Clone Information

BLAST Search Result

Clone Name	rbags14b02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	GLXR_ECOLI (P77161) 2-hydroxy-3-oxopropionate reductase (EC 1.1....	98	2e-20
2	YKWC_BACSU (O34948) Hypothetical oxidoreductase ykwC (EC 1.1.-.-)	95	2e-19
3	GARR_ECOLI (P0ABQ2) 2-hydroxy-3-oxopropionate reductase (EC 1.1....	93	7e-19
4	GARR_ECOL6 (P0ABQ3) 2-hydroxy-3-oxopropionate reductase (EC 1.1....	93	7e-19
5	Y229_SYNY3 (Q55702) Hypothetical oxidoreductase slr0229 (EC 1.1....	80	5e-15
6	YFJR_BACSU (O34969) Hypothetical oxidoreductase yfjR (EC 1.1.-.-)	79	2e-14
7	YCY3_SHEFR (O33730) Hypothetical oxidoreductase in cytochrome c3...	76	1e-13
8	Y1010_HAEIN (P44979) Hypothetical oxidoreductase HI1010 (EC 1.1....	74	4e-13
9	3HIDH_DROME (Q9V8M5) Probable 3-hydroxyisobutyrate dehydrogenase...	74	4e-13
10	MMSB_PSEAE (P28811) 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1...	72	1e-12
11	3HIDH_ARATH (Q9SUC0) Probable 3-hydroxyisobutyrate dehydrogenase...	72	2e-12
12	YGBJ_ECOLI (Q46888) Hypothetical oxidoreductase ygbJ (EC 1.1.-.-)	69	1e-11
13	YIHU_SALTY (Q9L7S0) Hypothetical oxidoreductase yihU (EC 1.1.-.-)	69	2e-11
14	3HIDH_RAT (P29266) 3-hydroxyisobutyrate dehydrogenase, mitochond...	68	3e-11
15	3HIDH_MOUSE (Q99L13) 3-hydroxyisobutyrate dehydrogenase, mitocho...	68	3e-11
16	MMSB_MYCTU (P63935) Probable 3-hydroxyisobutyrate dehydrogenase ...	67	5e-11
17	MMSB_MYCBO (P63936) Probable 3-hydroxyisobutyrate dehydrogenase ...	67	5e-11
18	YIHU_SHIFL (P0A9V9) Hypothetical oxidoreductase yihU (EC 1.1.-.-)	67	7e-11
19	YIHU_ECOLI (P0A9V8) Hypothetical oxidoreductase yihU (EC 1.1.-.-)	67	7e-11
20	3HIDH_HUMAN (P31937) 3-hydroxyisobutyrate dehydrogenase, mitocho...	63	8e-10
21	Y770_MYCTU (P71825) Hypothetical oxidoreductase Rv0770/MT0794 (E...	62	1e-09
22	3HIDH_CAEEL (Q9XTI0) Probable 3-hydroxyisobutyrate dehydrogenase...	58	2e-08
23	RPOB2_NOCFA (Q5YPE0) DNA-directed RNA polymerase beta chain 2 (E...	33	1.1
24	GATB_ANASP (Q8YX22) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe...	32	1.5
25	VILD_DICDI (Q8WQ85) Villidin	32	1.5
26	PITX1_RAT (Q99NA7) Pituitary homeobox 1	32	2.5
27	PITX1_MOUSE (P70314) Pituitary homeobox 1 (Homeobox protein P-OT...	32	2.5
28	PITX1_HUMAN (P78337) Pituitary homeobox 1 (Hindlimb expressed ho...	32	2.5
29	RP1_BOVIN (Q8MJ05) Oxygen-regulated protein 1 (Retinitis pigment...	31	3.2
30	PANX1_HUMAN (Q96RD7) Pannexin-1	31	4.2
31	HBL1_CAEEL (Q9XYD3) Hunchback-like protein	30	5.5
32	CAPD_STAAU (P39853) Capsular polysaccharide biosynthesis protein...	30	5.5
33	RPOB_STRT2 (Q5M2F5) DNA-directed RNA polymerase beta chain (EC 2...	30	7.2
34	RPOB_STRT1 (Q5LXV3) DNA-directed RNA polymerase beta chain (EC 2...	30	7.2
35	JSN1_YEAST (P47135) Protein JSN1 (Protein PUF1)	30	7.2
36	PITX1_CHICK (P56673) Pituitary homeobox 1 (cPTX1)	30	7.2
37	PANX1_MOUSE (Q9JIP4) Pannexin-1	30	7.2
38	EGL10_CAEEL (P49809) Regulator of G-protein signaling egl-10 (Eg...	30	9.4
39	RPOB_XYLFT (Q87A32) DNA-directed RNA polymerase beta chain (EC 2...	30	9.4
40	RPOB_XYLFA (Q9PA86) DNA-directed RNA polymerase beta chain (EC 2...	30	9.4
41	GATB_STRMU (Q8DSG6) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe...	30	9.4
42	ENG1_YEAST (P53753) Endo-1,3(4)-beta-glucanase 1 precursor (EC 3...	30	9.4
43	RPOB_XANOR (Q5GWS6) DNA-directed RNA polymerase beta chain (EC 2...	30	9.4
44	RPOB_XANCP (Q8PC56) DNA-directed RNA polymerase beta chain (EC 2...	30	9.4
45	RPOB_XANC5 (Q3BWZ1) DNA-directed RNA polymerase beta chain (EC 2...	30	9.4
46	RPOB_XANAC (Q8PNT0) DNA-directed RNA polymerase beta chain (EC 2...	30	9.4

