ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13m04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184998.1| Oryza sativa (japonica cultivar-group), mRNA 446 e-122
2dbj|AK065910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 446 e-122
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 119 1e-23
4gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 geno... 119 1e-23
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
6gb|BT012773.1| Lycopersicon esculentum clone 113752F, mRNA sequence 100 1e-17
7gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 94 7e-16
8gb|AY111859.1| Zea mays CL35478_1 mRNA sequence 92 3e-15
9gb|DQ366717.1| Uncultured Prochlorococcus marinus clone ASNC3046... 58 4e-05
10gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 52 0.002
11dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 52 0.002
12gb|AC009894.2| Arabidopsis thaliana chromosome I BAC T6H22 genom... 50 0.009
13gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 48 0.035
14gb|DQ366735.1| Uncultured Prochlorococcus marinus clone HOT0M-2B... 48 0.035
15dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 48 0.035
16ref|NM_104483.2| Arabidopsis thaliana GTP binding AT1G56050 mRNA... 46 0.14
17gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 46 0.14
18emb|BX816905.1|CNS0ABNY Arabidopsis thaliana Full-length cDNA Co... 46 0.14
19gb|AE000511.1| Helicobacter pylori 26695, complete genome 46 0.14
20gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 44 0.55
21gb|AC117671.8| Mus musculus chromosome 10, clone RP23-389G8, com... 44 0.55
22gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosom... 42 2.2
23gb|AC117684.10| Mus musculus chromosome 9, clone RP23-438A6, com... 42 2.2
24gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 40 8.6
25gb|AC149479.1| Populus trichocarpa clone Pop1-017N13, complete s... 40 8.6
26gb|AC149428.1| Populus trichocarpa clone Pop1-080J15, complete s... 40 8.6
27gb|BC043232.1| Homo sapiens zinc finger and SCAN domain containi... 40 8.6
28ref|NM_024303.1| Homo sapiens zinc finger and SCAN domain contai... 40 8.6
29emb|AL136985.11| Human DNA sequence from clone RP11-63G10 on chr... 40 8.6
30emb|AL662975.3|OSJN00180 Oryza sativa genomic DNA, chromosome 4,... 40 8.6
31emb|BX936313.8| Zebrafish DNA sequence from clone CH211-106J16 i... 40 8.6
32gb|AC087045.7| Homo sapiens chromosome 8, clone CTD-2342N23, com... 40 8.6
33gb|AC083843.5| Homo sapiens chromosome 8, clone RP11-157B5, comp... 40 8.6
34gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 8.6
35gb|AC171015.5| Gallus gallus BAC clone CH261-18L11 from chromoso... 40 8.6
36gb|AC009185.6|AC009185 Homo sapiens chromosome 5 clone CTC-248O1... 40 8.6
37dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
38dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
39dbj|AK223485.1| Homo sapiens mRNA for zinc finger and SCAN domai... 40 8.6
40gb|AC092646.2| Homo sapiens BAC clone RP11-415D20 from 2, comple... 40 8.6
41gb|AC008389.4|AC008389 Homo sapiens chromosome 5 clone CTC-232D5... 40 8.6
42gb|AC090572.7| Homo sapiens chromosome 8, clone RP11-386D6, comp... 40 8.6
43dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
44gb|AC011506.3|AC011506 Homo sapiens chromosome 19 clone CTD-2086... 40 8.6
45dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
46dbj|AK098700.1| Homo sapiens cDNA FLJ25834 fis, clone TST08262 40 8.6
47gb|BC002636.1| Homo sapiens zinc finger and SCAN domain containi... 40 8.6
48gb|AC108437.14| Mus musculus chromosome 13, clone RP23-207N7, co... 40 8.6
49gb|U95137.1|RNU95137 Rattus norvegicus Na+-Ca+ exchanger (NCX1) ... 40 8.6 
>ref|NM_184998.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1580

 Score =  446 bits (225), Expect = e-122
 Identities = 363/409 (88%)
 Strand = Plus / Minus

                                                                        
Query: 204  tgttgtcacacattgaatcggaagagcatgacatctccttcctgcacaatatattccttc 263
            |||||||| || ||||| ||||| ||||||||||| ||||||||||| || || ||||||
Sbjct: 1301 tgttgtcaaacgttgaaccggaaaagcatgacatcgccttcctgcacgatgtaatccttc 1242

