Clone Information

BLAST Search Result

Clone Name	rbags14b05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MPPB_ARATH (Q42290) Probable mitochondrial-processing peptidase ...	126	5e-29
2	MPPB_MOUSE (Q9CXT8) Mitochondrial-processing peptidase beta subu...	98	1e-20
3	MPPB_HUMAN (O75439) Mitochondrial-processing peptidase beta subu...	96	7e-20
4	MPPB_BOVIN (Q3SZ71) Mitochondrial-processing peptidase beta subu...	93	4e-19
5	MPPB_RAT (Q03346) Mitochondrial-processing peptidase beta subuni...	93	6e-19
6	MPPB_PONPY (Q5REK3) Mitochondrial-processing peptidase beta subu...	92	1e-18
7	MPPB_BLAEM (Q00302) Mitochondrial-processing peptidase beta subu...	91	2e-18
8	UQCR1_HUMAN (P31930) Ubiquinol-cytochrome-c reductase complex co...	87	2e-17
9	UQCR1_BOVIN (P31800) Ubiquinol-cytochrome-c reductase complex co...	85	2e-16
10	UQCR1_MOUSE (Q9CZ13) Ubiquinol-cytochrome-c reductase complex co...	84	4e-16
11	MPPB_SCHPO (Q9P7X1) Probable mitochondrial-processing peptidase ...	70	4e-12
12	MPPB_NEUCR (P11913) Mitochondrial-processing peptidase beta subu...	70	5e-12
13	MPPB_LENED (Q9Y8B5) Mitochondrial-processing peptidase beta subu...	68	2e-11
14	MPPB_YEAST (P10507) Mitochondrial-processing peptidase beta subu...	58	2e-08
15	MPPA_SOLTU (P29677) Mitochondrial-processing peptidase alpha sub...	50	3e-06
16	MPPA_YEAST (P11914) Mitochondrial-processing peptidase alpha sub...	50	6e-06
17	UQCR1_EUGGR (P43264) Ubiquinol-cytochrome-c reductase complex co...	49	1e-05
18	UQCR1_YEAST (P07256) Ubiquinol-cytochrome-c reductase complex co...	49	1e-05
19	MPPA_NEUCR (P23955) Mitochondrial-processing peptidase alpha sub...	47	5e-05
20	MPPA2_ARATH (O04308) Probable mitochondrial-processing peptidase...	44	4e-04
21	MPPA_RAT (P20069) Mitochondrial-processing peptidase alpha subun...	42	0.001
22	MPPA_MOUSE (Q9DC61) Mitochondrial-processing peptidase alpha sub...	42	0.001
23	MPPA1_ARATH (Q9ZU25) Probable mitochondrial-processing peptidase...	42	0.002
24	Y5738_STRCO (O86835) Hypothetical zinc protease SCO5738 (EC 3.4....	41	0.003
25	MPPA_PONPY (Q5R513) Mitochondrial-processing peptidase alpha sub...	41	0.003
26	MPPA_HUMAN (Q10713) Mitochondrial-processing peptidase alpha sub...	41	0.003
27	MPPA_BLAEM (P97997) Mitochondrial-processing peptidase alpha sub...	39	0.010
28	MPPA_SCHPO (O94745) Probable mitochondrial-processing peptidase ...	39	0.013
29	YMT1_CAEEL (P98080) Hypothetical protein F56D2.1 in chromosome III	38	0.022
30	UQCR2_RAT (P32551) Ubiquinol-cytochrome-c reductase complex core...	32	0.94
31	Y855_MYCLE (O32965) Hypothetical zinc protease ML0855 (EC 3.4.99.-)	31	2.1
32	Y219_RICPR (O05945) Hypothetical zinc protease RP219 (EC 3.4.99.-)	30	3.6
33	SPG21_XENLA (Q5FVD6) Maspardin (Spastic paraplegia 21 autosomal ...	30	3.6
34	Y293_RICCN (Q92IX7) Hypothetical zinc protease RC0293 (EC 3.4.99.-)	30	4.6
35	TR95_MOUSE (Q6PGF3) Thyroid hormone receptor-associated protein ...	30	4.6
36	Y2805_MYCBO (P0A5S9) Hypothetical zinc protease Mb2805c (EC 3.4....	30	4.6
37	Y2782_MYCTU (P0A5S8) Hypothetical zinc protease Rv2782c/MT2852 (...	30	4.6
38	OR10A_DROME (Q9VYZ1) Putative odorant receptor 10a	30	6.1
39	YMEL1_RAT (Q925S8) ATP-dependent metalloprotease YME1L1 (EC 3.4....	30	6.1
40	SPG21_RAT (Q5XIC4) Maspardin (Spastic paraplegia 21 autosomal re...	30	6.1
41	SPG21_PONPY (Q5RES2) Maspardin (Spastic paraplegia 21 autosomal ...	30	6.1
42	SPG21_MOUSE (Q9CQC8) Maspardin (Spastic paraplegia 21 autosomal ...	30	6.1
43	SPG21_HUMAN (Q9NZD8) Maspardin (Spastic paraplegia 21 autosomal ...	30	6.1
44	SPG21_BOVIN (Q8MJJ1) Maspardin (Spastic paraplegia 21 autosomal ...	30	6.1
45	LAX3_ARATH (Q9CA25) Auxin transporter-like protein 3 (AUX1-like ...	29	7.9
46	SPG21_MACFA (Q4R5H6) Maspardin (Spastic paraplegia 21 autosomal ...	29	7.9