>GLXR_ECOLI (P77161) 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)|
           (Tartronate semialdehyde reductase) (TSAR)
          Length = 292

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 55/192 (28%), Positives = 100/192 (52%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           S++    + + +  V + GG +++APVSG +  A +G L I+  GD+A+++ + P F++L
Sbjct: 93  SSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELL 152

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIANP 347
           GK    +G  G+G   K+   +I+   + A SE L  A K+G  P  +   L  G  ++ 
Sbjct: 153 GKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSR 212

Query: 346 MFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXXARSLGLG 167
           + ++ G  M++ ++NP F +   QKD+ LAL      A+++P             + G  
Sbjct: 213 ILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGS 272

Query: 166 DLDFSAVHEVLK 131
            LD SA+ + L+
Sbjct: 273 QLDHSALVQALE 284

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>YKWC_BACSU (O34948) Hypothetical oxidoreductase ykwC (EC 1.1.-.-)|
          Length = 288

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 51/153 (33%), Positives = 82/153 (53%)
 Frame = -2

Query: 679 KISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGE 500
           KI+EA K+K    ++APVSG    A++G L I+  G+K  ++  +P F ++G+   + G 
Sbjct: 105 KIAEAAKEKALFALDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGP 164

Query: 499 MGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSM 320
            G+G   K+   + + + M   +E +  A KSGL P+ +L  +  GA  +       P M
Sbjct: 165 AGSGQHTKMCNQIAIAAGMIGVAEAMAYAQKSGLEPENVLKSITTGAAGSWSLSNLAPRM 224

Query: 319 LQGSYNPAFPLKHQQKDMRLALSLGDENAVSMP 221
           LQG++ P F +KH  KDM +AL   +     MP
Sbjct: 225 LQGNFEPGFYVKHFIKDMGIALEEAELMGEEMP 257

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>GARR_ECOLI (P0ABQ2) 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)|
           (Tartronate semialdehyde reductase) (TSAR)
          Length = 294

 Score = 93.2 bits (230), Expect = 7e-19
 Identities = 56/187 (29%), Positives = 89/187 (47%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           S++    S +ISEA+K KG   ++APVSG +  A DG L ++  GDKA++D        +
Sbjct: 94  SSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAM 153

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIANP 347
                  GE+G G   KL   +I+   + A SE L LA K+G++P  +   +  G   + 
Sbjct: 154 AGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGST 213

Query: 346 MFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXXARSLGLG 167
           +   K P ++  ++ P F +    KD+  AL         +P+           R+ GLG
Sbjct: 214 VLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLG 273

Query: 166 DLDFSAV 146
             D SA+
Sbjct: 274 TADHSAL 280

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>GARR_ECOL6 (P0ABQ3) 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)|
           (Tartronate semialdehyde reductase) (TSAR)
          Length = 294

 Score = 93.2 bits (230), Expect = 7e-19
 Identities = 56/187 (29%), Positives = 89/187 (47%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           S++    S +ISEA+K KG   ++APVSG +  A DG L ++  GDKA++D        +
Sbjct: 94  SSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAM 153

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIANP 347
                  GE+G G   KL   +I+   + A SE L LA K+G++P  +   +  G   + 
Sbjct: 154 AGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGST 213

Query: 346 MFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXXARSLGLG 167
           +   K P ++  ++ P F +    KD+  AL         +P+           R+ GLG
Sbjct: 214 VLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLG 273

Query: 166 DLDFSAV 146
             D SA+
Sbjct: 274 TADHSAL 280

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>Y229_SYNY3 (Q55702) Hypothetical oxidoreductase slr0229 (EC 1.1.-.-)|
          Length = 290

 Score = 80.5 bits (197), Expect = 5e-15
 Identities = 42/149 (28%), Positives = 80/149 (53%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+    + +++  +K +G  F++APV+G    A +G L I+  GD + +++ +P    +
Sbjct: 99  STIGKTAAYELATNLKLQGLRFLDAPVTGGDVGAINGTLTIMVGGDISDFEEALPVLKSI 158

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIANP 347
           G+K    G  G+G  +KL   ++ G    A +E + L+++ G++P+ ++D    GA  + 
Sbjct: 159 GEKIVHCGPSGSGQAVKLCNQVLCGIHAIAAAEAIQLSEQLGIAPELVIDTCGSGAAGSW 218

