ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13l23 |
|---|---|
| Clone Library Name | barley_pub |
>PPCS_MOUSE (Q8VDG5) Phosphopantothenate--cysteine ligase (EC 6.3.2.5)| (Phosphopantothenoylcysteine synthetase) (PPC synthetase) Length = 311 Score = 94.7 bits (234), Expect = 1e-19 Identities = 53/118 (44%), Positives = 70/118 (59%), Gaps = 4/118 (3%) Frame = -1 Query: 539 PWXSMAKHKIQSAGGPLNMQLNQVPKMLFILRNHWAPSAFCVSFKLETDPDILIQKAEAA 360 P M +HKI S+GGPL + + VPKML L WAP AF VSFKLETDPDI+I +A A Sbjct: 187 PVSEMPEHKIHSSGGPLQITMKMVPKMLSPLVKDWAPKAFVVSFKLETDPDIIISRARNA 246 Query: 359 LRKYGMNVVVANELANYKDVVVMVTSSGKTTVSRRSKEDD----LEEQLIGLLVKMHS 198 L Y VVVAN L + K V++VT +T + +E +EE+++ L H+ Sbjct: 247 LEVYQHQVVVANILESIKSFVIIVTKDSETELLLSEEEVAKGLVIEEKIVDDLRSRHT 304
>PPCS_HUMAN (Q9HAB8) Phosphopantothenate--cysteine ligase (EC 6.3.2.5)| (Phosphopantothenoylcysteine synthetase) (PPC synthetase) Length = 311 Score = 90.5 bits (223), Expect = 3e-18 Identities = 50/118 (42%), Positives = 70/118 (59%), Gaps = 4/118 (3%) Frame = -1 Query: 539 PWXSMAKHKIQSAGGPLNMQLNQVPKMLFILRNHWAPSAFCVSFKLETDPDILIQKAEAA 360 P M +HKIQS+GGPL + + VPK+L L WAP AF +SFKLETDP I+I +A A Sbjct: 187 PVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKA 246 Query: 359 LRKYGMNVVVANELANYKDVVVMVTSSGKTTVSRRSKE----DDLEEQLIGLLVKMHS 198 L Y VVVAN L + + V +VT +T + +E ++EE+++ L H+ Sbjct: 247 LEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHT 304
>YII3_YEAST (P40506) Hypothetical protein YIL083c| Length = 365 Score = 57.0 bits (136), Expect = 3e-08 Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 21/134 (15%) Frame = -1 Query: 539 PWXSMAKHKIQSAG-------------------GPLNMQLNQVPKMLFILRNHWAPSAFC 417 P+ + +HKIQS G L + L+ VPK L L WA A Sbjct: 218 PYSRLPQHKIQSGDNGKMGANNDTEGTTRTTPDGKLIVNLDPVPKFLRRLVESWATQAMI 277 Query: 416 VSFKLETDPDILIQKAEAALRKYGMNVVVANELANYKDVVVMVTSSGK--TTVSRRSKED 243 VSFKLETD +L+ K AL +Y +V+ N L V+ V+ + V K Sbjct: 278 VSFKLETDESMLLYKCTQALDRYNHQLVIGNLLQTRNKQVIFVSPENRKGDWVRLDEKHH 337 Query: 242 DLEEQLIGLLVKMH 201 +EE +I ++ H Sbjct: 338 IIEEMIIPEVIARH 351
>COABC_METJA (Q58323) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 403 Score = 35.0 bits (79), Expect = 0.13 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%) Frame = -1 Query: 491 LNMQLNQVPKMLFILRNHWAPSAFCVSFKLE--TDPDILIQKAEAALRKYGMNVVVANEL 318 L ++L + PK+L LR + + FK E D LI +A+ L KY +N+++AN+L Sbjct: 301 LILKLKRNPKVLEELRRIYKDKVI-IGFKAEYNLDEKELINRAKERLNKYNLNMIIANDL 359 Query: 317 ANY 309 + + Sbjct: 360 SKH 362
>BRI1_LYCPE (Q8L899) Systemin receptor SR160 precursor (EC 2.7.11.1)| (Brassinosteroid LRR receptor kinase) Length = 1207 Score = 30.4 bits (67), Expect = 3.3 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -3 Query: 504 SRWPFKHAAQSSS*DAFHPQKPLGSFCFLCILQARDGSRHPYTEGRGGFEKVW 346 S W F A ++ S + +KPL F +L+A +G + G GGF V+ Sbjct: 851 SAWKFTSAREALSINLAAFEKPLRKLTFADLLEATNGFHNDSLVGSGGFGDVY 903
>BRI1_LYCES (Q8GUQ5) Brassinosteroid LRR receptor kinase precursor (EC 2.7.11.1)| (tBRI1) (Altered brassinolide sensitivity 1) (Systemin receptor SR160) Length = 1207 Score = 30.4 bits (67), Expect = 3.3 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -3 Query: 504 SRWPFKHAAQSSS*DAFHPQKPLGSFCFLCILQARDGSRHPYTEGRGGFEKVW 346 S W F A ++ S + +KPL F +L+A +G + G GGF V+ Sbjct: 851 SAWKFTSAREALSINLAAFEKPLRKLTFADLLEATNGFHNDSLVGSGGFGDVY 903