>MPPB_ARATH (Q42290) Probable mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 531

 Score =  126 bits (316), Expect = 5e-29
 Identities = 59/86 (68%), Positives = 74/86 (86%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +KSS+ LH+DG++ + EDIGRQ L YGRRIP  ELFARIDAVD ST++RVAN++I+D+DI
Sbjct: 446 LKSSLLLHMDGTSPIAEDIGRQLLTYGRRIPTAELFARIDAVDASTVKRVANKYIYDKDI 505

Query: 382 AIAAMGPIKTLPDYNWFRRRTYMLRY 305
           AI+A+GPI+ LPDYN FRRRTY  RY
Sbjct: 506 AISAIGPIQDLPDYNKFRRRTYWNRY 531

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>MPPB_MOUSE (Q9CXT8) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52)
          Length = 489

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 47/75 (62%), Positives = 59/75 (78%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +K+++ L LDGST + EDIGRQ L Y RRIPIPEL ARIDAVD  T+RRV  ++I D+  
Sbjct: 404 LKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAETVRRVCTKYIHDKSP 463

Query: 382 AIAAMGPIKTLPDYN 338
           AIAA+GPI+ LPD+N
Sbjct: 464 AIAALGPIERLPDFN 478

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>MPPB_HUMAN (O75439) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52)
          Length = 489

 Score = 95.9 bits (237), Expect = 7e-20
 Identities = 48/85 (56%), Positives = 61/85 (71%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +K+++ L LDGST + EDIGRQ L Y RRIPIPEL ARIDAV+  TIR V  ++I+++  
Sbjct: 404 LKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSP 463

Query: 382 AIAAMGPIKTLPDYNWFRRRTYMLR 308
           AIAA+GPIK LPD+   R     LR
Sbjct: 464 AIAAVGPIKQLPDFKQIRSNMCWLR 488

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>MPPB_BOVIN (Q3SZ71) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 490

 Score = 93.2 bits (230), Expect = 4e-19
 Identities = 44/75 (58%), Positives = 58/75 (77%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +K+++ L LDGST + EDIGRQ L Y RRIPIPEL ARIDAV+   IR V  ++I+D+  
Sbjct: 405 LKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAEIIREVCTKYIYDKSP 464

Query: 382 AIAAMGPIKTLPDYN 338
           A+AA+GPI+ LPD+N
Sbjct: 465 AVAAVGPIEQLPDFN 479

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>MPPB_RAT (Q03346) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52)
          Length = 489

 Score = 92.8 bits (229), Expect = 6e-19
 Identities = 44/75 (58%), Positives = 57/75 (76%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +K+++ L LDGST + EDIGRQ L Y RRIPIPEL ARIDAVD   +R V  ++I+ +  
Sbjct: 404 LKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVDAEMVREVCTKYIYGKSP 463

Query: 382 AIAAMGPIKTLPDYN 338
           AIAA+GPI+ LPD+N
Sbjct: 464 AIAALGPIERLPDFN 478

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>MPPB_PONPY (Q5REK3) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 489

