ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13m02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473375.1| Oryza sativa (japonica cultivar-group), predic... 398 e-108
2dbj|AK068610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 398 e-108
3gb|AY224498.1| Oryza sativa (japonica cultivar-group) isolate 31... 394 e-106
4gb|AY110353.1| Zea mays CL9084_1 mRNA sequence 387 e-104
5emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4,... 184 2e-43
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
7gb|BT000202.1| Arabidopsis thaliana putative serine protease-lik... 58 4e-05
8gb|AY093205.1| Arabidopsis thaliana putative serine protease-lik... 58 4e-05
9gb|AY813710.1| Schistosoma japonicum SJCHGC05913 protein mRNA, c... 48 0.037
10emb|Z97342.2|ATFCA7 Arabidopsis thaliana DNA chromosome 4, ESSA ... 46 0.15
11emb|AL161545.2|ATCHRIV45 Arabidopsis thaliana DNA chromosome 4, ... 46 0.15
12emb|BX813846.1|CNS0ABZO Arabidopsis thaliana Full-length cDNA Co... 46 0.15
13ref|XM_783872.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.58
14emb|AL646042.14| Mouse DNA sequence from clone RP23-70A15 on chr... 44 0.58
15emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on ch... 44 0.58
16emb|AL645634.6| Human DNA sequence from clone RP11-402L1 on chro... 42 2.3
17gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosom... 40 9.0
18ref|XM_814587.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.0
19gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complet... 40 9.0
20ref|XM_805490.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.0
21ref|XM_662168.1| Cryptosporidium hominis TU502 DNA-directed RNA ... 40 9.0
22emb|AL845454.6| Human DNA sequence from clone DAQB-90C11 on chro... 40 9.0
23emb|BX538352.1| Cryptosporidium parvum chromosome 6, complete se... 40 9.0
24emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chro... 40 9.0
25emb|CR759762.5| Human DNA sequence from clone DAMC-190N15 on chr... 40 9.0
26emb|CR388220.8| Human DNA sequence from clone DADB-123D8 on chro... 40 9.0
27gb|AC113348.2| Homo sapiens chromosome 5 clone CTD-2537M22, comp... 40 9.0
28ref|XM_627674.1| Cryptosporidium parvum Iowa II DNA-directed RNA... 40 9.0
29gb|AF529557.1| Acipenser fulvescens clone AfuG218 microsatellite... 40 9.0
30dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co... 40 9.0
31emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chr... 40 9.0
32gb|AF055066.1|AF055066 Homo sapiens MHC class 1 region 40 9.0
33ref|XM_311128.2| Anopheles gambiae str. PEST ENSANGP00000017337 ... 40 9.0
34gb|AC161018.4| Pan troglodytes BAC clone CH251-345F11 from chrom... 40 9.0
35emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 9.0
36emb|AJ342601.1|HSA342601 Homo sapiens genomic sequence surroundi... 40 9.0

>ref|XM_473375.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1389

 Score =  398 bits (201), Expect = e-108
 Identities = 412/480 (85%), Gaps = 3/480 (0%)
 Strand = Plus / Minus

                                                                        
Query: 182  tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 241
            |||||| |||||||| |||||  |||||||||| ||| |||| ||||| |||||||||||
Sbjct: 1389 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 1330

                                                                        
Query: 242  gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 301
            || ||| |||  |||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct: 1329 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 1270

                                                                        
Query: 302  cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 361
             || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| ||
Sbjct: 1269 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 1210

                                                                        
Query: 362  tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggtga 421
            |||||| ||||| ||||||||||| || |  |||| ||  |||||||| |||||||| ||
Sbjct: 1209 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcaggcga 1150

                                                                        
Query: 422  ttccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttcttc 481
            |||||||||||  ||||||||||||||||||||||| || ||||| || |||||||||||
Sbjct: 1149 ttccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttcttc 1090