                                                                        
Query: 264  ccttccaacctcatcagtcccttctcccttgctgctccaagagaacccgccgcaacaaaa 323
            ||||||||||||| || |||||||||||||||  ||||||||||||||||||| ||||||
Sbjct: 1241 ccttccaacctcaacaatcccttctcccttgcaactccaagagaacccgccgcgacaaaa 1182

                                                                        
Query: 324  tcatcgtaagatacagtttcagctctaatgaagcctttctggaagtcgctatgaataact 383
            ||||| || |||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 1181 tcatcatatgatacagtttcagctctaatgaagcctttctgaaagtcactgtgaataact 1122

                                                                        
Query: 384  ccggctgcttgaggtgcagtcatgcctgaaataatggtccaagcttttgtttcctgctct 443
            || ||||||||||||||||||||||||| || ||| |||||||||||||||||||  |||
Sbjct: 1121 cctgctgcttgaggtgcagtcatgcctgcaagaatagtccaagcttttgtttccttatct 1062

                                                                        
Query: 444  ccggtagtgaaataagttcttagtcccaaaaggttataggttgcttttaccaagttgcct 503
            || || ||||||||||| || | ||||| ||||| ||| ||||| |||||||| || |||
Sbjct: 1061 ccagttgtgaaataagtcctcaatcccagaaggtcatatgttgcctttaccaaatttcct 1002

                                                                        
Query: 504  agcccactttcagcaacatcaagagaatttaggtattcaactctctcttctagtggtagt 563
            || |||||||||| |||| |||| || ||||| ||||| ||||||||||||| ||| |||
Sbjct: 1001 agtccactttcagtaacaccaagggattttagatattcgactctctcttctaatggcagt 942

                                                             
Query: 564  tcagacagttcagcctcaacctgagctgatattgtaaccatgccagatt 612
            ||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941  tcagcaagttcagcctcaacctgagctgatattgtaaccatgccagatt 893
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>dbj|AK065910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045L16, full
            insert sequence
          Length = 2215

 Score =  446 bits (225), Expect = e-122
 Identities = 363/409 (88%)
 Strand = Plus / Minus

                                                                        
Query: 204  tgttgtcacacattgaatcggaagagcatgacatctccttcctgcacaatatattccttc 263
            |||||||| || ||||| ||||| ||||||||||| ||||||||||| || || ||||||
Sbjct: 1932 tgttgtcaaacgttgaaccggaaaagcatgacatcgccttcctgcacgatgtaatccttc 1873

                                                                        
Query: 264  ccttccaacctcatcagtcccttctcccttgctgctccaagagaacccgccgcaacaaaa 323
            ||||||||||||| || |||||||||||||||  ||||||||||||||||||| ||||||
Sbjct: 1872 ccttccaacctcaacaatcccttctcccttgcaactccaagagaacccgccgcgacaaaa 1813

                                                                        
Query: 324  tcatcgtaagatacagtttcagctctaatgaagcctttctggaagtcgctatgaataact 383
            ||||| || |||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 1812 tcatcatatgatacagtttcagctctaatgaagcctttctgaaagtcactgtgaataact 1753

                                                                        
Query: 384  ccggctgcttgaggtgcagtcatgcctgaaataatggtccaagcttttgtttcctgctct 443
            || ||||||||||||||||||||||||| || ||| |||||||||||||||||||  |||
Sbjct: 1752 cctgctgcttgaggtgcagtcatgcctgcaagaatagtccaagcttttgtttccttatct 1693

                                                                        
Query: 444  ccggtagtgaaataagttcttagtcccaaaaggttataggttgcttttaccaagttgcct 503
            || || ||||||||||| || | ||||| ||||| ||| ||||| |||||||| || |||
Sbjct: 1692 ccagttgtgaaataagtcctcaatcccagaaggtcatatgttgcctttaccaaatttcct 1633

                                                                        
Query: 504  agcccactttcagcaacatcaagagaatttaggtattcaactctctcttctagtggtagt 563
            || |||||||||| |||| |||| || ||||| ||||| ||||||||||||| ||| |||
Sbjct: 1632 agtccactttcagtaacaccaagggattttagatattcgactctctcttctaatggcagt 1573