 Score = 91.7 bits (226), Expect = 1e-18
 Identities = 44/74 (59%), Positives = 58/74 (78%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +K+++ L LDGST + EDIGRQ L Y RRIPIPEL ARIDAV+  TIR V  ++I+++  
Sbjct: 404 LKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSP 463

Query: 382 AIAAMGPIKTLPDY 341
           AIAA+GPI+ LPD+
Sbjct: 464 AIAAVGPIEQLPDF 477

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>MPPB_BLAEM (Q00302) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
           (BeMPP1)
          Length = 465

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 44/86 (51%), Positives = 61/86 (70%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +K+S+ L LDG+T V E+IGRQ L YGRR+   E+   +DAV    ++RVAN FI+D+D+
Sbjct: 380 LKTSLLLALDGTTPVAEEIGRQMLAYGRRLSPFEIDRLVDAVTVEDVKRVANEFIYDRDL 439

Query: 382 AIAAMGPIKTLPDYNWFRRRTYMLRY 305
           AI A+GP++ LPDYN  R    +LRY
Sbjct: 440 AIVAVGPVECLPDYNRIRSAMNLLRY 465

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>UQCR1_HUMAN (P31930) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 480

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 41/86 (47%), Positives = 59/86 (68%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +++++  HLDG+T V EDIGR  L YGRRIP+ E  +RI  VD S +R + +++I+DQ  
Sbjct: 395 LRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDASVVREICSKYIYDQCP 454

Query: 382 AIAAMGPIKTLPDYNWFRRRTYMLRY 305
           A+A  GPI+ LPDYN  R   + LR+
Sbjct: 455 AVAGYGPIEQLPDYNRIRSGMFWLRF 480

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>UQCR1_BOVIN (P31800) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 480

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 40/86 (46%), Positives = 57/86 (66%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +++++  HLDG+T V EDIGR  L YGRRIP+ E  +RI  VD   +R V +++ +DQ  
Sbjct: 395 LRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCP 454

Query: 382 AIAAMGPIKTLPDYNWFRRRTYMLRY 305
           A+A  GPI+ LPDYN  R   + LR+
Sbjct: 455 AVAGFGPIEQLPDYNRIRSGMFWLRF 480

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>UQCR1_MOUSE (Q9CZ13) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 480

 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 39/86 (45%), Positives = 57/86 (66%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +++++  HLDG+T V EDIGR  L YGRRIP+ E  +RI  VD   +R + +++ +DQ  
Sbjct: 395 LRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIQEVDAQMLRDICSKYFYDQCP 454

Query: 382 AIAAMGPIKTLPDYNWFRRRTYMLRY 305
           A+A  GPI+ LPDYN  R   + LR+
Sbjct: 455 AVAGYGPIEQLPDYNRIRSGMFWLRF 480

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>MPPB_SCHPO (Q9P7X1) Probable mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (PEP)
          Length = 457

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 37/86 (43%), Positives = 55/86 (63%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +++S+ L LD +TA+ EDIGRQ L  GRR+   E+  RI  +    + RVA+  I+D+DI
Sbjct: 372 LRASLLLSLDSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMIWDKDI 431

Query: 382 AIAAMGPIKTLPDYNWFRRRTYMLRY 305
           A++A+G I+ L DYN  R    M R+
Sbjct: 432 AVSAVGSIEGLLDYNRIRSSISMNRW 457

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>MPPB_NEUCR (P11913) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
           (Ubiquinol-cytochrome-c reductase complex core protein
           I) (EC 1.10.2.2)
          Length = 476

 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 39/74 (52%), Positives = 51/74 (68%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +K+SI L LDG+TAV EDIGRQ +  GRR+   E+   IDAV    +   AN+ I+DQDI
Sbjct: 391 LKASILLSLDGTTAVAEDIGRQIVTTGRRMSPAEIERIIDAVSAKDVMDFANKKIWDQDI 450

Query: 382 AIAAMGPIKTLPDY 341
           AI+A+G I+ L DY
Sbjct: 451 AISAVGSIEGLFDY 464

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>MPPB_LENED (Q9Y8B5) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 466