                                                                        
Query: 482  cagataaaactgaatccagttatggaatcctgagacctcggtctctccttgt-ctc--tg 538
            ||| |||||||||||||| ||||||||||||||||||||  ||||||| ||| |||   |
Sbjct: 1089 caggtaaaactgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcg 1030

                                                                        
Query: 539  ttcctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccaca 598
            | |||| ||||||||||| ||||||||||||||||||||||||| ||||||  | |||| 
Sbjct: 1029 tcccttgatctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacc 970

                                                                        
Query: 599  tcttccatacaaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 658
            |||||||||||||   ||||| || ||||||||||||  ||||||||| |||||||||||
Sbjct: 969  tcttccatacaaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 910



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>dbj|AK068610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155A07, full
            insert sequence
          Length = 1837

 Score =  398 bits (201), Expect = e-108
 Identities = 412/480 (85%), Gaps = 3/480 (0%)
 Strand = Plus / Minus

                                                                        
Query: 182  tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 241
            |||||| |||||||| |||||  |||||||||| ||| |||| ||||| |||||||||||
Sbjct: 1581 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 1522

                                                                        
Query: 242  gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 301
            || ||| |||  |||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct: 1521 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 1462

                                                                        
Query: 302  cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 361
             || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| ||
Sbjct: 1461 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 1402

                                                                        
Query: 362  tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggtga 421
            |||||| ||||| ||||||||||| || |  |||| ||  |||||||| |||||||| ||
Sbjct: 1401 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcaggcga 1342

                                                                        
Query: 422  ttccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttcttc 481
            |||||||||||  ||||||||||||||||||||||| || ||||| || |||||||||||
Sbjct: 1341 ttccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttcttc 1282

                                                                        
Query: 482  cagataaaactgaatccagttatggaatcctgagacctcggtctctccttgt-ctc--tg 538
            ||| |||||||||||||| ||||||||||||||||||||  ||||||| ||| |||   |
Sbjct: 1281 caggtaaaactgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcg 1222

                                                                        
Query: 539  ttcctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccaca 598
            | |||| ||||||||||| ||||||||||||||||||||||||| ||||||  | |||| 
Sbjct: 1221 tcccttgatctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacc 1162

                                                                        
Query: 599  tcttccatacaaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 658
            |||||||||||||   ||||| || ||||||||||||  ||||||||| |||||||||||
Sbjct: 1161 tcttccatacaaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 1102



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>gb|AY224498.1| Oryza sativa (japonica cultivar-group) isolate 31120 putative
           serine protease-like protein mRNA, partial cds
          Length = 910

 Score =  394 bits (199), Expect = e-106
 Identities = 410/478 (85%), Gaps = 3/478 (0%)
 Strand = Plus / Minus

                                                                       
Query: 184 agttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcacttga 243
           |||| |||||||| |||||  |||||||||| ||| |||| ||||| |||||||||||||
Sbjct: 910 agttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcacttga 851

                                                                       
Query: 244 cgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagcaca 303
            ||| |||  |||||||||||| || || |||||||| |||||||||||||||||||| |
Sbjct: 850 tgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagcaga 791

                                                                       
Query: 304 gtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactgatt 363
           | ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| ||||
Sbjct: 790 gcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccgatt 731

                                                                       
Query: 364 tcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggtgatt 423
           |||| ||||| ||||||||||| || |  |||| ||  |||||||| |||||||| ||||
Sbjct: 730 tcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcaggcgatt 671

                                                                       
Query: 424 ccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttcttcca 483
           |||||||||  ||||||||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 670 ccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttcttcca 611

                                                                       
Query: 484 gataaaactgaatccagttatggaatcctgagacctcggtctctccttgt-ctc--tgtt 540
           | |||||||||||||| ||||||||||||||||||||  ||||||| ||| |||   || 
Sbjct: 610 ggtaaaactgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcgtc 551

                                                                       
Query: 541 cctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacatc 600
           |||| ||||||||||| ||||||||||||||||||||||||| ||||||  | |||| ||
Sbjct: 550 ccttgatctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacctc 491

