ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13l24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK108468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 3e-92
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 133 8e-28
3dbj|AP005610.3| Oryza sativa (japonica cultivar-group) genomic D... 133 8e-28
4dbj|AP005192.3| Oryza sativa (japonica cultivar-group) genomic D... 133 8e-28
5gb|AY111468.1| Zea mays CL16188_1 mRNA sequence 74 6e-10
6ref|NM_179404.2| Arabidopsis thaliana nucleic acid binding AT1G3... 52 0.002
7gb|AC149300.1| Populus trichocarpa clone Pop1-040E01, complete s... 52 0.002
8gb|AC149296.1| Populus trichocarpa clone Pop1-012O23, complete s... 52 0.002
9gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 se... 52 0.002
10gb|BT002484.1| Arabidopsis thaliana Unknown protein mRNA, comple... 52 0.002
11emb|BX813519.1|CNS0AALV Arabidopsis thaliana Full-length cDNA Co... 46 0.15
12gb|AC140431.4| Mus musculus BAC clone RP24-172K3 from chromosome... 42 2.3
13emb|BX571701.10| Zebrafish DNA sequence from clone CH211-233M11 ... 42 2.3
14emb|BX005484.7| Zebrafish DNA sequence from clone DKEY-25G12, co... 42 2.3
15emb|AL513346.17| Mouse DNA sequence from clone RP23-170L10 on ch... 42 2.3
16gb|AC119205.8| Mus musculus chromosome 5, clone RP24-188M1, comp... 40 9.0
17gb|AC115830.6| Mus musculus chromosome 7, clone RP24-96A19, comp... 40 9.0
18gb|AY666071.1| Nephila pilipes clone NP-RTPD08 dragline silk spi... 40 9.0
19gb|AY666070.1| Nephila pilipes clone NP-RTPD03 dragline silk spi... 40 9.0
20gb|AY666069.1| Nephila pilipes clone NP-RTPD01 dragline silk spi... 40 9.0
21gb|AC162614.2| Mus musculus chromosome 7, clone RP23-421O10, com... 40 9.0
22gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 9.0
23gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
24gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
25gb|AC093474.7| Mus musculus chromosome 7, clone RP23-54H2, compl... 40 9.0
26gb|AC024609.2| Arabidopsis thaliana chromosome I BAC F14P1 genom... 40 9.0
27emb|Z98753.1|HS238J17 Human DNA sequence from clone RP1-238J17 o... 40 9.0
28ref|XM_781301.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.0
29emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 9.0
30emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 9.0
31emb|CR861341.1| Pongo pygmaeus mRNA; cDNA DKFZp459M0411 (from cl... 40 9.0
32gb|AC160985.4| Mus musculus BAC clone RP23-333D9 from chromosome... 40 9.0
33gb|AC021486.10| Homo sapiens chromosome , clone RP11-73I6, compl... 40 9.0
34gb|AC079273.5| Mus musculus strain C57BL/6J chromosome 12 clone ... 40 9.0
35gb|AC007797.7|AC007797 Arabidopsis thaliana chromosome I BAC F6F... 40 9.0
36emb|BX572629.8| Zebrafish DNA sequence from clone CH211-195L15 i... 40 9.0
37tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy ... 40 9.0
38emb|CR381592.4| Zebrafish DNA sequence from clone CH211-94B7 in ... 40 9.0
39gb|AC124587.5| Mus musculus BAC clone RP23-132G24 from 1, comple... 40 9.0
40emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus co... 40 9.0 
>dbj|AK108468.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-E03, full
           insert sequence
          Length = 1068

 Score =  347 bits (175), Expect = 3e-92
 Identities = 325/375 (86%)
 Strand = Plus / Minus

                                                                       
Query: 282 tcaccagtaacccggtcatatgtcaagaaagcatcccctatttgcccaatcactttattc 341
           |||||| ||||||| ||||||| |||||||||||| |||||||| ||||||||||| || 
Sbjct: 594 tcaccactaacccgttcatatgacaagaaagcatctcctatttgtccaatcactttgttg 535

