ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13l23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480339.1| Oryza sativa (japonica cultivar-group), mRNA 315 8e-83
2dbj|AK067868.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 2e-80
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
4dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
5emb|AL607077.4| Human DNA sequence from clone RP11-374I15 on chr... 46 0.12
6emb|AL390789.13| Human DNA sequence from clone RP11-572N15 on ch... 46 0.12
7gb|AC125037.4| Mus musculus BAC clone RP23-332H20 from chromosom... 44 0.47
8gb|AC127698.5| Mus musculus BAC clone RP24-113N24 from 3, comple... 44 0.47
9ref|XM_754753.1| Ustilago maydis 521 hypothetical protein (UM036... 42 1.8
10gb|AC073114.2| Homo sapiens BAC clone RP11-570H18 from 7, comple... 42 1.8
11gb|AC166262.3| Mus musculus BAC RP23-256D10 (Roswell Park Cance... 42 1.8
12gb|AC159478.7| Mus musculus 10 BAC RP23-460F17 (Roswell Park Can... 42 1.8
13gb|AY814486.1| Schistosoma japonicum SJCHGC01051 protein mRNA, c... 40 7.3
14gb|AY223260.1| Schistosoma japonicum clone ZZD446 mRNA sequence 40 7.3
15gb|AC154577.2| Mus musculus BAC clone RP23-375G9 from chromosome... 40 7.3
16emb|AL355361.39| Human DNA sequence from clone RP11-58N22 on chr... 40 7.3
17gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Canc... 40 7.3
18gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Canc... 40 7.3
19gb|AC161379.2| Mus musculus BAC clone RP23-207P12 from chromosom... 40 7.3
20gb|AC010096.10| Homo sapiens BAC clone RP11-364A16 from 2, compl... 40 7.3
21emb|AL929084.11| Mouse DNA sequence from clone RP23-66M24 on chr... 40 7.3
22gb|AC154265.2| Mus musculus BAC clone RP24-319O20 from 16, compl... 40 7.3
23gb|AY914169.1| Larus argentatus neuronal nicotinic acetylcholine... 40 7.3
24dbj|AP004953.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 7.3 
>ref|XM_480339.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1282

 Score =  315 bits (159), Expect = 8e-83
 Identities = 293/338 (86%)
 Strand = Plus / Minus

                                                                       
Query: 202 tgcatcttaaccaggagaccgatgagctgctcttctaggtcgtcttccttgctccgcctg 261
           |||||||  |||| |||| |||| | ||| ||||| | |||||| ||||||||  |||| 
Sbjct: 957 tgcatctctaccaagagatcgattaactgttcttcgacgtcgtcctccttgctgggcctt 898

                                                                       
Query: 262 ctcacggttgtcttcccgctgcttgtgaccatgacaactacgtccttgtagttcgctagc 321
           | |||||||||| ||||  ||||||||||||| |||||||| || |||||||||||||||
Sbjct: 897 cgcacggttgtcctcccattgcttgtgaccatcacaactacatctttgtagttcgctagc 838

                                                                       
Query: 322 tcgttcgccaccaccacattcataccatactttctcaaagccgcctctgccttctgtata 381
           ||||| || ||||| |||||||||||||||||||||| ||| |||||||||||||| | |
Sbjct: 837 tcgttggcgaccacgacattcataccatactttctcagagctgcctctgccttctgcaga 778

                                                                       
Query: 382 aggatgtctggatccgtctcgagcttgaaggatacacaaaaagcagaaggagcccaatgg 441
           ||||| ||||| |||||||| |||||||||||||||||||| || ||||||||||| || 
Sbjct: 777 aggatatctgggtccgtctcaagcttgaaggatacacaaaatgctgaaggagcccattgt 718

                                                                       
Query: 442 tttctgaggatgaaaagcatcttaggaacttgattgagctgcatgtttaaagggccacct 501
           ||||| || |||||||||||||| |||||||||||||| |||||||| ||||| |||| |
Sbjct: 717 tttctcagaatgaaaagcatcttcggaacttgattgagttgcatgttcaaaggaccactt 658

                                                 
Query: 502 gctgactggattttatgtttagccatactctnccatgg 539
           ||||||| |||||||||||||||||| || | ||||||
Sbjct: 657 gctgactcgattttatgtttagccatgctttcccatgg 620
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>dbj|AK067868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126N15, full
           insert sequence
          Length = 1282