                                                                     
Query: 601 ttccatacaaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 658
           |||||||||||   ||||| || ||||||||||||  ||||||||| |||||||||||
Sbjct: 490 ttccatacaaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 433



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>gb|AY110353.1| Zea mays CL9084_1 mRNA sequence
          Length = 668

 Score =  387 bits (195), Expect = e-104
 Identities = 371/432 (85%)
 Strand = Plus / Plus

                                                                       
Query: 180 aatcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcac 239
           |||||||||||||||||||||||| |||| ||||| |||||||| ||||  |||||||||
Sbjct: 228 aatcagttctctgcaatgggaaaggctgatccaattttgttgttccccaatcggtagcac 287

                                                                       
Query: 240 ttgacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaag 299
           |||||||||||  ||||||||||||||||||| |||||||| |||||||| |       |
Sbjct: 288 ttgacgttcacactgtacgggccaatatcgacgcggttatcttcccctccaacnnnnnng 347

                                                                       
Query: 300 cacagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatact 359
           ||||  ||||||||||| | ||| |||||||| || || |||||||| | ||| ||||||
Sbjct: 348 cacaacgtgtagagtgcaacctcaaactcaggactgacgccaatcaacgtgctggatact 407

                                                                       
Query: 360 gatttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcaggt 419
           ||||||||||| |||||||||||||| || || ||||| |  ||| |||| |||||||| 
Sbjct: 408 gatttcagcacgccatgccactcaaactgaacagtcagcagctgtatctctgaatcaggc 467

                                                                       
Query: 420 gattccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttct 479
           ||||| ||||| || ||||| ||||| ||||||||||| || ||||||||||||||||||
Sbjct: 468 gattcaccacggcgccttggaaatatataaccttggtaatccacatttcccttggcttct 527

                                                                       
Query: 480 tccagataaaactgaatccagttatggaatcctgagacctcggtctctccttgtctctgt 539
           ||||| ||||||||||||||||||||||| ||||| |||||  |||| ||||| | | ||
Sbjct: 528 tccaggtaaaactgaatccagttatggaagcctgatacctcactctccccttgnccccgt 587

                                                                       
Query: 540 tcctttatctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacat 599
            | || |||||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct: 588 cctttgatctcaccaacaaacacatgctcaaaggcagaagagcagctagagttgccacct 647

                       
Query: 600 cttccatacaaa 611
           ||||||||||||
Sbjct: 648 cttccatacaaa 659



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>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08,
              complete sequence
          Length = 140449

 Score =  184 bits (93), Expect = 2e-43
 Identities = 201/237 (84%)
 Strand = Plus / Minus

                                                                          
Query: 182    tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 241
              |||||| |||||||| |||||  |||||||||| ||| |||| ||||| |||||||||||
Sbjct: 110640 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 110581

                                                                          
Query: 242    gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 301
              || ||| |||  |||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct: 110580 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 110521

                                                                          
Query: 302    cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 361
               || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| ||
Sbjct: 110520 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 110461

                                                                       
Query: 362    tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcagg 418
              |||||| ||||| ||||||||||| || |  |||| ||  |||||||| ||||||||
Sbjct: 110460 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcagg 110404



 Score =  135 bits (68), Expect = 2e-28
 Identities = 147/171 (85%), Gaps = 3/171 (1%)
 Strand = Plus / Minus

                                                                          
Query: 491    ctgaatccagttatggaatcctgagacctcggtctctccttgtc-tct--gttcctttat 547
              ||||||||| ||||||||||||||||||||  ||||||| |||| ||   || |||| ||
Sbjct: 110164 ctgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcgtcccttgat 110105

                                                                          
Query: 548    ctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacatcttccata 607
              ||||||||| ||||||||||||||||||||||||| ||||||  | |||| |||||||||
Sbjct: 110104 ctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacctcttccata 110045

                                                                 
Query: 608    caaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 658
              ||||   ||||| || ||||||||||||  ||||||||| |||||||||||
Sbjct: 110044 caaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 109994