                                                             
Query: 564  tcagacagttcagcctcaacctgagctgatattgtaaccatgccagatt 612
            ||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1572 tcagcaagttcagcctcaacctgagctgatattgtaaccatgccagatt 1524
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  119 bits (60), Expect = 1e-23
 Identities = 72/76 (94%)
 Strand = Plus / Plus

                                                                            
Query: 335      tacagtttcagctctaatgaagcctttctggaagtcgctatgaataactccggctgcttg 394
                |||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 32081581 tacagtttcagctctaatgaagcctttctgaaagtcactgtgaataactcctgctgcttg 32081640

                                
Query: 395      aggtgcagtcatgcct 410
                ||||||||||||||||
Sbjct: 32081641 aggtgcagtcatgcct 32081656



 Score =  117 bits (59), Expect = 5e-23
 Identities = 125/147 (85%)
 Strand = Plus / Plus

                                                                            
Query: 441      tctccggtagtgaaataagttcttagtcccaaaaggttataggttgcttttaccaagttg 500
                ||||| || ||||||||||| || | ||||| ||||| ||| ||||| |||||||| || 
Sbjct: 32081848 tctccagttgtgaaataagtcctcaatcccagaaggtcatatgttgcctttaccaaattt 32081907

                                                                            
Query: 501      cctagcccactttcagcaacatcaagagaatttaggtattcaactctctcttctagtggt 560
                ||||| |||||||||| |||| |||| || ||||| ||||| ||||||||||||| ||| 
Sbjct: 32081908 cctagtccactttcagtaacaccaagggattttagatattcgactctctcttctaatggc 32081967

                                           
Query: 561      agttcagacagttcagcctcaacctga 587
                |||||||  ||||||||||||||||||
Sbjct: 32081968 agttcagcaagttcagcctcaacctga 32081994



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                            
Query: 204      tgttgtcacacattgaatcggaagagcatgacatctccttcctgcacaatatattccttc 263
                |||||||| || ||||| ||||| ||||||||||| ||||||||||| || || ||||||
Sbjct: 32081195 tgttgtcaaacgttgaaccggaaaagcatgacatcgccttcctgcacgatgtaatccttc 32081254

                             
Query: 264      ccttccaacctca 276
                |||||||||||||
Sbjct: 32081255 ccttccaacctca 32081267



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                         
Query: 281      tcccttctcccttgctgctccaagagaacccgccgcaacaaaatcatcgtaagatac 337
                |||||||||||||||  ||||||||||||||||||| ||||||||||| || |||||
Sbjct: 32081352 tcccttctcccttgcaactccaagagaacccgccgcgacaaaatcatcatatgatac 32081408



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                                
Query: 581      aacctgagctgatattgtaaccatgccagatt 612
                ||||||||||||||||||||||||||||||||
Sbjct: 32082111 aacctgagctgatattgtaaccatgccagatt 32082142



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 420      gtccaagcttttgtttcctg 439
                ||||||||||||||||||||
Sbjct: 32081745 gtccaagcttttgtttcctg 32081764
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>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete
             sequence
          Length = 178158

 Score =  119 bits (60), Expect = 1e-23
 Identities = 72/76 (94%)
 Strand = Plus / Plus

                                                                         
Query: 335   tacagtttcagctctaatgaagcctttctggaagtcgctatgaataactccggctgcttg 394
             |||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 82706 tacagtttcagctctaatgaagcctttctgaaagtcactgtgaataactcctgctgcttg 82765

                             
Query: 395   aggtgcagtcatgcct 410
             ||||||||||||||||
Sbjct: 82766 aggtgcagtcatgcct 82781



 Score =  117 bits (59), Expect = 5e-23
 Identities = 125/147 (85%)
 Strand = Plus / Plus

                                                                         
Query: 441   tctccggtagtgaaataagttcttagtcccaaaaggttataggttgcttttaccaagttg 500
             ||||| || ||||||||||| || | ||||| ||||| ||| ||||| |||||||| || 
Sbjct: 82973 tctccagttgtgaaataagtcctcaatcccagaaggtcatatgttgcctttaccaaattt 83032