Query: 346 MFKMKGPSMLQGSYNPAFPLKHQQKDMRL 260
                 P M +  + P F +KH  KD+RL
Sbjct: 219 ALTNLAPKMSEADFAPGFMVKHLLKDLRL 247

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>YFJR_BACSU (O34969) Hypothetical oxidoreductase yfjR (EC 1.1.-.-)|
          Length = 261

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 2/194 (1%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+    S K++ A  +KG  F+ APV G    A    L I+ AG         P  D L
Sbjct: 69  STISVEFSEKLAAAHAEKGQFFLAAPVLGRPDAAAKAALRIITAGPAEAKQAAKPLLDSL 128

Query: 526 GKKSFFLGEMGNGAK-MKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIAN 350
            ++ F +GE    A   K+ +N ++ SM+ A SE   + +K GL  +  L++       +
Sbjct: 129 SQQIFDVGEESKTANAAKISINFLLVSMLEALSESFLMMEKYGLEQKQFLEIAS-ALFGS 187

Query: 349 PMFKMKGPSMLQGSYNPA-FPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXXARSLG 173
           P+++  G  M +  + PA F +    KD  LAL+     + ++P+              G
Sbjct: 188 PVYQNYGTIMAEQKFEPAGFKMSLGLKDTNLALAAAKRVSANLPLAELAKSHFESGIEKG 247

Query: 172 LGDLDFSAVHEVLK 131
            GDLD++A+ + +K
Sbjct: 248 FGDLDWAALIKCIK 261

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>YCY3_SHEFR (O33730) Hypothetical oxidoreductase in cytochrome c3 5'region|
           (Fragment)
          Length = 194

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 45/162 (27%), Positives = 81/162 (50%)
 Frame = -2

Query: 703 TVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDILG 524
           T  A  + +I+  ++    AF++APVSG +  AE+G L ++  GD+A +D + P      
Sbjct: 1   TASADVAREIAAYIEPLNIAFLDAPVSGGQAGAENGALTVMMGGDQAHFDTVKPVISAYS 60

Query: 523 KKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIANPM 344
                LG +G G   K+V  + +  ++   +EGL  A  +GL    +++V+  G   +  
Sbjct: 61  CAEL-LGPVGAGQLTKMVNQICIAGVVQGLAEGLHFAKSAGLDGLKVIEVISKGRAQSWQ 119

Query: 343 FKMKGPSMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPV 218
            + +  +M QG Y+  F +   +KD+ +AL     N   +PV
Sbjct: 120 MENRYKTMWQGQYDFGFAIDWMRKDLGIALDEARRNGSHLPV 161

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>Y1010_HAEIN (P44979) Hypothetical oxidoreductase HI1010 (EC 1.1.-.-)|
          Length = 301

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 1/191 (0%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+ A  +  IS+ + + G   ++APVSG    A  G++ ++A+G K  ++ + P  D  
Sbjct: 100 STMAAQDAQIISQKLTELGLIMLDAPVSGGAAKALKGEMTVMASGSKQAFELLQPVLDAT 159

Query: 526 GKKSFFLG-EMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIAN 350
             K + +G E+G GA +K+V  ++ G  + A +E + LA K+G+    + DV+   A  +
Sbjct: 160 AAKVYNIGEEIGLGATVKIVHQLLAGVHIAAGAEAMALASKAGIPLDVMYDVVTNAAGNS 219

Query: 349 PMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXXARSLGL 170
            MF+ +   +++G Y P   +    KD+ L           + +          A + G 
Sbjct: 220 WMFENRMKHVVEGDYTPLSMVDIFVKDLGLVNDTAKSLHFPLHLASTAYSMFTEASNAGY 279

Query: 169 GDLDFSAVHEV 137
           G  D SAV ++
Sbjct: 280 GKEDDSAVIKI 290

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>3HIDH_DROME (Q9V8M5) Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           precursor (EC 1.1.1.31) (HIBADH)
          Length = 324

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 7/199 (3%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+       + + +  KG  F++APVSG    AE   L  +  G +A Y+ +    + +
Sbjct: 120 STISPDLVKSLQKKISAKGARFIDAPVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECM 179

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLD------- 368
           GKK    G  G G   KL  NM++   M   SE + LA + GL      ++++       
Sbjct: 180 GKKITHCGVYGMGQAAKLCNNMMLAISMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCW 239

Query: 367 LGAIANPMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXX 188
              I NP+  +   +     Y   F      KD+ LA  + + +   +P+          
Sbjct: 240 ASEIYNPVPGVCPSAPANRDYAGGFSSALITKDLGLASGVANASNSPIPLGSLAHKVYQS 299

Query: 187 ARSLGLGDLDFSAVHEVLK 131
               GLG+ DFS V++++K
Sbjct: 300 LCDKGLGNKDFSVVYDLMK 318

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>MMSB_PSEAE (P28811) 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (HIBADH)|
          Length = 298

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 7/170 (4%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+   T+ K++EA   KG   ++APVSG    A  G L  +  G    +    P  + +
Sbjct: 95  STIAPETARKVAEAAAAKGLTLLDAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENM 154