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                          
Query: 420    gattccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttct 479
              |||||||||||||  ||||||||||||||||||||||| || ||||| || |||||||||
Sbjct: 110317 gattccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttct 110258

                            
Query: 480    tccagataaaactg 493
              ||||| ||||||||
Sbjct: 110257 tccaggtaaaactg 110244



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  184 bits (93), Expect = 2e-43
 Identities = 201/237 (84%)
 Strand = Plus / Minus

                                                                            
Query: 182      tcagttctctgcaatgggaaagactgacccaatcttgttgttacccatacggtagcactt 241
                |||||| |||||||| |||||  |||||||||| ||| |||| ||||| |||||||||||
Sbjct: 27167997 tcagttatctgcaattggaaatgctgacccaattttgctgtttcccattcggtagcactt 27167938

                                                                            
Query: 242      gacgttcactgtgtacgggccaatatcgacacggttatcctcccctcccataaagaagca 301
                || ||| |||  |||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct: 27167937 gatgtttactccgtacgggccaatctcaacgcggttatcttcccctcccataaagaagca 27167878

                                                                            
Query: 302      cagtgtgtagagtgccagctcgaactcagggctaacaccaatcaaagagcttgatactga 361
                 || ||||||||||| | ||| ||||||||||| |||||||||| || ||| ||||| ||
Sbjct: 27167877 gagcgtgtagagtgcaacctcaaactcagggctgacaccaatcagagtgctggataccga 27167818

                                                                         
Query: 362      tttcagcacaccatgccactcaaattgcacggtcagtaattgtgtctccgaatcagg 418
                |||||| ||||| ||||||||||| || |  |||| ||  |||||||| ||||||||
Sbjct: 27167817 tttcagaacaccgtgccactcaaactgaatagtcaatagctgtgtctctgaatcagg 27167761



 Score =  135 bits (68), Expect = 2e-28
 Identities = 147/171 (85%), Gaps = 3/171 (1%)
 Strand = Plus / Minus

                                                                            
Query: 491      ctgaatccagttatggaatcctgagacctcggtctctccttgtc-tct--gttcctttat 547
                ||||||||| ||||||||||||||||||||  ||||||| |||| ||   || |||| ||
Sbjct: 27167521 ctgaatccaattatggaatcctgagacctcattctctccctgtcctcgtcgtcccttgat 27167462

                                                                            
Query: 548      ctcaccaacaaacacatgctcaaatgcagaagagcagctagagttaccacatcttccata 607
                ||||||||| ||||||||||||||||||||||||| ||||||  | |||| |||||||||
Sbjct: 27167461 ctcaccaacgaacacatgctcaaatgcagaagagctgctagaactgccacctcttccata 27167402

                                                                   
Query: 608      caaagtaaaccaaagggatgtcagcattgccttgaagtcatcatagtcttg 658
                ||||   ||||| || ||||||||||||  ||||||||| |||||||||||
Sbjct: 27167401 caaatcgaaccatagcgatgtcagcattctcttgaagtcctcatagtcttg 27167351



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                            
Query: 420      gattccccacgccgtcttgggaatatgtaaccttggtagtcgacatttcccttggcttct 479
                |||||||||||||  ||||||||||||||||||||||| || ||||| || |||||||||
Sbjct: 27167674 gattccccacgcctccttgggaatatgtaaccttggtaatccacattcccattggcttct 27167615

                              
Query: 480      tccagataaaactg 493
                ||||| ||||||||
Sbjct: 27167614 tccaggtaaaactg 27167601



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>gb|BT000202.1| Arabidopsis thaliana putative serine protease-like protein
            (At4g17100) mRNA, complete cds
          Length = 1361

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 441  aatatgtaaccttggtagtcgacatttcccttggcttcttccagataaaactgaatccag 500
            ||||| || ||||| || || ||| |||| |||||||| ||||  |||||||||| ||||
Sbjct: 1046 aatatatagccttgataatctacagttcctttggcttcctccaagtaaaactgaagccag 987