                                                                         
Query: 501   cctagcccactttcagcaacatcaagagaatttaggtattcaactctctcttctagtggt 560
             ||||| |||||||||| |||| |||| || ||||| ||||| ||||||||||||| ||| 
Sbjct: 83033 cctagtccactttcagtaacaccaagggattttagatattcgactctctcttctaatggc 83092

                                        
Query: 561   agttcagacagttcagcctcaacctga 587
             |||||||  ||||||||||||||||||
Sbjct: 83093 agttcagcaagttcagcctcaacctga 83119



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                         
Query: 204   tgttgtcacacattgaatcggaagagcatgacatctccttcctgcacaatatattccttc 263
             |||||||| || ||||| ||||| ||||||||||| ||||||||||| || || ||||||
Sbjct: 82320 tgttgtcaaacgttgaaccggaaaagcatgacatcgccttcctgcacgatgtaatccttc 82379

                          
Query: 264   ccttccaacctca 276
             |||||||||||||
Sbjct: 82380 ccttccaacctca 82392



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                      
Query: 281   tcccttctcccttgctgctccaagagaacccgccgcaacaaaatcatcgtaagatac 337
             |||||||||||||||  ||||||||||||||||||| ||||||||||| || |||||
Sbjct: 82477 tcccttctcccttgcaactccaagagaacccgccgcgacaaaatcatcatatgatac 82533



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                             
Query: 581   aacctgagctgatattgtaaccatgccagatt 612
             ||||||||||||||||||||||||||||||||
Sbjct: 83236 aacctgagctgatattgtaaccatgccagatt 83267



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   gtccaagcttttgtttcctg 439
             ||||||||||||||||||||
Sbjct: 82870 gtccaagcttttgtttcctg 82889
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  119 bits (60), Expect = 1e-23
 Identities = 72/76 (94%)
 Strand = Plus / Plus

                                                                            
Query: 335      tacagtttcagctctaatgaagcctttctggaagtcgctatgaataactccggctgcttg 394
                |||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 32172093 tacagtttcagctctaatgaagcctttctgaaagtcactgtgaataactcctgctgcttg 32172152

                                
Query: 395      aggtgcagtcatgcct 410
                ||||||||||||||||
Sbjct: 32172153 aggtgcagtcatgcct 32172168



 Score =  117 bits (59), Expect = 5e-23
 Identities = 125/147 (85%)
 Strand = Plus / Plus

                                                                            
Query: 441      tctccggtagtgaaataagttcttagtcccaaaaggttataggttgcttttaccaagttg 500
                ||||| || ||||||||||| || | ||||| ||||| ||| ||||| |||||||| || 
Sbjct: 32172360 tctccagttgtgaaataagtcctcaatcccagaaggtcatatgttgcctttaccaaattt 32172419

                                                                            
Query: 501      cctagcccactttcagcaacatcaagagaatttaggtattcaactctctcttctagtggt 560
                ||||| |||||||||| |||| |||| || ||||| ||||| ||||||||||||| ||| 
Sbjct: 32172420 cctagtccactttcagtaacaccaagggattttagatattcgactctctcttctaatggc 32172479

                                           
Query: 561      agttcagacagttcagcctcaacctga 587
                |||||||  ||||||||||||||||||
Sbjct: 32172480 agttcagcaagttcagcctcaacctga 32172506



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                            
Query: 204      tgttgtcacacattgaatcggaagagcatgacatctccttcctgcacaatatattccttc 263
                |||||||| || ||||| ||||| ||||||||||| ||||||||||| || || ||||||
Sbjct: 32171707 tgttgtcaaacgttgaaccggaaaagcatgacatcgccttcctgcacgatgtaatccttc 32171766

                             
Query: 264      ccttccaacctca 276
                |||||||||||||
Sbjct: 32171767 ccttccaacctca 32171779



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                         
Query: 281      tcccttctcccttgctgctccaagagaacccgccgcaacaaaatcatcgtaagatac 337
                |||||||||||||||  ||||||||||||||||||| ||||||||||| || |||||
Sbjct: 32171864 tcccttctcccttgcaactccaagagaacccgccgcgacaaaatcatcatatgatac 32171920



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                                
Query: 581      aacctgagctgatattgtaaccatgccagatt 612
                ||||||||||||||||||||||||||||||||
Sbjct: 32172623 aacctgagctgatattgtaaccatgccagatt 32172654