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIANP 347
           G+  F  G+ G G   K+  NM++G +M   +E L L  K+GL P  L +V+   +  N 
Sbjct: 155 GRNIFHAGDHGAGQVAKICNNMLLGILMAGTAEALALGVKNGLDPAVLSEVMKQSSGGNW 214

Query: 346 MFKMKGP-------SMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPV 218
              +  P       +     Y   F ++   KD+ LAL+       S P+
Sbjct: 215 ALNLYNPWPGVMPQAPASNGYAGGFQVRLMNKDLGLALANAQAVQASTPL 264

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>3HIDH_ARATH (Q9SUC0) Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           precursor (EC 1.1.1.31) (HIBADH)
          Length = 347

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 62/209 (29%), Positives = 87/209 (41%), Gaps = 22/209 (10%)
 Frame = -2

Query: 706 STVDAATSCKISEAV-----KQKGG-----AFVEAPVSGSKKPAEDGQLVILAAGDKALY 557
           ST+D  T+ KIS AV     K+K         ++APVSG    AE G L  +  G +  Y
Sbjct: 133 STIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAY 192

Query: 556 DDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLD 377
               P    +G+ S + G  GNG+  K+  N+ M   M   SE L L    G+S  TL +
Sbjct: 193 LAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTE 252

Query: 376 VLDLGA-------IANPMFKMKGPSMLQG-----SYNPAFPLKHQQKDMRLALSLGDENA 233
           VL+  +         NP+     P +++G      YN  F  K   KD+ LA +  +E  
Sbjct: 253 VLNTSSGRCWSSDAYNPV-----PGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVG 307

Query: 232 VSMPVXXXXXXXXXXARSLGLGDLDFSAV 146
              P+              G    DFS V
Sbjct: 308 HKSPLISKAQEIYKKMCEEGHETKDFSCV 336

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>YGBJ_ECOLI (Q46888) Hypothetical oxidoreductase ygbJ (EC 1.1.-.-)|
          Length = 302

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 46/191 (24%), Positives = 93/191 (48%), Gaps = 1/191 (0%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+ +A + +I+ A+       ++APVSG    A +G++ ++A+G    ++ + P  + +
Sbjct: 101 STIASADAQEIATALAGFDLEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAV 160

Query: 526 GKKSFFLG-EMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIAN 350
             K + +G E G G+ +K++  ++ G  + A +E + LA ++G+    + DV+   A  +
Sbjct: 161 AGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAGNS 220

Query: 349 PMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXXARSLGL 170
            MF+ +   ++ G Y P   +    KD+ L           +P+          A + G 
Sbjct: 221 WMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSASNAGY 280

Query: 169 GDLDFSAVHEV 137
           G  D SAV ++
Sbjct: 281 GKEDDSAVIKI 291

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>YIHU_SALTY (Q9L7S0) Hypothetical oxidoreductase yihU (EC 1.1.-.-)|
          Length = 298

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 2/194 (1%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+    +  +   ++ KG + ++ P+  +   A  G L++LA G     +   P    +
Sbjct: 95  STIHPLQTDNLIADMQSKGFSMMDVPIGRTSDNAITGTLLLLAGGTAEQVERATPVLMAM 154

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFS-EGLCLADKSGLSPQTLLDVLDLGAIAN 350
           G +    G  G G ++KL +N  M   +NA S E   L +  GLS    L V+   A   
Sbjct: 155 GNELVNTGGPGMGIRVKL-INNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGK 213

Query: 349 PMFKMKGPS-MLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXXARSLG 173
             F    P+ +++G  +PAF +    KD+ +AL + ++  V MP+          AR+ G
Sbjct: 214 GHFTTTWPNKVMKGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYNLARAAG 273

Query: 172 LGDLDFSAVHEVLK 131
            G  D+SA+ E ++
Sbjct: 274 RGREDWSAILEQVR 287

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>3HIDH_RAT (P29266) 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           precursor (EC 1.1.1.31) (HIBADH)
          Length = 335

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 7/199 (3%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+D + S ++++ V++ G  F++APVSG    A  G L  +  G +  +         +
Sbjct: 132 STIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCM 191

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGA---- 359
           G    + G +G+G   K+  NM++   M   +E + L  +SGL P+ L  +L++ +    
Sbjct: 192 GSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCW 251

Query: 358 ---IANPMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXX 188
                NP+  +        +Y   F      KD+ LA          + +          
Sbjct: 252 SSDTYNPVPGVMDGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRM 311

Query: 187 ARSLGLGDLDFSAVHEVLK 131
             S G    DFS+V + L+
Sbjct: 312 MCSKGYSKKDFSSVFQYLR 330

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>3HIDH_MOUSE (Q99L13) 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           precursor (EC 1.1.1.31) (HIBADH)
          Length = 335

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 7/199 (3%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+D + S ++++ V++ G  F++APVSG    A  G L  +  G +  +       + +
Sbjct: 132 STIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECM 191