                             
Query: 501  ttatggaatcctgagac 517
            ||||||||||| |||||
Sbjct: 986  ttatggaatccagagac 970



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 546 atctcaccaacaaacacatgctcaaatgcagaaga 580
           |||||||| ||||| ||||||||||| ||||||||
Sbjct: 947 atctcacctacaaagacatgctcaaacgcagaaga 913



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>gb|AY093205.1| Arabidopsis thaliana putative serine protease-like protein
            (At4g17100) mRNA, complete cds
          Length = 1685

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 441  aatatgtaaccttggtagtcgacatttcccttggcttcttccagataaaactgaatccag 500
            ||||| || ||||| || || ||| |||| |||||||| ||||  |||||||||| ||||
Sbjct: 1191 aatatatagccttgataatctacagttcctttggcttcctccaagtaaaactgaagccag 1132

                             
Query: 501  ttatggaatcctgagac 517
            ||||||||||| |||||
Sbjct: 1131 ttatggaatccagagac 1115



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 546  atctcaccaacaaacacatgctcaaatgcagaaga 580
            |||||||| ||||| ||||||||||| ||||||||
Sbjct: 1092 atctcacctacaaagacatgctcaaacgcagaaga 1058



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>gb|AY813710.1| Schistosoma japonicum SJCHGC05913 protein mRNA, complete cds
          Length = 1480

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 549  tcaccaacaaacacatgctcaaatgcagaaga 580
            ||||||||||||||||| || |||||||||||
Sbjct: 1052 tcaccaacaaacacatgttcgaatgcagaaga 1021



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>emb|Z97342.2|ATFCA7 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 7
          Length = 201471

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 546    atctcaccaacaaacacatgctcaaatgcagaaga 580
              |||||||| ||||| ||||||||||| ||||||||
Sbjct: 173588 atctcacctacaaagacatgctcaaacgcagaaga 173622



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>emb|AL161545.2|ATCHRIV45 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 45
          Length = 199548

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 546    atctcaccaacaaacacatgctcaaatgcagaaga 580
              |||||||| ||||| ||||||||||| ||||||||
Sbjct: 159417 atctcacctacaaagacatgctcaaacgcagaaga 159451



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>emb|BX813846.1|CNS0ABZO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB42ZD09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1706

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 546 atctcaccaacaaacacatgctcaaatgcagaaga 580
           |||||||| ||||| ||||||||||| ||||||||
Sbjct: 738 atctcacctacaaagacatgctcaaacgcagaaga 772



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>ref|XM_783872.1| PREDICTED: Strongylocentrotus purpuratus similar to Placental
           protein 11 precursor (PP11) (LOC583987), mRNA
          Length = 960

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 547 tctcaccaacaaacacatgctcaaatgcagaaga 580
           ||||||| |||||||||||||||||  |||||||
Sbjct: 538 tctcacctacaaacacatgctcaaacccagaaga 505



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>emb|AL646042.14| Mouse DNA sequence from clone RP23-70A15 on chromosome 11 Contains
           the 5' end of the Ulk2 gene for Unc-51 like kinase 2 (C.
           elegans), two novel genes (A530017D24Rik, D630015H07),
           the Akap10 gene for  A kinase (PRKA) anchor protein 10,
           the 5' end of the gene for a novel protein similar to
           human sperm antigen HCMOGT-1 (B230396K10Rik) and three
           CpG islands, complete sequence
          Length = 159693

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 3   tttggtgctgtatacttgtaat 24
           ||||||||||||||||||||||
Sbjct: 647 tttggtgctgtatacttgtaat 668



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>emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on chromosome 11 Contains
            the 3' end of the Ulk2 gene for Unc-51 like kinase 2 (C.
            elegans), the Prpsap2 gene for phosphoribosyl
            pyrophosphate synthetase-associated protein 2, the gene
            for a novel sodium/glucose cotransporter protein, the
            gene for a novel protein (2310040C09Rik), the Grap gene
            for GRB2-related adaptor protein and a CpG island,
            complete sequence
          Length = 186359