>SFH1_SCHPO (Q9USM3) Chromatin structure remodeling complex protein SFH1 (SNF5| homolog 1) Length = 418 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +1 Query: 388 SGSVSSLKDTQKAEGAQWFLRMKSILGT*LSCMFKGPPADWILCLA 525 S SVS + + E +W R ++LGT C+ +GP + LC A Sbjct: 353 SASVSDAQTLLEQERPRWRCRWCNVLGTGTFCVRRGPEGNKSLCNA 398
>FILA_MOUSE (P11088) Filaggrin (Fragment)| Length = 336 Score = 29.6 bits (65), Expect = 5.6 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 17/90 (18%) Frame = -3 Query: 408 QARDGSRHPYTEGRGGFEK-VWYECGGGERASELQGRSCHGHKQREDNR---------EQ 259 Q+ G RH RG +YE E S+ Q + H H+Q+ ++ EQ Sbjct: 131 QSGAGQRHEQRSSRGQHGSGYYYEQEHSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQ 190 Query: 258 AEQGRRPRRA-------AHRSPG*DAFRSR 190 E G R +++ AH+ G D+ R R Sbjct: 191 PESGHRQQQSSGRGHQGAHQEQGRDSARPR 220
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.6 bits (65), Expect = 5.6 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -3 Query: 285 KQREDNREQAEQGRRPRRAAHRSP 214 K+ +DNRE+ ++ R PRR RSP Sbjct: 156 KEDKDNREKRDRSRSPRRRKSRSP 179
>TES_CALMO (Q2QLC3) Testin| Length = 421 Score = 29.3 bits (64), Expect = 7.4 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -3 Query: 429 FCFLCILQARDGSRHPYTEGRGGFEKVWY 343 FC+ C L ++G Y E R G++K+W+ Sbjct: 235 FCYCCKLSMKEGDPAIYAE-RAGYDKLWH 262
>ATG9_NEUCR (Q7S4D7) Autophagy-related protein 9| Length = 908 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = -3 Query: 369 RGGFEKVWYECGGGERASELQGRSCHGHKQREDNREQAEQG 247 RGG + + GGG +++G + HG + +D E + G Sbjct: 811 RGGNQGDGHMMGGGSMEEDVKGAARHGQQTHDDESEDSRAG 851
>CD2L2_HUMAN (Q9UQ88) PITSLRE serine/threonine-protein kinase CDC2L2 (EC| 2.7.11.22) (Galactosyltransferase-associated protein kinase p58/GTA) (Cell division cycle 2-like protein kinase 2) (CDK11) Length = 780 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -3 Query: 327 ERASELQGRSCHGHKQREDNREQAEQGRRPRRAAHR 220 +R +L+ + K RE +EQ EQ R RRA R Sbjct: 154 DRLEQLERKRERERKMREQQKEQREQKERERRAEER 189
>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral| proteinase D) (CANP D) (Small optic lobes protein) Length = 1594 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = -3 Query: 351 VWYECGGGERASELQGRSCHGHKQREDNREQAEQGRRPRRA 229 +W + L G SC G + D E ++G RPR A Sbjct: 1206 IWAQLLSSRCVRFLMGASCGGGNMKVDEEEYQQKGLRPRHA 1246
>CD2L1_HUMAN (P21127) PITSLRE serine/threonine-protein kinase CDC2L1 (EC| 2.7.11.22) (Galactosyltransferase-associated protein kinase p58/GTA) (Cell division cycle 2-like protein kinase 1) (CLK-1) (CDK11) (p58 CLK-1) Length = 795 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -3 Query: 327 ERASELQGRSCHGHKQREDNREQAEQGRRPRRAAHR 220 +R +L+ + K RE +EQ EQ R RRA R Sbjct: 166 DRLEQLERKRERERKMREQQKEQREQKERERRAEER 201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,575,586 Number of Sequences: 219361 Number of extensions: 1311270 Number of successful extensions: 3671 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3534 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3667 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
