| Clone Name | rbags13m02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473375.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1389 Score = 398 bits (201), Expect = e-108 Identities = 412/480 (85%), Gaps = 3/480 (0%) Strand = Plus / Minus Query: 182 tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 241 |||||| |||||||| ||||| |||||||||| ||| |||| ||||| ||||||||||| Sbjct: 1389 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 1330 Query: 242 gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 301 || ||| ||| |||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 1329 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 1270 Query: 302 cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 361 || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| || Sbjct: 1269 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 1210 Query: 362 tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggtga 421 |||||| ||||| ||||||||||| || | |||| || |||||||| |||||||| || Sbjct: 1209 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcaggcga 1150 Query: 422 ttccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttcttc 481 ||||||||||| ||||||||||||||||||||||| || ||||| || ||||||||||| Sbjct: 1149 ttccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttcttc 1090 Query: 482 cagataaaactgaatccagttatggaatcctgagacctcggtctctccttgt-ctc--tg 538 ||| |||||||||||||| |||||||||||||||||||| ||||||| ||| ||| | Sbjct: 1089 caggtaaaactgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcg 1030 Query: 539 ttcctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccaca 598 | |||| ||||||||||| ||||||||||||||||||||||||| |||||| | |||| Sbjct: 1029 tcccttgatctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacc 970 Query: 599 tcttccatacaaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 658 ||||||||||||| ||||| || |||||||||||| ||||||||| ||||||||||| Sbjct: 969 tcttccatacaaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 910
>dbj|AK068610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155A07, full insert sequence Length = 1837 Score = 398 bits (201), Expect = e-108 Identities = 412/480 (85%), Gaps = 3/480 (0%) Strand = Plus / Minus Query: 182 tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 241 |||||| |||||||| ||||| |||||||||| ||| |||| ||||| ||||||||||| Sbjct: 1581 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 1522 Query: 242 gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 301 || ||| ||| |||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 1521 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 1462 Query: 302 cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 361 || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| || Sbjct: 1461 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 1402 Query: 362 tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggtga 421 |||||| ||||| ||||||||||| || | |||| || |||||||| |||||||| || Sbjct: 1401 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcaggcga 1342 Query: 422 ttccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttcttc 481 ||||||||||| ||||||||||||||||||||||| || ||||| || ||||||||||| Sbjct: 1341 ttccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttcttc 1282 Query: 482 cagataaaactgaatccagttatggaatcctgagacctcggtctctccttgt-ctc--tg 538 ||| |||||||||||||| |||||||||||||||||||| ||||||| ||| ||| | Sbjct: 1281 caggtaaaactgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcg 1222 Query: 539 ttcctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccaca 598 | |||| ||||||||||| ||||||||||||||||||||||||| |||||| | |||| Sbjct: 1221 tcccttgatctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacc 1162 Query: 599 tcttccatacaaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 658 ||||||||||||| ||||| || |||||||||||| ||||||||| ||||||||||| Sbjct: 1161 tcttccatacaaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 1102