 Score =  307 bits (155), Expect = 2e-80
 Identities = 292/338 (86%)
 Strand = Plus / Minus

                                                                       
Query: 202 tgcatcttaaccaggagaccgatgagctgctcttctaggtcgtcttccttgctccgcctg 261
           |||||||  |||| |||| |||| | ||| ||||| | |||||| ||||||||  |||| 
Sbjct: 957 tgcatctctaccaagagatcgattaactgttcttcgacgtcgtcctccttgctgggcctt 898

                                                                       
Query: 262 ctcacggttgtcttcccgctgcttgtgaccatgacaactacgtccttgtagttcgctagc 321
           | |||||||||| ||||  ||||||||||||| |||||||| || |||||||||||||||
Sbjct: 897 cgcacggttgtcctcccattgcttgtgaccatcacaactacatctttgtagttcgctagc 838

                                                                       
Query: 322 tcgttcgccaccaccacattcataccatactttctcaaagccgcctctgccttctgtata 381
           ||||| || ||||| |||||||||||||||||||||| ||| |||||||||||||| | |
Sbjct: 837 tcgttggcgaccacgacattcataccatactttctcagagctgcctctgccttctgcaga 778

                                                                       
Query: 382 aggatgtctggatccgtctcgagcttgaaggatacacaaaaagcagaaggagcccaatgg 441
           ||||| ||||| |||||||| |||||||||||||||||||| || ||||||||||| || 
Sbjct: 777 aggatatctgggtccgtctcaagcttgaaggatacacaaaatgctgaaggagcccattgt 718

                                                                       
Query: 442 tttctgaggatgaaaagcatcttaggaacttgattgagctgcatgtttaaagggccacct 501
           ||||| || |||||||||||||| |||||||||||||| |||||||| ||| | |||| |
Sbjct: 717 tttctcagaatgaaaagcatcttcggaacttgattgagttgcatgttcaaaagaccactt 658

                                                 
Query: 502 gctgactggattttatgtttagccatactctnccatgg 539
           ||||||| |||||||||||||||||| || | ||||||
Sbjct: 657 gctgactcgattttatgtttagccatgctttcccatgg 620
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  168 bits (85), Expect = 1e-38
 Identities = 175/205 (85%)
 Strand = Plus / Minus

                                                                           
Query: 202     tgcatcttaaccaggagaccgatgagctgctcttctaggtcgtcttccttgctccgcctg 261
               |||||||  |||| |||| |||| | ||| ||||| | |||||| ||||||||  |||| 
Sbjct: 4427534 tgcatctctaccaagagatcgattaactgttcttcgacgtcgtcctccttgctgggcctt 4427475

                                                                           
Query: 262     ctcacggttgtcttcccgctgcttgtgaccatgacaactacgtccttgtagttcgctagc 321
               | |||||||||| ||||  ||||||||||||| |||||||| || |||||||||||||||
Sbjct: 4427474 cgcacggttgtcctcccattgcttgtgaccatcacaactacatctttgtagttcgctagc 4427415

                                                                           
Query: 322     tcgttcgccaccaccacattcataccatactttctcaaagccgcctctgccttctgtata 381
               ||||| || ||||| |||||||||||||||||||||| ||| |||||||||||||| | |
Sbjct: 4427414 tcgttggcgaccacgacattcataccatactttctcagagctgcctctgccttctgcaga 4427355

                                        
Query: 382     aggatgtctggatccgtctcgagct 406
               ||||| ||||| |||||||| ||||
Sbjct: 4427354 aggatatctgggtccgtctcaagct 4427330



 Score =  145 bits (73), Expect = 2e-31
 Identities = 109/121 (90%)
 Strand = Plus / Minus

                                                                           
Query: 405     cttgaaggatacacaaaaagcagaaggagcccaatggtttctgaggatgaaaagcatctt 464
               |||||||||||||||||| || ||||||||||| || ||||| || ||||||||||||||
Sbjct: 4427150 cttgaaggatacacaaaatgctgaaggagcccattgttttctcagaatgaaaagcatctt 4427091