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 3    tttggtgctgtatacttgtaat 24
            ||||||||||||||||||||||
Sbjct: 1354 tttggtgctgtatacttgtaat 1333



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>emb|AL645634.6| Human DNA sequence from clone RP11-402L1 on chromosome 10 Contains an
             adenylyl cyclase-associated protein 1 (CAP 1) pseudogene,
             a novel zinc finger protein gene (LOC220992), three novel
             genes, the ZNF32 gene for zinc finger protein 32 (KOX30),
             the ZNF32OS1 gene for zinc finger protein 32 opposite
             strand 1, the ZNF32OS2 gene for zinc finger protein 32
             opposite strand 2, a ribosomal protein L21 (RPL21)
             pseudogene and three CpG islands, complete sequence
          Length = 80106

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 462   acatttcccttggcttcttcc 482
             |||||||||||||||||||||
Sbjct: 71300 acatttcccttggcttcttcc 71320



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>gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosome 12, complete sequence
          Length = 151373

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 527    tccttgtctctgttcctttatctc 550
              |||||||||||||| |||||||||
Sbjct: 102066 tccttgtctctgtttctttatctc 102043



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>ref|XM_814587.1| Trypanosoma cruzi strain CL Brener hypothetical protein
             (Tc00.1047053507023.220) partial mRNA
          Length = 13521

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 539   ttcctttatctcaccaacaa 558
             ||||||||||||||||||||
Sbjct: 13122 ttcctttatctcaccaacaa 13103



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>gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complete sequence
          Length = 205784

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 527    tccttgtctctgttcctttatctc 550
              |||||||||||||| |||||||||
Sbjct: 195917 tccttgtctctgtttctttatctc 195940



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>ref|XM_805490.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053509171.100) partial mRNA
          Length = 1911

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 539  ttcctttatctcaccaacaa 558
            ||||||||||||||||||||
Sbjct: 1512 ttcctttatctcaccaacaa 1493



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>ref|XM_662168.1| Cryptosporidium hominis TU502 DNA-directed RNA polymerase II/III
           subunit (Chro.60382) partial mRNA
          Length = 5610

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 184 agttctctgcaatgggaaag 203
           ||||||||||||||||||||
Sbjct: 122 agttctctgcaatgggaaag 141



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>emb|AL845454.6| Human DNA sequence from clone DAQB-90C11 on chromosome 6 Contains HLA-H
             for major histocompatibility complex, class I, H
             (pseudogene), HLA-16 pseudogene, HCP5P6 for HLA complex P5
             pseudogene 6, HCG4P6 for HLA complex group 4 pseudogene 6,
             HLA-K for major histocompatibility complex, class I, K,
             HLA-21 pseudogene, HLA-A for major histocompatibility
             complex, class I, A, HCP5P3 for HLA complex P5 pseudogene
             3, HLA-80 pseudogene,  MICD for MHC class I
             polypeptide-related sequence D, HCG9 for HLA complex group
             9,  HCP5P2 for HLA complex P5 pseudogene 2, HLA-J for
             major histocompatibility complex, class I, J (pseudogene),
             HCG8 for HLA complex group 8, 5' end of C6orf12 for
             chromosome 6 open reading frame 12 and five CpG islands,
             complete sequence
          Length = 159427

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 530   ttgtctctgttcctttatctcacc 553
             ||||||||||||||||| ||||||
Sbjct: 87524 ttgtctctgttcctttacctcacc 87501



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>emb|BX538352.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 3/4
          Length = 293050

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   agttctctgcaatgggaaag 203
             ||||||||||||||||||||
Sbjct: 33590 agttctctgcaatgggaaag 33571