                                                                       
Query: 342 cgcaccttcttcatacagacctgcacgacatcaacagggccagcatctggatccctgttt 401
           ||||||||| ||| ||| |||||||| |||||||  ||||||   | |||||||||||||
Sbjct: 534 cgcaccttcctcacacaaacctgcacaacatcaagtgggccactgtttggatccctgttt 475

                                                                       
Query: 402 cggtgtatgacgataccattatcacatttgtttatgaaatgtgcacttccactgatgtcg 461
           || || ||||| || ||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 474 cgatggatgacaattccattatcacatttgtttatgaaatgtgcgcttccactgatgtca 415

                                                                       
Query: 462 tacatattaggcggtgcgccattccagttgtgaagctgcctagggtgcgcaacaaaccat 521
           ||||||||||| ||  | ||||||||||| |||||||| |||||||| ||||||||||| 
Sbjct: 414 tacatattaggaggaccaccattccagttatgaagctgtctagggtgggcaacaaaccaa 355

                                                                       
Query: 522 acgtgacatgaatgatgttgagcaaaacgcttaatcttcgtaaggatctggctgacatat 581
           || ||||| ||||| || |||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct: 354 acatgacaagaatggtgctgagcaaaccgcttaatcttggtaagcatctgactgacatat 295

                                                                       
Query: 582 tctgtctcagtttgatttggagggcgctgatggtcaagctcattataaggatcaatcaca 641
           ||||| || ||||||||||  ||||| || || ||||| ||||| || ||||||||||||
Sbjct: 294 tctgtttcggtttgatttgaggggcgttggtgatcaagttcattgtagggatcaatcaca 235

                          
Query: 642 agaccacgtactcca 656
           |||||||| ||||||
Sbjct: 234 agaccacgcactcca 220
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  133 bits (67), Expect = 8e-28
 Identities = 121/139 (87%)
 Strand = Plus / Minus

                                                                            
Query: 360      acctgcacgacatcaacagggccagcatctggatccctgtttcggtgtatgacgatacca 419
                |||||||| |||||||  ||||||   | ||||||||||||||| || ||||| || |||
Sbjct: 27489873 acctgcacaacatcaagtgggccactgtttggatccctgtttcgatggatgacaattcca 27489814

                                                                            
Query: 420      ttatcacatttgtttatgaaatgtgcacttccactgatgtcgtacatattaggcggtgcg 479
                |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||  | 
Sbjct: 27489813 ttatcacatttgtttatgaaatgtgcgcttccactgatgtcatacatattaggaggacca 27489754

                                   
Query: 480      ccattccagttgtgaagct 498
                ||||||||||| |||||||
Sbjct: 27489753 ccattccagttatgaagct 27489735



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                            
Query: 501      ctagggtgcgcaacaaaccatacgtgacatgaatgatgttgagcaaaacgcttaatcttc 560
                |||||||| ||||||||||| || ||||| ||||| || |||||||| ||||||||||| 
Sbjct: 27489645 ctagggtgggcaacaaaccaaacatgacaagaatggtgctgagcaaaccgcttaatcttg 27489586

                                          
Query: 561      gtaaggatctggctgacatattctgt 586
                ||||| ||||| ||||||||||||||
Sbjct: 27489585 gtaagcatctgactgacatattctgt 27489560



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                            
Query: 297      tcatatgtcaagaaagcatcccctatttgcccaatcactttattccgcaccttcttcata 356
                ||||||| |||||||||||| |||||||| ||||||||||| || ||||||||| ||| |
Sbjct: 27490052 tcatatgacaagaaagcatctcctatttgtccaatcactttgttgcgcaccttcctcaca 27489993

                        
Query: 357      cagacctg 364
                || |||||
Sbjct: 27489992 caaacctg 27489985



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                            
Query: 594      tgatttggagggcgctgatggtcaagctcattataaggatcaatcacaagaccacgtact 653
                |||||||  ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 27489030 tgatttgaggggcgttggtgatcaagttcattgtagggatcaatcacaagaccacgcact 27488971

                   
Query: 654      cca 656
                |||
Sbjct: 27488970 cca 27488968
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>dbj|AP005610.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0032M14
          Length = 146636

 Score =  133 bits (67), Expect = 8e-28
 Identities = 121/139 (87%)
 Strand = Plus / Minus