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 420      gtccaagcttttgtttcctg 439
                ||||||||||||||||||||
Sbjct: 32172257 gtccaagcttttgtttcctg 32172276
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>gb|BT012773.1| Lycopersicon esculentum clone 113752F, mRNA sequence
          Length = 1846

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 182/226 (80%)
 Strand = Plus / Minus

                                                                        
Query: 213  acattgaatcggaagagcatgacatctccttcctgcacaatatattccttcccttccaac 272
            |||||||| ||||| ||||| | ||| ||||| ||||||| ||| || || ||||| |||
Sbjct: 1454 acattgaaccggaacagcattatatccccttcttgcacaacataatcttttccttctaac 1395

                                                                        
Query: 273  ctcatcagtcccttctcccttgctgctccaagagaacccgccgcaacaaaatcatcgtaa 332
            |||| |||||| ||||||||||| ||| ||| |||||| || | |||||| |||||||||
Sbjct: 1394 ctcaacagtcctttctcccttgcagctgcaaaagaaccagcagaaacaaagtcatcgtaa 1335

                                                                        
Query: 333  gatacagtttcagctctaatgaagcctttctggaagtcgctatgaataactccggctgct 392
            |  || || || || || |||||||| || |  ||||||   |||||||| || ||||||
Sbjct: 1334 gcaaccgtctctgccctgatgaagcccttttcaaagtcggagtgaataaccccagctgct 1275

                                                          
Query: 393  tgaggtgcagtcatgcctgaaataatggtccaagcttttgtttcct 438
            ||||| |||||||| ||||  |  |||||||| ||||| |||||||
Sbjct: 1274 tgaggagcagtcattcctgtgaggatggtccatgctttggtttcct 1229
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                           
Query: 381     actccggctgcttgaggtgcagtcatgcctgaaataatggtccaagcttttgtttcctgc 440
               ||||| |||||||| || |||||||| |||||| |||| ||||||||||| |||||||  
Sbjct: 1134184 actccagctgcttgtggagcagtcattcctgaattaattgtccaagctttggtttccttt 1134243

                                      
Query: 441     tctccggtagtgaaataagttct 463
               |||||||||||||||||||||||
Sbjct: 1134244 tctccggtagtgaaataagttct 1134266
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>gb|AY111859.1| Zea mays CL35478_1 mRNA sequence
          Length = 509

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 104/125 (83%)
 Strand = Plus / Minus

                                                                       
Query: 486 gcttttaccaagttgcctagcccactttcagcaacatcaagagaatttaggtattcaact 545
           ||||||||||| || ||||| ||||||||||||     |||||| ||||  |||||  ||
Sbjct: 509 gcttttaccaaatttcctagtccactttcagcannnnnaagagattttaaatattctgct 450

                                                                       
Query: 546 ctctcttctagtggtagttcagacagttcagcctcaacctgagctgatattgtaaccatg 605
           ||||| ||||| ||||| || |  |||||||| |||||||||||||||||||||||||| 
Sbjct: 449 ctctcgtctagaggtagctcggcgagttcagcttcaacctgagctgatattgtaaccata 390

                
Query: 606 ccaga 610
           |||||
Sbjct: 389 ccaga 385
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>gb|DQ366717.1| Uncultured Prochlorococcus marinus clone ASNC3046 genomic sequence
          Length = 33332

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 420   gtccaagcttttgtttcctgctctccggtagtgaaataagttcttagtcccaa 472
             ||||| |||||||| ||||  ||||||||||||||||||||| ||| ||||||
Sbjct: 21531 gtccatgcttttgtctccttttctccggtagtgaaataagtttttaatcccaa 21583
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                 
Query: 219     aatcggaagagcatgacatctccttcctgcacaatatattccttcccttc 268
               |||||||| | ||| ||||| |||||||||||||||||||| || |||||
Sbjct: 5785119 aatcggaataacatcacatcaccttcctgcacaatatattctttaccttc 5785168
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 219    aatcggaagagcatgacatctccttcctgcacaatatattccttcccttc 268
              |||||||| | ||| ||||| |||||||||||||||||||| || |||||
Sbjct: 841472 aatcggaataacatcacatcgccttcctgcacaatatattctttaccttc 841521
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>gb|AC009894.2| Arabidopsis thaliana chromosome I BAC T6H22 genomic sequence, complete
             sequence
          Length = 96489