                                                                           
Query: 465     aggaacttgattgagctgcatgtttaaagggccacctgctgactggattttatgtttagc 524
                |||||||||||||| |||||||| ||||| |||| |||||||| |||||||||||||||
Sbjct: 4427090 cggaacttgattgagttgcatgttcaaaggaccacttgctgactcgattttatgtttagc 4427031

                
Query: 525     c 525
               |
Sbjct: 4427030 c 4427030
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>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1134_B10
          Length = 115074

 Score =  168 bits (85), Expect = 1e-38
 Identities = 175/205 (85%)
 Strand = Plus / Minus

                                                                         
Query: 202   tgcatcttaaccaggagaccgatgagctgctcttctaggtcgtcttccttgctccgcctg 261
             |||||||  |||| |||| |||| | ||| ||||| | |||||| ||||||||  |||| 
Sbjct: 74710 tgcatctctaccaagagatcgattaactgttcttcgacgtcgtcctccttgctgggcctt 74651

                                                                         
Query: 262   ctcacggttgtcttcccgctgcttgtgaccatgacaactacgtccttgtagttcgctagc 321
             | |||||||||| ||||  ||||||||||||| |||||||| || |||||||||||||||
Sbjct: 74650 cgcacggttgtcctcccattgcttgtgaccatcacaactacatctttgtagttcgctagc 74591

                                                                         
Query: 322   tcgttcgccaccaccacattcataccatactttctcaaagccgcctctgccttctgtata 381
             ||||| || ||||| |||||||||||||||||||||| ||| |||||||||||||| | |
Sbjct: 74590 tcgttggcgaccacgacattcataccatactttctcagagctgcctctgccttctgcaga 74531

                                      
Query: 382   aggatgtctggatccgtctcgagct 406
             ||||| ||||| |||||||| ||||
Sbjct: 74530 aggatatctgggtccgtctcaagct 74506



 Score =  145 bits (73), Expect = 2e-31
 Identities = 109/121 (90%)
 Strand = Plus / Minus

                                                                         
Query: 405   cttgaaggatacacaaaaagcagaaggagcccaatggtttctgaggatgaaaagcatctt 464
             |||||||||||||||||| || ||||||||||| || ||||| || ||||||||||||||
Sbjct: 74326 cttgaaggatacacaaaatgctgaaggagcccattgttttctcagaatgaaaagcatctt 74267

                                                                         
Query: 465   aggaacttgattgagctgcatgtttaaagggccacctgctgactggattttatgtttagc 524
              |||||||||||||| |||||||| ||||| |||| |||||||| |||||||||||||||
Sbjct: 74266 cggaacttgattgagttgcatgttcaaaggaccacttgctgactcgattttatgtttagc 74207

              
Query: 525   c 525
             |
Sbjct: 74206 c 74206
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>emb|AL607077.4| Human DNA sequence from clone RP11-374I15 on chromosome 6 Contains a
              pseudogene similar to part of acalsia, adrenocortical
              insufficiency, alacrimia (Allgrove, triple-A) (AAAS),
              complete sequence
          Length = 175466

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 439    tggtttctgaggatgaaaagcatctta 465
              ||||||||| |||||||||||||||||
Sbjct: 172614 tggtttctgtggatgaaaagcatctta 172588
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>emb|AL390789.13| Human DNA sequence from clone RP11-572N15 on chromosome 6, complete
             sequence
          Length = 147434

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 439   tggtttctgaggatgaaaagcatctta 465
             ||||||||| |||||||||||||||||
Sbjct: 19245 tggtttctgtggatgaaaagcatctta 19219
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>gb|AC125037.4| Mus musculus BAC clone RP23-332H20 from chromosome 3, complete
            sequence
          Length = 207842

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 434  cccaatggtttctgaggatgaa 455
            ||||||||||||||||||||||
Sbjct: 1912 cccaatggtttctgaggatgaa 1891
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>gb|AC127698.5| Mus musculus BAC clone RP24-113N24 from 3, complete sequence
          Length = 174669

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 434    cccaatggtttctgaggatgaa 455
              ||||||||||||||||||||||
Sbjct: 150014 cccaatggtttctgaggatgaa 149993
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>ref|XM_754753.1| Ustilago maydis 521 hypothetical protein (UM03699.1) partial mRNA
          Length = 1110