>gb|AY224498.1| Oryza sativa (japonica cultivar-group) isolate 31120 putative serine protease-like protein mRNA, partial cds Length = 910 Score = 394 bits (199), Expect = e-106 Identities = 410/478 (85%), Gaps = 3/478 (0%) Strand = Plus / Minus Query: 184 agttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcacttga 243 |||| |||||||| ||||| |||||||||| ||| |||| ||||| ||||||||||||| Sbjct: 910 agttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcacttga 851 Query: 244 cgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagcaca 303 ||| ||| |||||||||||| || || |||||||| |||||||||||||||||||| | Sbjct: 850 tgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagcaga 791 Query: 304 gtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactgatt 363 | ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| |||| Sbjct: 790 gcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccgatt 731 Query: 364 tcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggtgatt 423 |||| ||||| ||||||||||| || | |||| || |||||||| |||||||| |||| Sbjct: 730 tcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcaggcgatt 671 Query: 424 ccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttcttcca 483 ||||||||| ||||||||||||||||||||||| || ||||| || ||||||||||||| Sbjct: 670 ccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttcttcca 611 Query: 484 gataaaactgaatccagttatggaatcctgagacctcggtctctccttgt-ctc--tgtt 540 | |||||||||||||| |||||||||||||||||||| ||||||| ||| ||| || Sbjct: 610 ggtaaaactgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcgtc 551 Query: 541 cctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacatc 600 |||| ||||||||||| ||||||||||||||||||||||||| |||||| | |||| || Sbjct: 550 ccttgatctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacctc 491 Query: 601 ttccatacaaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 658 ||||||||||| ||||| || |||||||||||| ||||||||| ||||||||||| Sbjct: 490 ttccatacaaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 433
>gb|AY110353.1| Zea mays CL9084_1 mRNA sequence Length = 668 Score = 387 bits (195), Expect = e-104 Identities = 371/432 (85%) Strand = Plus / Plus Query: 180 aatcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcac 239 |||||||||||||||||||||||| |||| ||||| |||||||| |||| ||||||||| Sbjct: 228 aatcagttctctgcaatgggaaaggctgatccaattttgttgttccccaatcggtagcac 287 Query: 240 ttgacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaag 299 ||||||||||| ||||||||||||||||||| |||||||| |||||||| | | Sbjct: 288 ttgacgttcacactgtacgggccaatatcgacgcggttatcttcccctccaacnnnnnng 347 Query: 300 cacagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatact 359 |||| ||||||||||| | ||| |||||||| || || |||||||| | ||| |||||| Sbjct: 348 cacaacgtgtagagtgcaacctcaaactcaggactgacgccaatcaacgtgctggatact 407 Query: 360 gatttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggt 419 ||||||||||| |||||||||||||| || || ||||| | ||| |||| |||||||| Sbjct: 408 gatttcagcacgccatgccactcaaactgaacagtcagcagctgtatctctgaatcaggc 467 Query: 420 gattccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttct 479 ||||| ||||| || ||||| ||||| ||||||||||| || |||||||||||||||||| Sbjct: 468 gattcaccacggcgccttggaaatatataaccttggtaatccacatttcccttggcttct 527 Query: 480 tccagataaaactgaatccagttatggaatcctgagacctcggtctctccttgtctctgt 539 ||||| ||||||||||||||||||||||| ||||| ||||| |||| ||||| | | || Sbjct: 528 tccaggtaaaactgaatccagttatggaagcctgatacctcactctccccttgnccccgt 587 Query: 540 tcctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacat 599 | || |||||||||||||||||||||||||| |||||||||||||||||||| |||| | Sbjct: 588 cctttgatctcaccaacaaacacatgctcaaaggcagaagagcagctagagttgccacct 647 Query: 600 cttccatacaaa 611 |||||||||||| Sbjct: 648 cttccatacaaa 659
>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence Length = 140449 Score = 184 bits (93), Expect = 2e-43 Identities = 201/237 (84%) Strand = Plus / Minus Query: 182 tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 241 |||||| |||||||| ||||| |||||||||| ||| |||| ||||| ||||||||||| Sbjct: 110640 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 110581 Query: 242 gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 301 || ||| ||| |||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 110580 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 110521 Query: 302 cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 361 || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| || Sbjct: 110520 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 110461 Query: 362 tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcagg 418 |||||| ||||| ||||||||||| || | |||| || |||||||| |||||||| Sbjct: 110460 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcagg 110404 Score = 135 bits (68), Expect = 2e-28 Identities = 147/171 (85%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 491 ctgaatccagttatggaatcctgagacctcggtctctccttgtc-tct--gttcctttat 547 ||||||||| |||||||||||||||||||| ||||||| |||| || || |||| || Sbjct: 110164 ctgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcgtcccttgat 110105 Query: 548 ctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacatcttccata 607 ||||||||| ||||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 110104 ctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacctcttccata 110045 Query: 608 caaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 658 |||| ||||| || |||||||||||| ||||||||| ||||||||||| Sbjct: 110044 caaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 109994 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 420 gattccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttct 479 ||||||||||||| ||||||||||||||||||||||| || ||||| || ||||||||| Sbjct: 110317 gattccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttct 110258 Query: 480 tccagataaaactg 493 ||||| |||||||| Sbjct: 110257 tccaggtaaaactg 110244