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGA---- 359
           G    + G +G G   K+  NM++   M   +E + L  +SGL P+ L  +L++ +    
Sbjct: 192 GSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCW 251

Query: 358 ---IANPMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXX 188
                NP+  +        +Y   F      KD+ LA          + +          
Sbjct: 252 SSDTYNPVPGVMHGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRM 311

Query: 187 ARSLGLGDLDFSAVHEVLK 131
             S G    DFS+V + L+
Sbjct: 312 MCSKGYSKKDFSSVFQYLR 330

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>MMSB_MYCTU (P63935) Probable 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)|
           (HIBADH)
          Length = 294

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 54/200 (27%), Positives = 81/200 (40%), Gaps = 8/200 (4%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+    + ++    +  G   ++APVSG  K A    L  +  GD++      P  + +
Sbjct: 92  STISVTDAREVHALAESHGMLQLDAPVSGGVKGAAAATLAFMVGGDESTLRRARPVLEPM 151

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIAN- 350
             K    G  G G   K+  NM++     A +E   LA+K GLS Q+L DV+  GA  N 
Sbjct: 152 AGKIIHCGAAGAGQAAKVCNNMVLAVQQIAIAEAFVLAEKLGLSAQSLFDVI-TGATGNC 210

Query: 349 ----PMFKMKGP---SMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXX 191
                   + GP   S     + P F      KD+ LA+        + P+         
Sbjct: 211 WAVHTNCPVPGPVPTSPANNDFKPGFSTALMNKDLGLAMDAVAATGATAPLGSHAADIYA 270

Query: 190 XARSLGLGDLDFSAVHEVLK 131
              +    DLDFSAV   L+
Sbjct: 271 KF-AADHADLDFSAVIHTLR 289

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>MMSB_MYCBO (P63936) Probable 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)|
           (HIBADH)
          Length = 294

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 54/200 (27%), Positives = 81/200 (40%), Gaps = 8/200 (4%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+    + ++    +  G   ++APVSG  K A    L  +  GD++      P  + +
Sbjct: 92  STISVTDAREVHALAESHGMLQLDAPVSGGVKGAAAATLAFMVGGDESTLRRARPVLEPM 151

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIAN- 350
             K    G  G G   K+  NM++     A +E   LA+K GLS Q+L DV+  GA  N 
Sbjct: 152 AGKIIHCGAAGAGQAAKVCNNMVLAVQQIAIAEAFVLAEKLGLSAQSLFDVI-TGATGNC 210

Query: 349 ----PMFKMKGP---SMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXX 191
                   + GP   S     + P F      KD+ LA+        + P+         
Sbjct: 211 WAVHTNCPVPGPVPTSPANNDFKPGFSTALMNKDLGLAMDAVAATGATAPLGSHAADIYA 270

Query: 190 XARSLGLGDLDFSAVHEVLK 131
              +    DLDFSAV   L+
Sbjct: 271 KF-AADHADLDFSAVIHTLR 289

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>YIHU_SHIFL (P0A9V9) Hypothetical oxidoreductase yihU (EC 1.1.-.-)|
          Length = 298

 Score = 66.6 bits (161), Expect = 7e-11
 Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 2/194 (1%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+    + K+   ++ KG + ++ PV  +   A  G L++LA G     +   P    +
Sbjct: 95  STIHPLQTDKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAM 154

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFS-EGLCLADKSGLSPQTLLDVLDLGAIAN 350
           G +    G  G G ++KL+ N  M   +NA S E   L +   L     + V+   A   
Sbjct: 155 GSELINAGGPGMGIRVKLI-NNYMSIALNALSAEAAVLCEALNLPFDVAVKVMSGTAAGK 213

Query: 349 PMFKMKGPS-MLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXXARSLG 173
             F    P+ +L G  +PAF +    KD+ +AL + ++  V MP+          AR+ G
Sbjct: 214 GHFTTSWPNKVLSGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAG 273

Query: 172 LGDLDFSAVHEVLK 131
            G  D+SA+ E ++
Sbjct: 274 RGRQDWSAILEQVR 287

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>YIHU_ECOLI (P0A9V8) Hypothetical oxidoreductase yihU (EC 1.1.-.-)|
          Length = 298

 Score = 66.6 bits (161), Expect = 7e-11
 Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 2/194 (1%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+    + K+   ++ KG + ++ PV  +   A  G L++LA G     +   P    +
Sbjct: 95  STIHPLQTDKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAM 154

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFS-EGLCLADKSGLSPQTLLDVLDLGAIAN 350
           G +    G  G G ++KL+ N  M   +NA S E   L +   L     + V+   A   
Sbjct: 155 GSELINAGGPGMGIRVKLI-NNYMSIALNALSAEAAVLCEALNLPFDVAVKVMSGTAAGK 213

Query: 349 PMFKMKGPS-MLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXXARSLG 173
             F    P+ +L G  +PAF +    KD+ +AL + ++  V MP+          AR+ G
Sbjct: 214 GHFTTSWPNKVLSGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAG 273