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 391 ggatccgtctcgagcttgaag 411
           |||||||||||||||||||||
Sbjct: 767 ggatccgtctcgagcttgaag 747
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>gb|AC073114.2| Homo sapiens BAC clone RP11-570H18 from 7, complete sequence
          Length = 175645

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 448   aggatgaaaagcatcttagga 468
             |||||||||||||||||||||
Sbjct: 60468 aggatgaaaagcatcttagga 60488
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>gb|AC166262.3| Mus musculus  BAC RP23-256D10 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 175073

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 486   gtttaaagggccacctgctgactgg 510
             ||||||||| |||||||||||||||
Sbjct: 45552 gtttaaaggaccacctgctgactgg 45528
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>gb|AC159478.7| Mus musculus 10 BAC RP23-460F17 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 174480

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 486   gtttaaagggccacctgctgactgg 510
             ||||||||| |||||||||||||||
Sbjct: 25951 gtttaaaggaccacctgctgactgg 25975
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>gb|AY814486.1| Schistosoma japonicum SJCHGC01051 protein mRNA, complete cds
          Length = 1214

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 atggtttctgaggatgaaaa 457
           ||||||||||||||||||||
Sbjct: 121 atggtttctgaggatgaaaa 140
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>gb|AY223260.1| Schistosoma japonicum clone ZZD446 mRNA sequence
          Length = 1201

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 atggtttctgaggatgaaaa 457
           ||||||||||||||||||||
Sbjct: 121 atggtttctgaggatgaaaa 140
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>gb|AC154577.2| Mus musculus BAC clone RP23-375G9 from chromosome 17, complete sequence
          Length = 189549

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    gctgcatgtttaaagggcca 498
              ||||||||||||||||||||
Sbjct: 188827 gctgcatgtttaaagggcca 188846
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>emb|AL355361.39| Human DNA sequence from clone RP11-58N22 on chromosome 10 Contains a CpG
              island, complete sequence
          Length = 153070

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    ctcttctaggtcgtcttcct 250
              ||||||||||||||||||||
Sbjct: 116331 ctcttctaggtcgtcttcct 116312
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>gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 206282

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 365    cctctgccttctgtataaggatgt 388
              ||||||||||||| ||||||||||
Sbjct: 185753 cctctgccttctgcataaggatgt 185730
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>gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 219861

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 365    cctctgccttctgtataaggatgt 388
              ||||||||||||| ||||||||||
Sbjct: 194245 cctctgccttctgcataaggatgt 194268
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>gb|AC161379.2| Mus musculus BAC clone RP23-207P12 from chromosome 17, complete sequence
          Length = 189293

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 479    gctgcatgtttaaagggcca 498
              ||||||||||||||||||||
Sbjct: 100278 gctgcatgtttaaagggcca 100259
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>gb|AC010096.10| Homo sapiens BAC clone RP11-364A16 from 2, complete sequence
          Length = 163198

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   ttctgaggatgaaaagcatc 462
             ||||||||||||||||||||
Sbjct: 33101 ttctgaggatgaaaagcatc 33120
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>emb|AL929084.11| Mouse DNA sequence from clone RP23-66M24 on chromosome 2, complete
              sequence
          Length = 183632

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     attctcaaaaggaaatgcta 68
              ||||||||||||||||||||
Sbjct: 164657 attctcaaaaggaaatgcta 164676
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>gb|AC154265.2| Mus musculus BAC clone RP24-319O20 from 16, complete sequence
          Length = 206136

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    tccttgctccgcctgctcac 266
              ||||||||||||||||||||
Sbjct: 143398 tccttgctccgcctgctcac 143379
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>gb|AY914169.1| Larus argentatus neuronal nicotinic acetylcholine receptor alpha-7
           subunit mRNA, partial cds
          Length = 569

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 439 tggtttctgaggatgaaaag 458
           ||||||||||||||||||||
Sbjct: 6   tggtttctgaggatgaaaag 25
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>dbj|AP004953.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT34A24, TM0129,
             complete sequence
          Length = 110487

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 441   gtttctgaggatgaaaagca 460
             ||||||||||||||||||||
Sbjct: 96219 gtttctgaggatgaaaagca 96200


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,365,789
Number of Sequences: 3902068
Number of extensions: 4365789
Number of successful extensions: 76814
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76743
Number of HSP's gapped (non-prelim): 71
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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