                                                                         
Query: 360   acctgcacgacatcaacagggccagcatctggatccctgtttcggtgtatgacgatacca 419
             |||||||| |||||||  ||||||   | ||||||||||||||| || ||||| || |||
Sbjct: 59431 acctgcacaacatcaagtgggccactgtttggatccctgtttcgatggatgacaattcca 59372

                                                                         
Query: 420   ttatcacatttgtttatgaaatgtgcacttccactgatgtcgtacatattaggcggtgcg 479
             |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||  | 
Sbjct: 59371 ttatcacatttgtttatgaaatgtgcgcttccactgatgtcatacatattaggaggacca 59312

                                
Query: 480   ccattccagttgtgaagct 498
             ||||||||||| |||||||
Sbjct: 59311 ccattccagttatgaagct 59293



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                         
Query: 501   ctagggtgcgcaacaaaccatacgtgacatgaatgatgttgagcaaaacgcttaatcttc 560
             |||||||| ||||||||||| || ||||| ||||| || |||||||| ||||||||||| 
Sbjct: 59203 ctagggtgggcaacaaaccaaacatgacaagaatggtgctgagcaaaccgcttaatcttg 59144

                                       
Query: 561   gtaaggatctggctgacatattctgt 586
             ||||| ||||| ||||||||||||||
Sbjct: 59143 gtaagcatctgactgacatattctgt 59118



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                         
Query: 297   tcatatgtcaagaaagcatcccctatttgcccaatcactttattccgcaccttcttcata 356
             ||||||| |||||||||||| |||||||| ||||||||||| || ||||||||| ||| |
Sbjct: 59610 tcatatgacaagaaagcatctcctatttgtccaatcactttgttgcgcaccttcctcaca 59551

                     
Query: 357   cagacctg 364
             || |||||
Sbjct: 59550 caaacctg 59543



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                         
Query: 594   tgatttggagggcgctgatggtcaagctcattataaggatcaatcacaagaccacgtact 653
             |||||||  ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 58588 tgatttgaggggcgttggtgatcaagttcattgtagggatcaatcacaagaccacgcact 58529

                
Query: 654   cca 656
             |||
Sbjct: 58528 cca 58526
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>dbj|AP005192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0485A07
          Length = 166397

 Score =  133 bits (67), Expect = 8e-28
 Identities = 121/139 (87%)
 Strand = Plus / Minus

                                                                          
Query: 360    acctgcacgacatcaacagggccagcatctggatccctgtttcggtgtatgacgatacca 419
              |||||||| |||||||  ||||||   | ||||||||||||||| || ||||| || |||
Sbjct: 108942 acctgcacaacatcaagtgggccactgtttggatccctgtttcgatggatgacaattcca 108883

                                                                          
Query: 420    ttatcacatttgtttatgaaatgtgcacttccactgatgtcgtacatattaggcggtgcg 479
              |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||  | 
Sbjct: 108882 ttatcacatttgtttatgaaatgtgcgcttccactgatgtcatacatattaggaggacca 108823

                                 
Query: 480    ccattccagttgtgaagct 498
              ||||||||||| |||||||
Sbjct: 108822 ccattccagttatgaagct 108804



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                          
Query: 501    ctagggtgcgcaacaaaccatacgtgacatgaatgatgttgagcaaaacgcttaatcttc 560
              |||||||| ||||||||||| || ||||| ||||| || |||||||| ||||||||||| 
Sbjct: 108714 ctagggtgggcaacaaaccaaacatgacaagaatggtgctgagcaaaccgcttaatcttg 108655

                                        
Query: 561    gtaaggatctggctgacatattctgt 586
              ||||| ||||| ||||||||||||||
Sbjct: 108654 gtaagcatctgactgacatattctgt 108629



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                          
Query: 297    tcatatgtcaagaaagcatcccctatttgcccaatcactttattccgcaccttcttcata 356
              ||||||| |||||||||||| |||||||| ||||||||||| || ||||||||| ||| |
Sbjct: 109121 tcatatgacaagaaagcatctcctatttgtccaatcactttgttgcgcaccttcctcaca 109062