Query: 172 LGDLDFSAVHEVLK 131
            G  D+SA+ E ++
Sbjct: 274 RGRQDWSAILEQVR 287

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>3HIDH_HUMAN (P31937) 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           precursor (EC 1.1.1.31) (HIBADH)
          Length = 336

 Score = 63.2 bits (152), Expect = 8e-10
 Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 7/199 (3%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+D A S ++++ V++ G  F++APVSG    A  G L  +  G +  +         +
Sbjct: 133 STIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCM 192

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGA---- 359
           G    + G +G G   K+  NM++   M   +E + L  + GL P+ L  +L++ +    
Sbjct: 193 GSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCW 252

Query: 358 ---IANPMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXX 188
                NP+  +        +Y   F      KD+ LA          + +          
Sbjct: 253 SSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRM 312

Query: 187 ARSLGLGDLDFSAVHEVLK 131
             + G    DFS+V + L+
Sbjct: 313 MCAKGYSKKDFSSVFQFLR 331

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>Y770_MYCTU (P71825) Hypothetical oxidoreductase Rv0770/MT0794 (EC 1.1.-.-)|
          Length = 295

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 14/177 (7%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILAAGDKALYDDMVPAFDIL 527
           ST+   T+  ++E +K +G   V+APVSG    A  G+L ++   D   +  +   F   
Sbjct: 100 STIADTTAVDLAEKLKPQGIHIVDAPVSGGAAAAAKGELAVMVGADDEAFQRIKEPFSRW 159

Query: 526 GKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIANP 347
                  GE G G +MKL  NM+      A +E   LA+  G      LD++ LG +   
Sbjct: 160 ASLLIHAGEPGAGTRMKLARNMLTFVSYAAAAEAQRLAEACG------LDLVALGKVVRH 213

Query: 346 MFKMKGPS---MLQGSYNPAFP-------LKHQ----QKDMRLALSLGDENAVSMPV 218
                G +   M + +  P  P       L+H     +KD+ LAL+LG+  +V +P+
Sbjct: 214 SDSFTGGAGAIMFRNTTAPMEPADPLRPLLEHTRGLGEKDLSLALALGEVVSVDLPL 270

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>3HIDH_CAEEL (Q9XTI0) Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           (EC 1.1.1.31) (HIBADH)
          Length = 299

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
 Frame = -2

Query: 706 STVDAATSCKISEAVKQKGGAFVEAPVSGSKKPAEDGQLVILA-AGDKALYDDMVPAFDI 530
           ST+D   S ++++A       +++AP+SG    A+   L  +  AG+ A +        +
Sbjct: 95  STIDQIVSLEVAQAAALLKAEYIDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSL 154

Query: 529 LGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLD 368
           +GK    LG +GNG   K+  NM++G  M A +E + L    GL  + L  +++
Sbjct: 155 MGKNIVNLGAVGNGTAAKICNNMLLGIQMVAVAETMNLGISMGLDAKALAGIVN 208

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>RPOB2_NOCFA (Q5YPE0) DNA-directed RNA polymerase beta chain 2 (EC 2.7.7.6)|
           (RNAP beta subunit 2) (Transcriptase beta chain 2) (RNA
           polymerase beta subunit 2)
          Length = 1163

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 11/142 (7%)
 Frame = -2

Query: 664 VKQKGGAFVEAPVSGSKKPAED-----GQLVILAAGDKALYDDMVPAFDILGKKSFFLGE 500
           + +K G  V  PV+GS    ED       LV L AGDK +     P    +  +   +  
Sbjct: 303 INKKLGIHVGEPVTGSVLTKEDIVTTIEYLVRLHAGDKTM---TAPGGVEVPVEVDDIDH 359

Query: 499 MGN------GAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFK 338
            GN      G  ++  + + +  M     E +   D   ++PQTL+++  + A     F 
Sbjct: 360 FGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFG 419

Query: 337 MKGPSMLQGSYNPAFPLKHQQK 272
               S      NP   L H+++
Sbjct: 420 TSQLSQFMDQNNPLSGLTHKRR 441

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>GATB_ANASP (Q8YX22) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 491

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = -2

Query: 559 YDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLL 380
           YD  V   D++  + F +  + +GA  K   N I   +    ++      + GL+P  L 
Sbjct: 332 YDTRVLTEDVIVSQYFEVA-IASGANPKAAANWITQDIAAYLNKQKLSITEIGLTPANLA 390

Query: 379 DV---LDLGAIANPMFKMKGPSMLQG 311
           DV   ++ G I+N   K K P +L G
Sbjct: 391 DVITRIETGKISNAQAKQKLPELLTG 416

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>VILD_DICDI (Q8WQ85) Villidin|
          Length = 1704

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +3

Query: 501 SPRKNDFFPSMSNAGTMSSYSALSPAARMTNWPSSAGFLLPETGASTKAPPFCLTASLIL 680
           S   N   P  S       +S LS     T+  SS GF  P   +ST  PP    + L +
Sbjct: 621 SESPNSTTPKSSTPTQTRHHSVLSRNPSYTSLKSSGGFSKPSPSSSTSTPPSTFASPLSI 680