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                         
Query: 335   tacagtttcagctctaatgaagcctttctggaagtcgctatgaataactccggctgcttg 394
             |||||| ||||||||||| || |||||||  |||||   |||||| || || || |||||
Sbjct: 63970 tacagtctcagctctaataaaacctttctcaaagtcagaatgaatgacgccagcagcttg 64029

                              
Query: 395   aggtgcagtcatgcctg 411
              ||||||||||||||||
Sbjct: 64030 tggtgcagtcatgcctg 64046
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>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                   
Query: 420     gtccaagcttttgtttcctgctctccggtagtgaaataagttcttagtccca 471
               ||||| |||||||| ||||  ||||| ||||||||||||||| ||| |||||
Sbjct: 1147325 gtccaggcttttgtctccttttctccagtagtgaaataagtttttaatccca 1147376
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>gb|DQ366735.1| Uncultured Prochlorococcus marinus clone HOT0M-2B5 genomic sequence
          Length = 35254

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 417   atggtccaagcttttgtttcctgctctccggtagtgaaataagttcttagtcccaa 472
             |||||||| |||||||| ||||  ||||| || |||||||||||| ||| ||||||
Sbjct: 32153 atggtccatgcttttgtctccttttctcccgtggtgaaataagtttttaatcccaa 32098
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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 213     acattgaatcggaagagcatgacatctccttcctgcacaa 252
               ||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 1647176 acattaaagcggaagagcatcacatctccctcctgcacaa 1647215
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>ref|NM_104483.2| Arabidopsis thaliana GTP binding AT1G56050 mRNA, complete cds
          Length = 1500

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 104/131 (79%)
 Strand = Plus / Minus

                                                                        
Query: 279  agtcccttctcccttgctgctccaagagaacccgccgcaacaaaatcatcgtaagataca 338
            ||||| ||||||||||||||| | | ||| || || |  |||||||| || || |  |||
Sbjct: 1270 agtcctttctcccttgctgctgctatagatccagcagtgacaaaatcttcatatgcaaca 1211

                                                                        
Query: 339  gtttcagctctaatgaagcctttctggaagtcgctatgaataactccggctgcttgaggt 398
            || ||||||||||| || |||||||  |||||   |||||| || || || ||||| |||
Sbjct: 1210 gtctcagctctaataaaacctttctcaaagtcagaatgaatgacgccagcagcttgtggt 1151

                       
Query: 399  gcagtcatgcc 409
            |||||||||||
Sbjct: 1150 gcagtcatgcc 1140
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 213   acattgaatcggaagagcatgacatctccttcctg 247
             |||| ||| ||||||||||| ||||||||||||||
Sbjct: 22088 acatggaaacggaagagcatcacatctccttcctg 22122
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>emb|BX816905.1|CNS0ABNY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH75ZE07 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1500

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 104/131 (79%)
 Strand = Plus / Minus

                                                                        
Query: 279  agtcccttctcccttgctgctccaagagaacccgccgcaacaaaatcatcgtaagataca 338
            ||||| ||||||||||||||| | | ||| || || |  |||||||| || || |  |||
Sbjct: 1269 agtcctttctcccttgctgctgctatagatccagcagtgacaaaatcttcatatgcaaca 1210

                                                                        
Query: 339  gtttcagctctaatgaagcctttctggaagtcgctatgaataactccggctgcttgaggt 398
            || ||||||||||| || |||||||  |||||   |||||| || || || ||||| |||
Sbjct: 1209 gtctcagctctaataaaacctttctcaaagtcagaatgaatgacgccagcagcttgtggt 1150

                       
Query: 399  gcagtcatgcc 409
            |||||||||||
Sbjct: 1149 gcagtcatgcc 1139
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>gb|AE000511.1| Helicobacter pylori 26695, complete genome
          Length = 1667867