                      
Query: 357    cagacctg 364
              || |||||
Sbjct: 109061 caaacctg 109054



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                          
Query: 594    tgatttggagggcgctgatggtcaagctcattataaggatcaatcacaagaccacgtact 653
              |||||||  ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 108099 tgatttgaggggcgttggtgatcaagttcattgtagggatcaatcacaagaccacgcact 108040

                 
Query: 654    cca 656
              |||
Sbjct: 108039 cca 108037
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>gb|AY111468.1| Zea mays CL16188_1 mRNA sequence
          Length = 559

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                        
Query: 273 tccttgtattcaccagtaacccggtcatatgtcaagaaagcatcc 317
           |||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 512 tccttgaattcaccagtaacccggtcatatgtcaggaaagcatcc 556
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>ref|NM_179404.2| Arabidopsis thaliana nucleic acid binding AT1G30680 mRNA, complete
            cds
          Length = 2563

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 414  ataccattatcacatttgtttatgaaatgtgcacttccactgatgtcgta 463
            |||||||| |||||||||||||| |||||||| || ||||| || |||||
Sbjct: 2005 ataccattgtcacatttgtttataaaatgtgcgctgccactaatatcgta 1956



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                        
Query: 561  gtaaggatctggctgacatattctgtctcagtttgatttggagggcgctgatggtcaagc 620
            ||||| |||||||||||||| |||||||| || ||   |||||  || ||||| || |||
Sbjct: 1858 gtaagcatctggctgacatactctgtctccgtctggcgtggagtacgttgatgatcgagc 1799

                                   
Query: 621  tcattataaggatcaatcacaag 643
            ||||| |||||||| || |||||
Sbjct: 1798 tcattgtaaggatctataacaag 1776
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>gb|AC149300.1| Populus trichocarpa clone Pop1-040E01, complete sequence
          Length = 124725

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 600   ggagggcgctgatggtcaagctcattataaggatcaat 637
             |||||||| |||||||| |||||||| |||||||||||
Sbjct: 63255 ggagggcgttgatggtcgagctcattgtaaggatcaat 63292
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>gb|AC149296.1| Populus trichocarpa clone Pop1-012O23, complete sequence
          Length = 123280

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 600   ggagggcgctgatggtcaagctcattataaggatcaat 637
             |||||||| |||||||| |||||||| |||||||||||
Sbjct: 12420 ggagggcgttgatggtcgagctcattgtaaggatcaat 12383
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>gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 sequence, complete sequence
          Length = 96183

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 414   ataccattatcacatttgtttatgaaatgtgcacttccactgatgtcgta 463
             |||||||| |||||||||||||| |||||||| || ||||| || |||||
Sbjct: 60780 ataccattgtcacatttgtttataaaatgtgcgctgccactaatatcgta 60731



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 561   gtaaggatctggctgacatattctgtctc 589
             ||||| |||||||||||||| ||||||||
Sbjct: 60633 gtaagcatctggctgacatactctgtctc 60605
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>gb|BT002484.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 2411

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 414  ataccattatcacatttgtttatgaaatgtgcacttccactgatgtcgta 463
            |||||||| |||||||||||||| |||||||| || ||||| || |||||
Sbjct: 2005 ataccattgtcacatttgtttataaaatgtgcgctgccactaatatcgta 1956



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                        
Query: 561  gtaaggatctggctgacatattctgtctcagtttgatttggagggcgctgatggtcaagc 620
            ||||| |||||||||||||| |||||||| || ||   |||||  || ||||| || |||
Sbjct: 1858 gtaagcatctggctgacatactctgtctccgtctggcgtggagtacgttgatgatcgagc 1799

                                   
Query: 621  tcattataaggatcaatcacaag 643
            ||||| |||||||| || |||||
Sbjct: 1798 tcattgtaaggatctataacaag 1776
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>emb|BX813519.1|CNS0AALV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB21ZF08 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2548

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                        
Query: 561  gtaaggatctggctgacatattctgtctcagtttgatttggagggcgctgatggtcaagc 620
            ||||| |||||||||||||| |||||||| || ||   |||||  || ||||| || |||
Sbjct: 1844 gtaagcatctggctgacatactctgtctccgtctggcgtggagtacgttgatgatcgagc 1785