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 35/86 (40%), Positives = 53/86 (61%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +K+ + L LDG+TAV EDIGRQ +  G+R+   ++   +DAV    I+RVA ++++D+D 
Sbjct: 381 LKAGLLLSLDGTTAVAEDIGRQIVTSGKRMTPAQIENAVDAVSVDDIKRVAQKYLWDKDF 440

Query: 382 AIAAMGPIKTLPDYNWFRRRTYMLRY 305
           A+AA G I  L DY   R     + Y
Sbjct: 441 ALAAFGNIDGLKDYGRIRNDMSSMLY 466

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>MPPB_YEAST (P10507) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (PEP)
          Length = 462

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 27/80 (33%), Positives = 51/80 (63%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +K+++ L LDGSTA+VEDIGRQ +  G+R+   E+F ++D +    I   AN  + ++ +
Sbjct: 380 LKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPV 439

Query: 382 AIAAMGPIKTLPDYNWFRRR 323
           ++ A+G   T+P+ ++   +
Sbjct: 440 SMVALGNTSTVPNVSYIEEK 459

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>MPPA_SOLTU (P29677) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
           (Ubiquinol-cytochrome-c reductase subunit II) (EC
           1.10.2.2)
          Length = 504

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 27/74 (36%), Positives = 39/74 (52%)
 Frame = -1

Query: 559 KSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIA 380
           KS+I ++L+      EDIGRQ L YG R P+      IDAV    I  V  + I    + 
Sbjct: 423 KSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLI-SSPLT 481

Query: 379 IAAMGPIKTLPDYN 338
           +A+ G + +LP Y+
Sbjct: 482 MASYGDVLSLPSYD 495

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>MPPA_YEAST (P11914) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 482

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 25/66 (37%), Positives = 43/66 (65%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +KSS+ ++L+     +ED+GRQ L++GR+IP+ E+ ++I+ + P  I RVA   IF  ++
Sbjct: 374 LKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVA-EMIFTGNV 432

Query: 382 AIAAMG 365
             A  G
Sbjct: 433 NNAGNG 438

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>UQCR1_EUGGR (P43264) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 494

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQ 389
           +K    L LDG+T + +DIGRQ L +G R+P+   F ++DA+    + RV  R +  Q
Sbjct: 391 LKLQTMLQLDGTTNIADDIGRQVLSFGARVPLASFFEQLDAISREDLIRVGPRVLLRQ 448

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>UQCR1_YEAST (P07256) Ubiquinol-cytochrome-c reductase complex core protein I,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 457

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 25/68 (36%), Positives = 40/68 (58%)
 Frame = -1

Query: 508 IGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAIAAMGPIKTLPDYNWFR 329
           +G + LI G ++ + E F +IDA+    ++  A + ++DQDIAIA  G I+ L DY   R
Sbjct: 390 LGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIR 449

Query: 328 RRTYMLRY 305
               M+R+
Sbjct: 450 SDMSMMRW 457

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>MPPA_NEUCR (P23955) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 577

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 20/55 (36%), Positives = 37/55 (67%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFI 398
           ++SS+ ++L+     +ED+GRQ  ++GR+IP+ E+  RI+ +    +RRVA R +
Sbjct: 475 LRSSLLMNLESRMVELEDLGRQVQVHGRKIPVREMTRRINELTVKDLRRVAKRVV 529

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>MPPA2_ARATH (O04308) Probable mitochondrial-processing peptidase alpha subunit|
           2, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 2)
          Length = 499

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 22/79 (27%), Positives = 40/79 (50%)
 Frame = -1

Query: 559 KSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIA 380
           KS+I ++L+      EDIGRQ L YG R P+ +    +D +    I    ++ +  + + 
Sbjct: 420 KSAILMNLESRMIAAEDIGRQILTYGERKPVDQFLKTVDQLTLKDIADFTSK-VITKPLT 478

Query: 379 IAAMGPIKTLPDYNWFRRR 323
           +A  G +  +P Y+   +R
Sbjct: 479 MATFGDVLNVPSYDSVSKR 497

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>MPPA_RAT (P20069) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
           (P-55)
          Length = 524