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 184 bits (93), Expect = 2e-43 Identities = 201/237 (84%) Strand = Plus / Minus Query: 182 tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 241 |||||| |||||||| ||||| |||||||||| ||| |||| ||||| ||||||||||| Sbjct: 27167997 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 27167938 Query: 242 gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 301 || ||| ||| |||||||||||| || || |||||||| |||||||||||||||||||| Sbjct: 27167937 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 27167878 Query: 302 cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 361 || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| || Sbjct: 27167877 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 27167818 Query: 362 tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcagg 418 |||||| ||||| ||||||||||| || | |||| || |||||||| |||||||| Sbjct: 27167817 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcagg 27167761 Score = 135 bits (68), Expect = 2e-28 Identities = 147/171 (85%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 491 ctgaatccagttatggaatcctgagacctcggtctctccttgtc-tct--gttcctttat 547 ||||||||| |||||||||||||||||||| ||||||| |||| || || |||| || Sbjct: 27167521 ctgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcgtcccttgat 27167462 Query: 548 ctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacatcttccata 607 ||||||||| ||||||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 27167461 ctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacctcttccata 27167402 Query: 608 caaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 658 |||| ||||| || |||||||||||| ||||||||| ||||||||||| Sbjct: 27167401 caaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 27167351 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 420 gattccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttct 479 ||||||||||||| ||||||||||||||||||||||| || ||||| || ||||||||| Sbjct: 27167674 gattccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttct 27167615 Query: 480 tccagataaaactg 493 ||||| |||||||| Sbjct: 27167614 tccaggtaaaactg 27167601
>gb|BT000202.1| Arabidopsis thaliana putative serine protease-like protein (At4g17100) mRNA, complete cds Length = 1361 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 441 aatatgtaaccttggtagtcgacatttcccttggcttcttccagataaaactgaatccag 500 ||||| || ||||| || || ||| |||| |||||||| |||| |||||||||| |||| Sbjct: 1046 aatatatagccttgataatctacagttcctttggcttcctccaagtaaaactgaagccag 987 Query: 501 ttatggaatcctgagac 517 ||||||||||| ||||| Sbjct: 986 ttatggaatccagagac 970 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 546 atctcaccaacaaacacatgctcaaatgcagaaga 580 |||||||| ||||| ||||||||||| |||||||| Sbjct: 947 atctcacctacaaagacatgctcaaacgcagaaga 913
>gb|AY093205.1| Arabidopsis thaliana putative serine protease-like protein (At4g17100) mRNA, complete cds Length = 1685 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 441 aatatgtaaccttggtagtcgacatttcccttggcttcttccagataaaactgaatccag 500 ||||| || ||||| || || ||| |||| |||||||| |||| |||||||||| |||| Sbjct: 1191 aatatatagccttgataatctacagttcctttggcttcctccaagtaaaactgaagccag 1132 Query: 501 ttatggaatcctgagac 517 ||||||||||| ||||| Sbjct: 1131 ttatggaatccagagac 1115 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 546 atctcaccaacaaacacatgctcaaatgcagaaga 580 |||||||| ||||| ||||||||||| |||||||| Sbjct: 1092 atctcacctacaaagacatgctcaaacgcagaaga 1058
>gb|AY813710.1| Schistosoma japonicum SJCHGC05913 protein mRNA, complete cds Length = 1480 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 549 tcaccaacaaacacatgctcaaatgcagaaga 580 ||||||||||||||||| || ||||||||||| Sbjct: 1052 tcaccaacaaacacatgttcgaatgcagaaga 1021
>emb|Z97342.2|ATFCA7 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 7 Length = 201471 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 546 atctcaccaacaaacacatgctcaaatgcagaaga 580 |||||||| ||||| ||||||||||| |||||||| Sbjct: 173588 atctcacctacaaagacatgctcaaacgcagaaga 173622
