| Clone Name | rbags13m06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145H12, full insert sequence Length = 3299 Score = 81.8 bits (41), Expect = 1e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 291 tccattgactgcagcctttgcttcagatgaaacacttcaacctgcagctggaatgccctc 350 ||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||| Sbjct: 3059 tccattgtttgcagcctttgcttcagatggaacacttcaacctggagctggaaggccctc 3000 Query: 351 g 351 | Sbjct: 2999 g 2999
>ref|NM_121864.2| Arabidopsis thaliana unknown protein AT5G18590 transcript variant AT5G18590.1 mRNA, complete cds Length = 3035 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 306 ctttgcttcagatgaaacacttcaacctgcagctggaa 343 ||||||||||||||||||||||||||||||| |||||| Sbjct: 2429 ctttgcttcagatgaaacacttcaacctgcaactggaa 2392
>ref|NM_180515.1| Arabidopsis thaliana unknown protein AT5G18590 transcript variant AT5G18590.2 mRNA, complete cds Length = 3090 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 306 ctttgcttcagatgaaacacttcaacctgcagctggaa 343 ||||||||||||||||||||||||||||||| |||||| Sbjct: 2484 ctttgcttcagatgaaacacttcaacctgcaactggaa 2447
>gb|AY118226.1| Arabidopsis thaliana RanGAP1 interacting protein mRNA, complete cds Length = 2127 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 306 ctttgcttcagatgaaacacttcaacctgcagctggaa 343 ||||||||||||||||||||||||||||||| |||||| Sbjct: 2072 ctttgcttcagatgaaacacttcaacctgcaactggaa 2035
>gb|AC120888.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0485F09, complete sequence Length = 161276 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 291 tccattgactgcagcctttgcttcagatgaaacacttcaacctg 334 ||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 44127 tccattgtttgcagcctttgcttcagatggaacacttcaacctg 44084
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 291 tccattgactgcagcctttgcttcagatgaaacacttcaacctg 334 ||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 25437236 tccattgtttgcagcctttgcttcagatggaacacttcaacctg 25437193
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 63.9 bits (32), Expect = 3e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 291 tccattgactgcagcctttgcttcagatgaaacacttcaacctg 334 ||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 25755906 tccattgtttgcagcctttgcttcagatggaacacttcaacctg 25755863
>gb|AC069328.1|AC069328 Genomic Sequence For Arabidopsis thaliana Clone T28N17 From Chromosome V, complete sequence Length = 75593 Score = 60.0 bits (30), Expect = 5e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 306 ctttgcttcagatgaaacacttcaacctgc 335 |||||||||||||||||||||||||||||| Sbjct: 24739 ctttgcttcagatgaaacacttcaacctgc 24710
>gb|AC051627.4|AC051627 Genomic Sequence For Arabidopsis thaliana Clone T1A4 From Chromosome V, complete sequence Length = 85746 Score = 60.0 bits (30), Expect = 5e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 306 ctttgcttcagatgaaacacttcaacctgc 335 |||||||||||||||||||||||||||||| Sbjct: 83778 ctttgcttcagatgaaacacttcaacctgc 83749
>dbj|AK100645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110K24, full insert sequence Length = 2596 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 315 agatgaaacacttcaacctgcagctggaatgccctcg 351 ||||| |||||||||||||| |||||||||||||||| Sbjct: 2311 agatggaacacttcaacctggagctggaatgccctcg 2275
>gb|AY112635.1| Zea mays CL68462_1 mRNA sequence Length = 344 Score = 52.0 bits (26), Expect = 0.001 Identities = 36/40 (90%) Strand = Plus / Plus Query: 309 tgcttcagatgaaacacttcaacctgcagctggaatgccc 348 ||||| | |||||| ||||||||||| ||||||||||||| Sbjct: 258 tgcttnanatgaaagacttcaacctgaagctggaatgccc 297
>gb|AC182669.2| Populus trichocarpa clone Pop1-21I14, complete sequence Length = 149597 Score = 46.1 bits (23), Expect = 0.077 Identities = 29/31 (93%) Strand = Plus / Plus Query: 306 ctttgcttcagatgaaacacttcaacctgca 336 ||||| ||||||||||| ||||||||||||| Sbjct: 144667 ctttgtttcagatgaaaaacttcaacctgca 144697
>ref|NM_125999.1| Arabidopsis thaliana ATSAC1B/IBS2; phosphoinositide 5-phosphatase AT5G66020 (ATSAC1B/IBS2) mRNA, complete cds Length = 1650 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 gctggaatgccctcgcacgct 357 ||||||||||||||||||||| Sbjct: 1388 gctggaatgccctcgcacgct 1408