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = -1

Query: 556 SSIQLHLDGSTAVVEDIGRQQL-IYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIA 380
           S + ++L+    + ED+GRQ L  + R++P  EL   I  V P  I+RVA++ +  +  A
Sbjct: 432 SMLMMNLESRPVIFEDVGRQVLATHSRKLP-HELCTLIRNVKPEDIKRVASKMLRGKP-A 489

Query: 379 IAAMGPIKTLPDY 341
           +AA+G +  LP Y
Sbjct: 490 VAALGDLTDLPTY 502

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>MPPA_MOUSE (Q9DC61) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
           (P-55)
          Length = 524

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = -1

Query: 556 SSIQLHLDGSTAVVEDIGRQQL-IYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIA 380
           S + ++L+    + ED+GRQ L  + R++P  EL   I  V P  I+RVA++ +  +  A
Sbjct: 432 SMLMMNLESRPVIFEDVGRQVLATHSRKLP-HELCTLIRNVKPEDIKRVASKMLRGKP-A 489

Query: 379 IAAMGPIKTLPDY 341
           +AA+G +  LP Y
Sbjct: 490 VAALGDLTDLPTY 502

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>MPPA1_ARATH (Q9ZU25) Probable mitochondrial-processing peptidase alpha subunit|
           1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1)
          Length = 503

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
 Frame = -1

Query: 559 KSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVAN--RFIFDQD 386
           KS++ ++L+      EDIGRQ L YG R P+ +    + +VD  T++ +A+    +  + 
Sbjct: 424 KSAVLMNLESRMIAAEDIGRQILTYGERKPVDQF---LKSVDQLTLKDIADFTSKVISKP 480

Query: 385 IAIAAMGPIKTLPDYN 338
           + + + G +  +P Y+
Sbjct: 481 LTMGSFGDVLAVPSYD 496

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>Y5738_STRCO (O86835) Hypothetical zinc protease SCO5738 (EC 3.4.99.-)|
          Length = 459

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 20/69 (28%), Positives = 43/69 (62%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           ++ S  L L+ + A++  IG+ +L +G ++ + ++ ARI +V P  +R VA R +  +  
Sbjct: 380 LQGSTVLGLEDTGALMNRIGKSELCWGEQMSVDDMLARIASVTPDDVRAVA-RDVLGRRP 438

Query: 382 AIAAMGPIK 356
           +++ +GP+K
Sbjct: 439 SLSVIGPLK 447

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>MPPA_PONPY (Q5R513) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 525

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 24/72 (33%), Positives = 39/72 (54%)
 Frame = -1

Query: 556 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 377
           S + ++L+    + ED+GRQ L    R    EL   I  V P  ++RVA++ +  +  A+
Sbjct: 433 SMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKP-AV 491

Query: 376 AAMGPIKTLPDY 341
           AA+G +  LP Y
Sbjct: 492 AALGDLTDLPTY 503

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>MPPA_HUMAN (Q10713) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
           (P-55)
          Length = 525

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 24/72 (33%), Positives = 39/72 (54%)
 Frame = -1

Query: 556 SSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIAI 377
           S + ++L+    + ED+GRQ L    R    EL   I  V P  ++RVA++ +  +  A+
Sbjct: 433 SMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKP-AV 491

Query: 376 AAMGPIKTLPDY 341
           AA+G +  LP Y
Sbjct: 492 AALGDLTDLPTY 503

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>MPPA_BLAEM (P97997) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 474

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 24/73 (32%), Positives = 35/73 (47%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           +KSS+ ++L+     VEDIGRQ L   +R+   EL   I AV    + RVA   +     
Sbjct: 373 LKSSLLMNLESQVITVEDIGRQVLAQNQRLEPLELVNNISAVTRDDLVRVAEALVAKPPT 432

Query: 382 AIAAMGPIKTLPD 344
            +A    +  L D
Sbjct: 433 MVAVGEDLTKLTD 445

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>MPPA_SCHPO (O94745) Probable mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 494

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQ-QLIYGRRIPIPELFARIDAVDPSTIRRVANRFI 398
           +KSS+ ++L+     +ED+GRQ Q   G  I   E+  +IDA+ PS + RVA R +
Sbjct: 400 LKSSLLMNLESRMISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSRVARRVL 455

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>YMT1_CAEEL (P98080) Hypothetical protein F56D2.1 in chromosome III|
          Length = 471