Query: 681 QEVAAST 701
            + +++T
Sbjct: 681 AQTSSTT 687

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>PITX1_RAT (Q99NA7) Pituitary homeobox 1|
          Length = 315

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +3

Query: 486 APFPISPRKNDFFPSMSNAGTMSSYSALSPAARMTNWPSSAG 611
           AP P+S +   FF SMS   + S +SA S  + MT  PSS G
Sbjct: 191 APAPLSTKSFTFFNSMSPLSSQSMFSAPSSISSMT-MPSSMG 231

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>PITX1_MOUSE (P70314) Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary|
           OTX-related factor) (Hindlimb expressed homeobox protein
           backfoot) (Ptx1)
          Length = 315

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +3

Query: 486 APFPISPRKNDFFPSMSNAGTMSSYSALSPAARMTNWPSSAG 611
           AP P+S +   FF SMS   + S +SA S  + MT  PSS G
Sbjct: 191 APAPLSTKSFTFFNSMSPLSSQSMFSAPSSISSMT-MPSSMG 231

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>PITX1_HUMAN (P78337) Pituitary homeobox 1 (Hindlimb expressed homeobox protein|
           backfoot)
          Length = 314

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +3

Query: 486 APFPISPRKNDFFPSMSNAGTMSSYSALSPAARMTNWPSSAG 611
           AP P+S +   FF SMS   + S +SA S  + MT  PSS G
Sbjct: 190 APAPLSTKSFTFFNSMSPLSSQSMFSAPSSISSMT-MPSSMG 230

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>RP1_BOVIN (Q8MJ05) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1|
           protein homolog)
          Length = 2105

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +2

Query: 392 GAQPTFVSQTESLGESIHHTSHDHVDHQFHLCSISHLPQKERLL------PKYVKCRDHV 553
           G   T      S+G S   T  D + H+F  C ++ LP+ E+ +       K +K + HV
Sbjct: 620 GTDKTISKTPASVGNSTVTTRIDQLIHEFSHCGLTKLPENEKQISSSVASKKKMKSQQHV 679

Query: 554 I 556
           I
Sbjct: 680 I 680

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>PANX1_HUMAN (Q96RD7) Pannexin-1|
          Length = 426

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 419 TESLGESIHHTSHDHVDHQFHLCSISHLPQKERLLPKYVKCRDHVII*CLVAC 577
           TE+LG+S+   S  H  +      +        L+ KY+ CR   +I  L+AC
Sbjct: 176 TENLGQSLWEVSESHFKYPIVEQYLKTKKNSNNLIIKYISCRLLTLIIILLAC 228

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>HBL1_CAEEL (Q9XYD3) Hunchback-like protein|
          Length = 982

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 414  AKQSPSEKAFIILPMIMLTTSFIFAPFPISPRKNDFFPS-MSNAGTMSSYSALSPAA 581
            A  SPS+   +  P   L +S I AP PI+P+ N+F  S ++ A  +    A  P+A
Sbjct: 874  APHSPSDTTSV--PSPPLHSSSIVAPIPITPQPNEFLQSILAQASLLGPLLANRPSA 928

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>CAPD_STAAU (P39853) Capsular polysaccharide biosynthesis protein capD|
          Length = 599

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 567 RHYMMTWSLHLTYLGRSRSFW 505
           R Y +TW +HL  +G SR FW
Sbjct: 106 RLYFITWMMHLLLIGGSRLFW 126

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>RPOB_STRT2 (Q5M2F5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1193

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 21/116 (18%)
 Frame = -2

Query: 556 DDMVPAF---DILGKKSFFLG------------EMGNG---AKMKLVVNMI---MGSMMN 440
           DD V A    DIL + S+FL              +GN    A  +L+ N     +  M  
Sbjct: 374 DDKVRALTTADILAEMSYFLNLAEGIGKVDDIDHLGNRRVRAVGELLANQFRIGLARMER 433

Query: 439 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 272
              E + + D   L+PQ ++++  + A     F     S     +NP   L H+++
Sbjct: 434 NVRERMSVQDNEALTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRR 489

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>RPOB_STRT1 (Q5LXV3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1193

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 21/116 (18%)
 Frame = -2

Query: 556 DDMVPAF---DILGKKSFFLG------------EMGNG---AKMKLVVNMI---MGSMMN 440
           DD V A    DIL + S+FL              +GN    A  +L+ N     +  M  
Sbjct: 374 DDKVRALTTADILAEMSYFLNLAEGIGKVDDIDHLGNRRVRAVGELLANQFRIGLARMER 433

Query: 439 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 272
              E + + D   L+PQ ++++  + A     F     S     +NP   L H+++
Sbjct: 434 NVRERMSVQDNEALTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRR 489

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>JSN1_YEAST (P47135) Protein JSN1 (Protein PUF1)|
          Length = 1091