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>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the
             5' end of the gene for a novel protein (330000P08Rik)
             (Luc7a), the gene for a novel protein (5530600A18Rik), the
             Abcc3 gene for ATP-binding cassette sub-family C
             (CFTR/MRP) member 3, the Cacna1g gene for calcium channel
             voltage-dependent T type alpha 1G subunit, the 3' end of
             the Tisp78 gene for transcript increased in spermiogenesis
             78 and one CpG island, complete sequence
          Length = 161978

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 590   gttaccacatcttccataca 609
             ||||||||||||||||||||
Sbjct: 85786 gttaccacatcttccataca 85805



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>emb|CR759762.5| Human DNA sequence from clone DAMC-190N15 on chromosome 6, complete
             sequence
          Length = 40072

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 530   ttgtctctgttcctttatctcacc 553
             ||||||||||||||||| ||||||
Sbjct: 12922 ttgtctctgttcctttacctcacc 12899



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>emb|CR388220.8| Human DNA sequence from clone DADB-123D8 on chromosome 6, complete
              sequence
          Length = 131368

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 530    ttgtctctgttcctttatctcacc 553
              ||||||||||||||||| ||||||
Sbjct: 113007 ttgtctctgttcctttacctcacc 112984



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>gb|AC113348.2| Homo sapiens chromosome 5 clone CTD-2537M22, complete sequence
          Length = 80723

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 624   gatgtcagcattgccttgaa 643
             ||||||||||||||||||||
Sbjct: 16201 gatgtcagcattgccttgaa 16220



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>ref|XM_627674.1| Cryptosporidium parvum Iowa II DNA-directed RNA polymerase III C1
           subunit (cgd6_3290), partial mRNA
          Length = 5616

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 184 agttctctgcaatgggaaag 203
           ||||||||||||||||||||
Sbjct: 122 agttctctgcaatgggaaag 141



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>gb|AF529557.1| Acipenser fulvescens clone AfuG218 microsatellite sequence
          Length = 458

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 489 aactgaatccagttatggaa 508
           ||||||||||||||||||||
Sbjct: 372 aactgaatccagttatggaa 353



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>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 530     ttgtctctgttcctttatctcacc 553
               ||||||||||||||||| ||||||
Sbjct: 1531971 ttgtctctgttcctttacctcacc 1531994



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>emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chromosome 2, complete
              sequence
          Length = 188464

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 609    aaagtaaaccaaagggatgt 628
              ||||||||||||||||||||
Sbjct: 161809 aaagtaaaccaaagggatgt 161828



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>gb|AF055066.1|AF055066 Homo sapiens MHC class 1 region
          Length = 319486

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 530   ttgtctctgttcctttatctcacc 553
             ||||||||||||||||| ||||||
Sbjct: 86715 ttgtctctgttcctttacctcacc 86738



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>ref|XM_311128.2| Anopheles gambiae str. PEST ENSANGP00000017337
           (ENSANGG00000014848), partial mRNA
          Length = 658

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 307 tgtagagtgccagctcgaactcag 330
           |||||||||||||||||| |||||
Sbjct: 79  tgtagagtgccagctcgagctcag 56



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>gb|AC161018.4| Pan troglodytes BAC clone CH251-345F11 from chromosome unknown,
             complete sequence
          Length = 153379

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    accaacagtgtaaatctcac 103
             ||||||||||||||||||||
Sbjct: 22400 accaacagtgtaaatctcac 22381



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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 548     ctcaccaacaaacacatgctcaaa 571
               ||||| ||||||||||||||||||
Sbjct: 1523477 ctcacaaacaaacacatgctcaaa 1523454



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>emb|AJ342601.1|HSA342601 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-NA10C
          Length = 605

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 aagggaaaagataaaaaccg 129
           ||||||||||||||||||||
Sbjct: 602 aagggaaaagataaaaaccg 583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,993,745
Number of Sequences: 3902068
Number of extensions: 5993745
Number of successful extensions: 141779
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141614
Number of HSP's gapped (non-prelim): 162
length of query: 658
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 635
effective length of database: 17,143,297,704
effective search space: 10885994042040
effective search space used: 10885994042040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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