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 18/73 (24%), Positives = 38/73 (52%)
 Frame = -1

Query: 559 KSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDIA 380
           ++++  +L+ +T       ++ L  G    + EL A+I  VD   +R   +R ++D+D+A
Sbjct: 387 RTNLYQNLETNTQKAGFNAKELLYTGNLRQLSELEAQIQKVDAGAVREAISRHVYDRDLA 446

Query: 379 IAAMGPIKTLPDY 341
              +G  +  P+Y
Sbjct: 447 AVGVGRTEAFPNY 459

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>UQCR2_RAT (P32551) Ubiquinol-cytochrome-c reductase complex core protein 2,|
           mitochondrial precursor (EC 1.10.2.2) (Complex III
           subunit II)
          Length = 452

 Score = 32.3 bits (72), Expect = 0.94
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFI 398
           +K+   + ++ S   + +IG Q L  G  +P P +  +IDAV  + + + A +F+
Sbjct: 377 LKAGYLMSVETSEGFLSEIGSQALATGSYMPPPTVLQQIDAVADADVVKAAKKFV 431

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>Y855_MYCLE (O32965) Hypothetical zinc protease ML0855 (EC 3.4.99.-)|
          Length = 445

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           ++  I L L+ S + +  +GR +L YG+   I     +ID V    +  +A++ + ++  
Sbjct: 364 LRGGIILGLEDSNSWMSRLGRSELNYGKYRGIEHTLQQIDEVTVEQVNALAHQ-LLNKRY 422

Query: 382 AIAAMGPI---KTLP 347
             A +GP    KTLP
Sbjct: 423 GAAVLGPYASKKTLP 437

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>Y219_RICPR (O05945) Hypothetical zinc protease RP219 (EC 3.4.99.-)|
          Length = 412

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           ++S++Q+  + +T   E+IG+   ++G+ I   E+   I  +    I   AN+ IF    
Sbjct: 341 LRSNLQMAQEQNTYKSEEIGKNYSVFGKYILPEEIIEIITNIRADDIINTANK-IFSGTT 399

Query: 382 AIAAMGP 362
            +A +GP
Sbjct: 400 TLAIIGP 406

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>SPG21_XENLA (Q5FVD6) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein homolog)
          Length = 310

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 370 MGPIKTLPDYNWFRRRTYMLRY*IQPAVYHVYSL 269
           MG IK  PDYNWFR    + R  +      V+SL
Sbjct: 1   MGAIKISPDYNWFRSTVPLKRIIVDDDDSKVWSL 34

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>Y293_RICCN (Q92IX7) Hypothetical zinc protease RC0293 (EC 3.4.99.-)|
          Length = 412

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           ++S++Q+  + +T   E+IG+   ++G+ I   E+   I ++    I   AN+ IF    
Sbjct: 341 LRSNLQMAQEKNTYKSEEIGKNYSVFGQYISPEEIMEIIMSIKADDIINTANK-IFSGTT 399

Query: 382 AIAAMGP 362
             A +GP
Sbjct: 400 TSAIIGP 406

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>TR95_MOUSE (Q6PGF3) Thyroid hormone receptor-associated protein complex 95 kDa|
           component (Trap95) (Thyroid hormone receptor-associated
           protein 5) (Vitamin D3 receptor-interacting protein
           complex component DRIP92)
          Length = 828

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 205 YVPKWRNFLSLRFPCPCLPFANPQSCQ*W*ANSTDVFYDDDELSRYFSI 59
           YV +W  +    + CP LP A   SC+   A +TD+  DD +L+    I
Sbjct: 5   YVCEWEKWAKSTY-CPSLPLACAWSCRNLTAFTTDLRNDDQDLTHMIHI 52

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>Y2805_MYCBO (P0A5S9) Hypothetical zinc protease Mb2805c (EC 3.4.99.-)|
          Length = 438

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           ++  + L L+ S++ +  +GR +L YG+   I     +I+ V    +  VA R +  +  
Sbjct: 357 LRGGLVLGLEDSSSRMSRLGRSELNYGKHRSIEHTLRQIEQVTVEEVNAVA-RHLLSRRY 415