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 339    gtttcagctctaatgaagccttt 361
              |||||||||||||||||||||||
Sbjct: 601209 gtttcagctctaatgaagccttt 601231
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                 
Query: 351     atgaagcctttctggaagtcgctatgaataactccggctgcttgaggtgc 400
               ||||||||||||| ||||||| | || || || ||||||||||| |||||
Sbjct: 5360462 atgaagcctttctcgaagtcggtgtggatcacgccggctgcttgcggtgc 5360413
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>gb|AC117671.8| Mus musculus chromosome 10, clone RP23-389G8, complete sequence
          Length = 189341

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 174    gaataaagcttgaaacttcttg 195
              ||||||||||||||||||||||
Sbjct: 111752 gaataaagcttgaaacttcttg 111731
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>gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosome 9, complete sequence
          Length = 210202

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    gaagagcatgacatctccttc 244
              |||||||||||||||||||||
Sbjct: 167920 gaagagcatgacatctccttc 167940
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>gb|AC117684.10| Mus musculus chromosome 9, clone RP23-438A6, complete sequence
          Length = 196053

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   gaagagcatgacatctccttc 244
             |||||||||||||||||||||
Sbjct: 11388 gaagagcatgacatctccttc 11408
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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                      
Query: 216    ttgaatcggaagagcatgacatctccttcctgcacaatatattccttcccttccaa 271
              ||||| |||||  |||||||||| || || | ||||||||| || |||||||||||
Sbjct: 446717 ttgaaacggaaatgcatgacatcaccgtctttcacaatatactctttcccttccaa 446662
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>gb|AC149479.1| Populus trichocarpa clone Pop1-017N13, complete sequence
          Length = 129742

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 378   ataactccggctgcttgaggtgcagtcatgcctgaa 413
             |||||||| || ||||||||||| ||||| ||||||
Sbjct: 78516 ataactccagcagcttgaggtgctgtcattcctgaa 78481
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>gb|AC149428.1| Populus trichocarpa clone Pop1-080J15, complete sequence
          Length = 98246

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 378   ataactccggctgcttgaggtgcagtcatgcctgaa 413
             |||||||| || ||||||||||| ||||| ||||||
Sbjct: 53888 ataactccagcagcttgaggtgctgtcattcctgaa 53853
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>gb|BC043232.1| Homo sapiens zinc finger and SCAN domain containing 5, mRNA (cDNA
            clone MGC:44323 IMAGE:5295665), complete cds
          Length = 2472

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 243  tcctgcacaatatattcctt 262
            ||||||||||||||||||||
Sbjct: 1126 tcctgcacaatatattcctt 1107
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>ref|NM_024303.1| Homo sapiens zinc finger and SCAN domain containing 5 (ZSCAN5),
           mRNA
          Length = 1938

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 tcctgcacaatatattcctt 262
           ||||||||||||||||||||
Sbjct: 591 tcctgcacaatatattcctt 572
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>emb|AL136985.11| Human DNA sequence from clone RP11-63G10 on chromosome 1p32.1-32.3
             Contains the JUN gene for v-jun sarcoma virus 17 oncogene
             homolog (avian), a novel gene, the 5' end of a novel gene
             and a CpG island, complete sequence
          Length = 142664

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 565   cagacagttcagcctcaacc 584
             ||||||||||||||||||||
Sbjct: 99721 cagacagttcagcctcaacc 99740
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>emb|AL662975.3|OSJN00180 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071G03,
             complete sequence
          Length = 135169

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   atcaagagaatttaggtatt 540
             ||||||||||||||||||||
Sbjct: 97578 atcaagagaatttaggtatt 97559
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>emb|BX936313.8| Zebrafish DNA sequence from clone CH211-106J16 in linkage group 3,
             complete sequence
          Length = 78174

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   ctcccttgctgctccaagag 306
             ||||||||||||||||||||
Sbjct: 21228 ctcccttgctgctccaagag 21247
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>gb|AC087045.7| Homo sapiens chromosome 8, clone CTD-2342N23, complete sequence
          Length = 121280

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   tcagtcccttctcccttgct 296
             ||||||||||||||||||||
Sbjct: 10649 tcagtcccttctcccttgct 10668
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>gb|AC083843.5| Homo sapiens chromosome 8, clone RP11-157B5, complete sequence
          Length = 159032