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -2

Query: 310 SYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXXARSLGLGDLDFSAVHEVLK 131
           S +  FPL+HQQ  +  A++L   +  ++             R+L +  ++FS+V   +K
Sbjct: 343 SISNVFPLQHQQPQLNNAINLTSTSLATLCSKYGEVISARTLRNLNMALVEFSSVESAVK 402

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>PITX1_CHICK (P56673) Pituitary homeobox 1 (cPTX1)|
          Length = 311

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 23/73 (31%), Positives = 31/73 (42%)
 Frame = +3

Query: 393 GLNPLLSAKQSPSEKAFIILPMIMLTTSFIFAPFPISPRKNDFFPSMSNAGTMSSYSALS 572
           G  P  S    P +  +   P     T  +  P P+S +   FF SMS   + S +SA S
Sbjct: 158 GYVPQFSGLMQPYDDMYAGYPYNNWATKSL-TPAPLSTKSFTFFNSMSPLSSQSMFSAPS 216

Query: 573 PAARMTNWPSSAG 611
             + M N PS  G
Sbjct: 217 SISSM-NMPSGMG 228

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>PANX1_MOUSE (Q9JIP4) Pannexin-1|
          Length = 426

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 371 QDIKKRLGAQPTFVSQTESLGESIHHTSHDHVDHQFHLCSISHLPQKERLLPKYVKCRDH 550
           +D+  R G  P  V  TE++G+S+   S  H  +      +        L+ KY+ CR  
Sbjct: 161 RDLDLRDGPGPPGV--TENVGQSLWEISESHFKYPIVEQYLKTKKNSSHLIMKYISCRLV 218

Query: 551 VII*CLVAC 577
             +  L+AC
Sbjct: 219 TFVVILLAC 227

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>EGL10_CAEEL (P49809) Regulator of G-protein signaling egl-10 (Egg-laying|
           defective protein 10)
          Length = 555

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 501 SPRKNDFFPSMSNAGTMSSYSALSPAARMTNWPSSA 608
           SPRKND  PS S+ G   S S+ +     T+ PS++
Sbjct: 266 SPRKNDQEPSTSSGGESPSTSSAAAGTATTSAPSTS 301

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>RPOB_XYLFT (Q87A32) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1388

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -2

Query: 439 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 272
           A  E L +A+  GL+PQ L++   + A     F     S      NP   + H+++
Sbjct: 506 AVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRR 561

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>RPOB_XYLFA (Q9PA86) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1388

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -2

Query: 439 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 272
           A  E L +A+  GL+PQ L++   + A     F     S      NP   + H+++
Sbjct: 506 AVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRR 561

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>GATB_STRMU (Q8DSG6) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 479

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 514 FFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGA 359
           FF   +  GA  K V N + G +    +      D+ GL+P+ L ++L L A
Sbjct: 328 FFESALAQGADAKAVSNWLQGDVAQYLNTENQTIDQIGLTPENLTEMLQLVA 379

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>ENG1_YEAST (P53753) Endo-1,3(4)-beta-glucanase 1 precursor (EC 3.2.1.6)|
           (Endo-1,4-beta-glucanase 1) (Endo-1,3-beta-glucanase 1)
           (Laminarinase-1) (Daughter specific expression protein
           4)
          Length = 1117

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 28/93 (30%), Positives = 45/93 (48%)
 Frame = +3

Query: 375 TSRSVWGLNPLLSAKQSPSEKAFIILPMIMLTTSFIFAPFPISPRKNDFFPSMSNAGTMS 554
           TS S   ++PL++   S S +   I+P  + +   I+    IS R N      + A    
Sbjct: 191 TSVSKGTIDPLVTQMPSYSSQETKIIPSSLTSNKTIYT---ISVRTN-----AATATGED 242

Query: 555 SYSALSPAARMTNWPSSAGFLLPETGASTKAPP 653
           S+ A +PA+    +PS++   L +T AST A P
Sbjct: 243 SFIASTPASSTLFYPSNSTQDLVQTLASTTASP 275

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>RPOB_XANOR (Q5GWS6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1383

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -2

Query: 439 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 272
           A  E L +A+  GL+PQ L++   + A     F     S      NP   + H+++
Sbjct: 502 AVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRR 557

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>RPOB_XANCP (Q8PC56) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1387

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -2

Query: 439 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 272
           A  E L +A+  GL+PQ L++   + A     F     S      NP   + H+++
Sbjct: 506 AVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRR 561

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>RPOB_XANC5 (Q3BWZ1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1383

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -2

Query: 439 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 272
           A  E L +A+  GL+PQ L++   + A     F     S      NP   + H+++
Sbjct: 502 AVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRR 557

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>RPOB_XANAC (Q8PNT0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1383

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -2

Query: 439 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 272
           A  E L +A+  GL+PQ L++   + A     F     S      NP   + H+++
Sbjct: 502 AVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRR 557


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,636,064
Number of Sequences: 219361
Number of extensions: 2415866
Number of successful extensions: 6197
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 5930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6185
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result