Query: 382 AIAAMGP 362
             A +GP
Sbjct: 416 GAAVLGP 422

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>Y2782_MYCTU (P0A5S8) Hypothetical zinc protease Rv2782c/MT2852 (EC 3.4.99.-)|
          Length = 438

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = -1

Query: 562 VKSSIQLHLDGSTAVVEDIGRQQLIYGRRIPIPELFARIDAVDPSTIRRVANRFIFDQDI 383
           ++  + L L+ S++ +  +GR +L YG+   I     +I+ V    +  VA R +  +  
Sbjct: 357 LRGGLVLGLEDSSSRMSRLGRSELNYGKHRSIEHTLRQIEQVTVEEVNAVA-RHLLSRRY 415

Query: 382 AIAAMGP 362
             A +GP
Sbjct: 416 GAAVLGP 422

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>OR10A_DROME (Q9VYZ1) Putative odorant receptor 10a|
          Length = 406

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 23/56 (41%), Positives = 28/56 (50%)
 Frame = +1

Query: 232 YTDAKTSNHLAFADCKHGTLLVESSNGACRSCV*TSCSLEES*LVPWQRWQYPGQR 399
           YT A  S  L +  C  GTL+ ESS G CR+    SC        PWQ ++ P QR
Sbjct: 318 YTVAALSQLLVY--CYGGTLVAESSTGLCRAMF--SC--------PWQLFK-PKQR 360

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>YMEL1_RAT (Q925S8) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1) (Meg-4)
          Length = 715

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +2

Query: 191 PLRHIICAWMWPYNILMPKQAIILPLQTVNMVHCWLNLVTEHVGPASEPVVVWKSLNWSH 370
           PL H+I A+  P NI +       P Q         + V EH  P+SEPV+  + L  S 
Sbjct: 15  PLSHLINAFHSPKNISVSVNTSASPKQH-------RDTVAEHEAPSSEPVLNLRDLGLSE 67

Query: 371 GSDGNI 388
              G I
Sbjct: 68  LKIGQI 73

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>SPG21_RAT (Q5XIC4) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein homolog)
          Length = 261

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -1

Query: 370 MGPIKTLPDYNWFR 329
           MG IK  PDYNWFR
Sbjct: 1   MGEIKVSPDYNWFR 14

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>SPG21_PONPY (Q5RES2) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein homolog)
          Length = 308

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -1

Query: 370 MGPIKTLPDYNWFR 329
           MG IK  PDYNWFR
Sbjct: 1   MGEIKVSPDYNWFR 14

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>SPG21_MOUSE (Q9CQC8) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein homolog) (Acid cluster protein 33)
          Length = 308

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -1

Query: 370 MGPIKTLPDYNWFR 329
           MG IK  PDYNWFR
Sbjct: 1   MGEIKVSPDYNWFR 14

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>SPG21_HUMAN (Q9NZD8) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein) (Acid cluster protein 33)
          Length = 308

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -1

Query: 370 MGPIKTLPDYNWFR 329
           MG IK  PDYNWFR
Sbjct: 1   MGEIKVSPDYNWFR 14

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>SPG21_BOVIN (Q8MJJ1) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein homolog)
          Length = 308

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -1

Query: 370 MGPIKTLPDYNWFR 329
           MG IK  PDYNWFR
Sbjct: 1   MGEIKVSPDYNWFR 14

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>LAX3_ARATH (Q9CA25) Auxin transporter-like protein 3 (AUX1-like protein 3)|
          Length = 470

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 193 WRNFLSLRFPCPCLPFANPQSCQ*W*ANSTDVFYDDDELSRYFSIFVFGYCC 38
           WRN L L F C  L F +        A +++++Y +D+L +    ++FG CC
Sbjct: 132 WRN-LGLIFNCTFLLFGSVIQLI---ACASNIYYINDKLDKRTWTYIFGACC 179

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>SPG21_MACFA (Q4R5H6) Maspardin (Spastic paraplegia 21 autosomal recessive Mast|
           syndrome protein homolog)
          Length = 308

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 370 MGPIKTLPDYNWFR 329
           MG +K  PDYNWFR
Sbjct: 1   MGEVKVSPDYNWFR 14


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,938,586
Number of Sequences: 219361
Number of extensions: 1815459
Number of successful extensions: 4924
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 4756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4917
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result