                                   
Query: 621  tcattataaggatcaatcacaag 643
            ||||| |||||||| || |||||
Sbjct: 1784 tcattgtaaggatctataacaag 1762
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>gb|AC140431.4| Mus musculus BAC clone RP24-172K3 from chromosome 7, complete sequence
          Length = 172958

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 579    tattctgtctcagtttgattt 599
              |||||||||||||||||||||
Sbjct: 145750 tattctgtctcagtttgattt 145730
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>emb|BX571701.10| Zebrafish DNA sequence from clone CH211-233M11 in linkage group 13,
             complete sequence
          Length = 154641

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 79    caaaattcatgaatgatggaa 99
             |||||||||||||||||||||
Sbjct: 37766 caaaattcatgaatgatggaa 37746
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>emb|BX005484.7| Zebrafish DNA sequence from clone DKEY-25G12, complete sequence
          Length = 212049

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 188    taaagggaatcagcgtttgta 208
              |||||||||||||||||||||
Sbjct: 108719 taaagggaatcagcgtttgta 108699
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>emb|AL513346.17| Mouse DNA sequence from clone RP23-170L10 on chromosome 15, complete
              sequence
          Length = 196912

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 579    tattctgtctcagtttgattt 599
              |||||||||||||||||||||
Sbjct: 131889 tattctgtctcagtttgattt 131909
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>gb|AC119205.8| Mus musculus chromosome 5, clone RP24-188M1, complete sequence
          Length = 170550

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 179   cagcacaagtaaagggaatcagcg 202
             ||||||||||||||| ||||||||
Sbjct: 95271 cagcacaagtaaaggaaatcagcg 95294
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>gb|AC115830.6| Mus musculus chromosome 7, clone RP24-96A19, complete sequence
          Length = 153718

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 578   atattctgtctcagtttgat 597
             ||||||||||||||||||||
Sbjct: 89000 atattctgtctcagtttgat 88981
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>gb|AY666071.1| Nephila pilipes clone NP-RTPD08 dragline silk spidroin 1 mRNA,
           partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 230 ctgctgctgcttcaccacct 249
           ||||||||||||||||||||
Sbjct: 577 ctgctgctgcttcaccacct 558
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>gb|AY666070.1| Nephila pilipes clone NP-RTPD03 dragline silk spidroin 1 mRNA,
           partial cds
          Length = 731

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 230 ctgctgctgcttcaccacct 249
           ||||||||||||||||||||
Sbjct: 505 ctgctgctgcttcaccacct 486
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>gb|AY666069.1| Nephila pilipes clone NP-RTPD01 dragline silk spidroin 1 mRNA,
           partial cds
          Length = 728

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 230 ctgctgctgcttcaccacct 249
           ||||||||||||||||||||
Sbjct: 505 ctgctgctgcttcaccacct 486
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>gb|AC162614.2| Mus musculus chromosome 7, clone RP23-421O10, complete sequence
          Length = 219414

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    agcacctgctgctgcttcac 244
              ||||||||||||||||||||
Sbjct: 137097 agcacctgctgctgcttcac 137078
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
              genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 216    gatttctgaagcacctgctgctgc 239
              ||||| ||||||||||||||||||
Sbjct: 532683 gatttatgaagcacctgctgctgc 532706
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>gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0087D01, complete sequence
          Length = 83225

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 580   attctgtctcagtttgattt 599
             ||||||||||||||||||||
Sbjct: 17898 attctgtctcagtttgattt 17917
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>gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0073M15, complete sequence
          Length = 143071

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 580   attctgtctcagtttgattt 599
             ||||||||||||||||||||
Sbjct: 96797 attctgtctcagtttgattt 96816
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>gb|AC093474.7| Mus musculus chromosome 7, clone RP23-54H2, complete sequence
          Length = 202444

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 578    atattctgtctcagtttgat 597
              ||||||||||||||||||||
Sbjct: 183839 atattctgtctcagtttgat 183858
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>gb|AC024609.2| Arabidopsis thaliana chromosome I BAC F14P1 genomic sequence, complete
             sequence
          Length = 90341

