 tgcttnanatgaaagacttcaacctgaagctggaatgccc 297



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>gb|AC182669.2| Populus trichocarpa clone Pop1-21I14, complete sequence
          Length = 149597

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 306    ctttgcttcagatgaaacacttcaacctgca 336
              ||||| ||||||||||| |||||||||||||
Sbjct: 144667 ctttgtttcagatgaaaaacttcaacctgca 144697



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>ref|NM_125999.1| Arabidopsis thaliana ATSAC1B/IBS2; phosphoinositide 5-phosphatase
            AT5G66020 (ATSAC1B/IBS2) mRNA, complete cds
          Length = 1650

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 337  gctggaatgccctcgcacgct 357
            |||||||||||||||||||||
Sbjct: 1388 gctggaatgccctcgcacgct 1408



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>gb|DQ447110.1| Arabidopsis thaliana clone pENTR221-At5g66020 phosphoinositide
            phosphatase family protein (At5g66020) mRNA, complete cds
          Length = 1792

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 337  gctggaatgccctcgcacgct 357
            |||||||||||||||||||||
Sbjct: 1520 gctggaatgccctcgcacgct 1540



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>gb|AY227249.1| Arabidopsis thaliana SAC domain protein 6 (SAC6) mRNA, complete cds
          Length = 1782

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 337  gctggaatgccctcgcacgct 357
            |||||||||||||||||||||
Sbjct: 1436 gctggaatgccctcgcacgct 1456



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>gb|AF266458.1| Arabidopsis thaliana SAC1-like protein AtSAC1b mRNA, complete cds
          Length = 1782

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 337  gctggaatgccctcgcacgct 357
            |||||||||||||||||||||
Sbjct: 1436 gctggaatgccctcgcacgct 1456



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>dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2A18
          Length = 79899

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 337   gctggaatgccctcgcacgct 357
             |||||||||||||||||||||
Sbjct: 18281 gctggaatgccctcgcacgct 18261



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>ref|XM_417189.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 2810485I05
            (LOC418994), mRNA
          Length = 1991

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  ttcagatgaaacacttcaac 331
            ||||||||||||||||||||
Sbjct: 1409 ttcagatgaaacacttcaac 1428



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>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBa0065A15, complete sequence
          Length = 168806

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 10     ctggcctangatgaatcgcaaca 32
              |||||||| ||||||||||||||
Sbjct: 102674 ctggcctaagatgaatcgcaaca 102652



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>emb|CR388915.1| Gallus gallus finished cDNA, clone ChEST169k20
          Length = 875

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 ttcagatgaaacacttcaac 331
           ||||||||||||||||||||
Sbjct: 292 ttcagatgaaacacttcaac 311



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 10       ctggcctangatgaatcgcaaca 32
                |||||||| ||||||||||||||
Sbjct: 19619599 ctggcctaagatgaatcgcaaca 19619577



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>gb|AC017111.4|AC017111 Homo sapiens BAC clone RP11-571G1 from 13, complete sequence
          Length = 193787

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   aaaataggcatgataacagt 187
             ||||||||||||||||||||
Sbjct: 32464 aaaataggcatgataacagt 32445



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>emb|BX842662.2| Mouse DNA sequence from clone RP24-156K24 on chromosome 2, complete
             sequence
          Length = 73156

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   agcatgatagccaatcaaac 145
             ||||||||||||||||||||
Sbjct: 54654 agcatgatagccaatcaaac 54673



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>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1399_D07, complete sequence
          Length = 65000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 10    ctggcctangatgaatcgcaaca 32
             |||||||| ||||||||||||||
Sbjct: 29081 ctggcctaagatgaatcgcaaca 29059



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>emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in linkage group 14,
             complete sequence
          Length = 179663

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   gacagtccatccattgactg 301
             ||||||||||||||||||||
Sbjct: 58871 gacagtccatccattgactg 58890



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>emb|AL590007.5| Human DNA sequence from clone RP11-233D11 on chromosome 13 Contains the
             5' end of the gene for a novel calx-beta domain containing
             protein similar to sea urchin ECM3 and a CpG island,
             complete sequence
          Length = 148828

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   aaaataggcatgataacagt 187
             ||||||||||||||||||||
Sbjct: 93754 aaaataggcatgataacagt 93773



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>emb|AL450317.13| Mouse DNA sequence from clone RP23-467E4 on chromosome 9, complete
             sequence
          Length = 184651

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   cagatgacagtccatccatt 296
             ||||||||||||||||||||
Sbjct: 22922 cagatgacagtccatccatt 22941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,906,002
Number of Sequences: 3902068
Number of extensions: 2906002
Number of successful extensions: 45940
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45885
Number of HSP's gapped (non-prelim): 55
length of query: 359
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 337
effective length of database: 17,147,199,772
effective search space: 5778606323164
effective search space used: 5778606323164
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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