>emb|AL161545.2|ATCHRIV45 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 45 Length = 199548 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 546 atctcaccaacaaacacatgctcaaatgcagaaga 580 |||||||| ||||| ||||||||||| |||||||| Sbjct: 159417 atctcacctacaaagacatgctcaaacgcagaaga 159451
>emb|BX813846.1|CNS0ABZO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB42ZD09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1706 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 546 atctcaccaacaaacacatgctcaaatgcagaaga 580 |||||||| ||||| ||||||||||| |||||||| Sbjct: 738 atctcacctacaaagacatgctcaaacgcagaaga 772
>ref|XM_783872.1| PREDICTED: Strongylocentrotus purpuratus similar to Placental protein 11 precursor (PP11) (LOC583987), mRNA Length = 960 Score = 44.1 bits (22), Expect = 0.58 Identities = 31/34 (91%) Strand = Plus / Minus Query: 547 tctcaccaacaaacacatgctcaaatgcagaaga 580 ||||||| ||||||||||||||||| ||||||| Sbjct: 538 tctcacctacaaacacatgctcaaacccagaaga 505
>emb|AL646042.14| Mouse DNA sequence from clone RP23-70A15 on chromosome 11 Contains the 5' end of the Ulk2 gene for Unc-51 like kinase 2 (C. elegans), two novel genes (A530017D24Rik, D630015H07), the Akap10 gene for A kinase (PRKA) anchor protein 10, the 5' end of the gene for a novel protein similar to human sperm antigen HCMOGT-1 (B230396K10Rik) and three CpG islands, complete sequence Length = 159693 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 3 tttggtgctgtatacttgtaat 24 |||||||||||||||||||||| Sbjct: 647 tttggtgctgtatacttgtaat 668
>emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on chromosome 11 Contains the 3' end of the Ulk2 gene for Unc-51 like kinase 2 (C. elegans), the Prpsap2 gene for phosphoribosyl pyrophosphate synthetase-associated protein 2, the gene for a novel sodium/glucose cotransporter protein, the gene for a novel protein (2310040C09Rik), the Grap gene for GRB2-related adaptor protein and a CpG island, complete sequence Length = 186359 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 3 tttggtgctgtatacttgtaat 24 |||||||||||||||||||||| Sbjct: 1354 tttggtgctgtatacttgtaat 1333
>emb|AL645634.6| Human DNA sequence from clone RP11-402L1 on chromosome 10 Contains an adenylyl cyclase-associated protein 1 (CAP 1) pseudogene, a novel zinc finger protein gene (LOC220992), three novel genes, the ZNF32 gene for zinc finger protein 32 (KOX30), the ZNF32OS1 gene for zinc finger protein 32 opposite strand 1, the ZNF32OS2 gene for zinc finger protein 32 opposite strand 2, a ribosomal protein L21 (RPL21) pseudogene and three CpG islands, complete sequence Length = 80106 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 acatttcccttggcttcttcc 482 ||||||||||||||||||||| Sbjct: 71300 acatttcccttggcttcttcc 71320
>gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosome 12, complete sequence Length = 151373 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 527 tccttgtctctgttcctttatctc 550 |||||||||||||| ||||||||| Sbjct: 102066 tccttgtctctgtttctttatctc 102043
>ref|XM_814587.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507023.220) partial mRNA Length = 13521 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 ttcctttatctcaccaacaa 558 |||||||||||||||||||| Sbjct: 13122 ttcctttatctcaccaacaa 13103
>gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complete sequence Length = 205784 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 527 tccttgtctctgttcctttatctc 550 |||||||||||||| ||||||||| Sbjct: 195917 tccttgtctctgtttctttatctc 195940
>ref|XM_805490.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509171.100) partial mRNA Length = 1911 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 ttcctttatctcaccaacaa 558 |||||||||||||||||||| Sbjct: 1512 ttcctttatctcaccaacaa 1493
>ref|XM_662168.1| Cryptosporidium hominis TU502 DNA-directed RNA polymerase II/III subunit (Chro.60382) partial mRNA Length = 5610 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 agttctctgcaatgggaaag 203 |||||||||||||||||||| Sbjct: 122 agttctctgcaatgggaaag 141
>emb|AL845454.6| Human DNA sequence from clone DAQB-90C11 on chromosome 6 Contains HLA-H for major histocompatibility complex, class I, H (pseudogene), HLA-16 pseudogene, HCP5P6 for HLA complex P5 pseudogene 6, HCG4P6 for HLA complex group 4 pseudogene 6, HLA-K for major histocompatibility complex, class I, K, HLA-21 pseudogene, HLA-A for major histocompatibility complex, class I, A, HCP5P3 for HLA complex P5 pseudogene 3, HLA-80 pseudogene, MICD for MHC class I polypeptide-related sequence D, HCG9 for HLA complex group 9, HCP5P2 for HLA complex P5 pseudogene 2, HLA-J for major histocompatibility complex, class I, J (pseudogene), HCG8 for HLA complex group 8, 5' end of C6orf12 for chromosome 6 open reading frame 12 and five CpG islands, complete sequence Length = 159427 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 530 ttgtctctgttcctttatctcacc 553 ||||||||||||||||| |||||| Sbjct: 87524 ttgtctctgttcctttacctcacc 87501