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   tcagtcccttctcccttgct 296
             ||||||||||||||||||||
Sbjct: 98534 tcagtcccttctcccttgct 98553
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 243     tcctgcacaatatattccttcccttcca 270
               |||||||||||||| ||||| |||||||
Sbjct: 2583146 tcctgcacaatataatccttgccttcca 2583173
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>gb|AC171015.5| Gallus gallus BAC clone CH261-18L11 from chromosome ul, complete
             sequence
          Length = 215430

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   ggctgcttgaggtgcagtca 405
             ||||||||||||||||||||
Sbjct: 38725 ggctgcttgaggtgcagtca 38744
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>gb|AC009185.6|AC009185 Homo sapiens chromosome 5 clone CTC-248O19, complete sequence
          Length = 87973

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    aaaatgattgtattttcctt 65
             ||||||||||||||||||||
Sbjct: 37230 aaaatgattgtattttcctt 37249
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 521      atcaagagaatttaggtatt 540
                ||||||||||||||||||||
Sbjct: 12169028 atcaagagaatttaggtatt 12169009
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 416      aatggtccaagcttttgttt 435
                ||||||||||||||||||||
Sbjct: 28383637 aatggtccaagcttttgttt 28383656
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>dbj|AK223485.1| Homo sapiens mRNA for zinc finger and SCAN domain containing 5
           variant, clone: FCC119F06
          Length = 1867

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 tcctgcacaatatattcctt 262
           ||||||||||||||||||||
Sbjct: 552 tcctgcacaatatattcctt 533
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>gb|AC092646.2| Homo sapiens BAC clone RP11-415D20 from 2, complete sequence
          Length = 176982

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 134  aattttgccttgccttgtaa 153
            ||||||||||||||||||||
Sbjct: 2408 aattttgccttgccttgtaa 2389
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>gb|AC008389.4|AC008389 Homo sapiens chromosome 5 clone CTC-232D5, complete sequence
          Length = 80074

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    aaaatgattgtattttcctt 65
             ||||||||||||||||||||
Sbjct: 75893 aaaatgattgtattttcctt 75912
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>gb|AC090572.7| Homo sapiens chromosome 8, clone RP11-386D6, complete sequence
          Length = 187022

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    attttgccttgccttgtaag 154
              ||||||||||||||||||||
Sbjct: 104178 attttgccttgccttgtaag 104159
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>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1148_D05
          Length = 155146

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 416  aatggtccaagcttttgttt 435
            ||||||||||||||||||||
Sbjct: 7758 aatggtccaagcttttgttt 7777
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>gb|AC011506.3|AC011506 Homo sapiens chromosome 19 clone CTD-2086L14, complete sequence
          Length = 100110

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   tcctgcacaatatattcctt 262
             ||||||||||||||||||||
Sbjct: 41397 tcctgcacaatatattcctt 41416
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>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1743_B12
          Length = 175645

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 416    aatggtccaagcttttgttt 435
              ||||||||||||||||||||
Sbjct: 175394 aatggtccaagcttttgttt 175413
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>dbj|AK098700.1| Homo sapiens cDNA FLJ25834 fis, clone TST08262
          Length = 1813

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 tcctgcacaatatattcctt 262
           ||||||||||||||||||||
Sbjct: 487 tcctgcacaatatattcctt 468
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>gb|BC002636.1| Homo sapiens zinc finger and SCAN domain containing 5, mRNA (cDNA
           clone MGC:4161 IMAGE:3606994), complete cds
          Length = 1938

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 tcctgcacaatatattcctt 262
           ||||||||||||||||||||
Sbjct: 591 tcctgcacaatatattcctt 572
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>gb|AC108437.14| Mus musculus chromosome 13, clone RP23-207N7, complete sequence
          Length = 194800

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 277   tcagtcccttctcccttgctgctc 300
             |||||||||||||||||| |||||
Sbjct: 50637 tcagtcccttctcccttggtgctc 50660
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>gb|U95137.1|RNU95137 Rattus norvegicus Na+-Ca+ exchanger (NCX1) gene, exon 1-Ht
          Length = 3637

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 188 acttcttgcatggtactgtt 207
           ||||||||||||||||||||
Sbjct: 260 acttcttgcatggtactgtt 241


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,093,087
Number of Sequences: 3902068
Number of extensions: 6093087
Number of successful extensions: 111036
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110650
Number of HSP's gapped (non-prelim): 385
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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