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   cacatttgtttatgaaatgt 443
             ||||||||||||||||||||
Sbjct: 25297 cacatttgtttatgaaatgt 25316
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>emb|Z98753.1|HS238J17 Human DNA sequence from clone RP1-238J17 on chromosome 6q22, complete
             sequence
          Length = 111507

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    gtcatcttagccatcttccc 63
             ||||||||||||||||||||
Sbjct: 13147 gtcatcttagccatcttccc 13128
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>ref|XM_781301.1| PREDICTED: Strongylocentrotus purpuratus similar to 1-beta dynein
           (LOC581291), partial mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 94  atggaagttagccagtttgt 113
           ||||||||||||||||||||
Sbjct: 906 atggaagttagccagtttgt 887
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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 216    gatttctgaagcacctgctgctgc 239
              ||||| ||||||||||||||||||
Sbjct: 578652 gatttatgaagcacctgctgctgc 578675
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 216    gatttctgaagcacctgctgctgc 239
              ||||| ||||||||||||||||||
Sbjct: 602570 gatttatgaagcacctgctgctgc 602593
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>emb|CR861341.1| Pongo pygmaeus mRNA; cDNA DKFZp459M0411 (from clone DKFZp459M0411)
          Length = 2081

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  atctccttatctgcttcctt 277
            ||||||||||||||||||||
Sbjct: 1380 atctccttatctgcttcctt 1361
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>gb|AC160985.4| Mus musculus BAC clone RP23-333D9 from chromosome 12, complete sequence
          Length = 201990

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     catcttccccaccaggaatc 74
              ||||||||||||||||||||
Sbjct: 166818 catcttccccaccaggaatc 166799
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>gb|AC021486.10| Homo sapiens chromosome , clone RP11-73I6, complete sequence
          Length = 144356

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    agcccaaaattcatgaatga 94
             ||||||||||||||||||||
Sbjct: 19199 agcccaaaattcatgaatga 19180
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>gb|AC079273.5| Mus musculus strain C57BL/6J chromosome 12 clone RP23-373N04, complete
             sequence
          Length = 175987

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    catcttccccaccaggaatc 74
             ||||||||||||||||||||
Sbjct: 16200 catcttccccaccaggaatc 16181
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>gb|AC007797.7|AC007797 Arabidopsis thaliana chromosome I BAC F6F9 genomic sequence, complete
             sequence
          Length = 119942

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   cacatttgtttatgaaatgt 443
             ||||||||||||||||||||
Sbjct: 85563 cacatttgtttatgaaatgt 85582
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>emb|BX572629.8| Zebrafish DNA sequence from clone CH211-195L15 in linkage group 19,
            complete sequence
          Length = 170971

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 347  cttcttcatacagacctgca 366
            ||||||||||||||||||||
Sbjct: 2190 cttcttcatacagacctgca 2171
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>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
               locus, strain C57BL/6
          Length = 2500000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      catcttccccaccaggaatc 74
               ||||||||||||||||||||
Sbjct: 2241620 catcttccccaccaggaatc 2241639
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>emb|CR381592.4| Zebrafish DNA sequence from clone CH211-94B7 in linkage group 7,
             complete sequence
          Length = 116100

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 519   catacgtgacatgaatgatg 538
             ||||||||||||||||||||
Sbjct: 29363 catacgtgacatgaatgatg 29382
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>gb|AC124587.5| Mus musculus BAC clone RP23-132G24 from 1, complete sequence
          Length = 220046

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    ggaagttagccagtttgtgc 115
             ||||||||||||||||||||
Sbjct: 96317 ggaagttagccagtttgtgc 96336
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>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial
              variable region, strain 129/Sv
          Length = 1382053

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     catcttccccaccaggaatc 74
              ||||||||||||||||||||
Sbjct: 453102 catcttccccaccaggaatc 453121


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,484,661
Number of Sequences: 3902068
Number of extensions: 5484661
Number of successful extensions: 98854
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98669
Number of HSP's gapped (non-prelim): 185
length of query: 656
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 633
effective length of database: 17,143,297,704
effective search space: 10851707446632
effective search space used: 10851707446632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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