>emb|BX538352.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 3/4 Length = 293050 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 agttctctgcaatgggaaag 203 |||||||||||||||||||| Sbjct: 33590 agttctctgcaatgggaaag 33571
>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the 5' end of the gene for a novel protein (330000P08Rik) (Luc7a), the gene for a novel protein (5530600A18Rik), the Abcc3 gene for ATP-binding cassette sub-family C (CFTR/MRP) member 3, the Cacna1g gene for calcium channel voltage-dependent T type alpha 1G subunit, the 3' end of the Tisp78 gene for transcript increased in spermiogenesis 78 and one CpG island, complete sequence Length = 161978 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 gttaccacatcttccataca 609 |||||||||||||||||||| Sbjct: 85786 gttaccacatcttccataca 85805
>emb|CR759762.5| Human DNA sequence from clone DAMC-190N15 on chromosome 6, complete sequence Length = 40072 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 530 ttgtctctgttcctttatctcacc 553 ||||||||||||||||| |||||| Sbjct: 12922 ttgtctctgttcctttacctcacc 12899
>emb|CR388220.8| Human DNA sequence from clone DADB-123D8 on chromosome 6, complete sequence Length = 131368 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 530 ttgtctctgttcctttatctcacc 553 ||||||||||||||||| |||||| Sbjct: 113007 ttgtctctgttcctttacctcacc 112984
>gb|AC113348.2| Homo sapiens chromosome 5 clone CTD-2537M22, complete sequence Length = 80723 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 624 gatgtcagcattgccttgaa 643 |||||||||||||||||||| Sbjct: 16201 gatgtcagcattgccttgaa 16220
>ref|XM_627674.1| Cryptosporidium parvum Iowa II DNA-directed RNA polymerase III C1 subunit (cgd6_3290), partial mRNA Length = 5616 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 agttctctgcaatgggaaag 203 |||||||||||||||||||| Sbjct: 122 agttctctgcaatgggaaag 141
>gb|AF529557.1| Acipenser fulvescens clone AfuG218 microsatellite sequence Length = 458 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 aactgaatccagttatggaa 508 |||||||||||||||||||| Sbjct: 372 aactgaatccagttatggaa 353
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 530 ttgtctctgttcctttatctcacc 553 ||||||||||||||||| |||||| Sbjct: 1531971 ttgtctctgttcctttacctcacc 1531994
>emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chromosome 2, complete sequence Length = 188464 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 609 aaagtaaaccaaagggatgt 628 |||||||||||||||||||| Sbjct: 161809 aaagtaaaccaaagggatgt 161828
>gb|AF055066.1|AF055066 Homo sapiens MHC class 1 region Length = 319486 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 530 ttgtctctgttcctttatctcacc 553 ||||||||||||||||| |||||| Sbjct: 86715 ttgtctctgttcctttacctcacc 86738
>ref|XM_311128.2| Anopheles gambiae str. PEST ENSANGP00000017337 (ENSANGG00000014848), partial mRNA Length = 658 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 tgtagagtgccagctcgaactcag 330 |||||||||||||||||| ||||| Sbjct: 79 tgtagagtgccagctcgagctcag 56
>gb|AC161018.4| Pan troglodytes BAC clone CH251-345F11 from chromosome unknown, complete sequence Length = 153379 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 accaacagtgtaaatctcac 103 |||||||||||||||||||| Sbjct: 22400 accaacagtgtaaatctcac 22381
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 548 ctcaccaacaaacacatgctcaaa 571 ||||| |||||||||||||||||| Sbjct: 1523477 ctcacaaacaaacacatgctcaaa 1523454
>emb|AJ342601.1|HSA342601 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NA10C Length = 605 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 aagggaaaagataaaaaccg 129 |||||||||||||||||||| Sbjct: 602 aagggaaaagataaaaaccg 583 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,993,745 Number of Sequences: 3902068 Number of extensions: 5993745 Number of successful extensions: 141779 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141614 Number of HSP's gapped (non-prelim): 162 length of query: 658 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 635 effective length of database: 17,143,297,704 effective search space: 10885994042040 effective search space used: 10885994042040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)