>gb|DQ447110.1| Arabidopsis thaliana clone pENTR221-At5g66020 phosphoinositide phosphatase family protein (At5g66020) mRNA, complete cds Length = 1792 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 gctggaatgccctcgcacgct 357 ||||||||||||||||||||| Sbjct: 1520 gctggaatgccctcgcacgct 1540
>gb|AY227249.1| Arabidopsis thaliana SAC domain protein 6 (SAC6) mRNA, complete cds Length = 1782 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 gctggaatgccctcgcacgct 357 ||||||||||||||||||||| Sbjct: 1436 gctggaatgccctcgcacgct 1456
>gb|AF266458.1| Arabidopsis thaliana SAC1-like protein AtSAC1b mRNA, complete cds Length = 1782 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 gctggaatgccctcgcacgct 357 ||||||||||||||||||||| Sbjct: 1436 gctggaatgccctcgcacgct 1456
>dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2A18 Length = 79899 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 gctggaatgccctcgcacgct 357 ||||||||||||||||||||| Sbjct: 18281 gctggaatgccctcgcacgct 18261
>ref|XM_417189.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 2810485I05 (LOC418994), mRNA Length = 1991 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 ttcagatgaaacacttcaac 331 |||||||||||||||||||| Sbjct: 1409 ttcagatgaaacacttcaac 1428
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0065A15, complete sequence Length = 168806 Score = 40.1 bits (20), Expect = 4.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 10 ctggcctangatgaatcgcaaca 32 |||||||| |||||||||||||| Sbjct: 102674 ctggcctaagatgaatcgcaaca 102652
>emb|CR388915.1| Gallus gallus finished cDNA, clone ChEST169k20 Length = 875 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 ttcagatgaaacacttcaac 331 |||||||||||||||||||| Sbjct: 292 ttcagatgaaacacttcaac 311
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 10 ctggcctangatgaatcgcaaca 32 |||||||| |||||||||||||| Sbjct: 19619599 ctggcctaagatgaatcgcaaca 19619577
>gb|AC017111.4|AC017111 Homo sapiens BAC clone RP11-571G1 from 13, complete sequence Length = 193787 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 aaaataggcatgataacagt 187 |||||||||||||||||||| Sbjct: 32464 aaaataggcatgataacagt 32445
>emb|BX842662.2| Mouse DNA sequence from clone RP24-156K24 on chromosome 2, complete sequence Length = 73156 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 agcatgatagccaatcaaac 145 |||||||||||||||||||| Sbjct: 54654 agcatgatagccaatcaaac 54673
>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1399_D07, complete sequence Length = 65000 Score = 40.1 bits (20), Expect = 4.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 10 ctggcctangatgaatcgcaaca 32 |||||||| |||||||||||||| Sbjct: 29081 ctggcctaagatgaatcgcaaca 29059
>emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in linkage group 14, complete sequence Length = 179663 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gacagtccatccattgactg 301 |||||||||||||||||||| Sbjct: 58871 gacagtccatccattgactg 58890
>emb|AL590007.5| Human DNA sequence from clone RP11-233D11 on chromosome 13 Contains the 5' end of the gene for a novel calx-beta domain containing protein similar to sea urchin ECM3 and a CpG island, complete sequence Length = 148828 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 aaaataggcatgataacagt 187 |||||||||||||||||||| Sbjct: 93754 aaaataggcatgataacagt 93773
>emb|AL450317.13| Mouse DNA sequence from clone RP23-467E4 on chromosome 9, complete sequence Length = 184651 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cagatgacagtccatccatt 296 |||||||||||||||||||| Sbjct: 22922 cagatgacagtccatccatt 22941 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,906,002 Number of Sequences: 3902068 Number of extensions: 2906002 Number of successful extensions: 45940 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45885 Number of HSP's gapped (non-prelim): 55 length of query: 359 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 337 effective length of database: 17,147,199,772 effective search space: 5778606323164 effective search space used: 5778606323164 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)