ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13l21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1HMGL_WHEAT (P40621) HMG1/2-like protein 67 3e-11
2MNB1B_MAIZE (P27347) DNA-binding protein MNB1B (HMG1-like protein) 62 1e-09
3HMGL_SOYBN (P26585) HMG1/2-like protein (SB11 protein) 46 7e-05
4HMGL_IPONI (P40619) HMG1/2-like protein 45 1e-04
5HMGL_VICFA (P40620) HMG1/2-like protein 44 4e-04
6HMGB3_MOUSE (O54879) High mobility group protein B3 (High mobili... 37 0.045
7HMGB3_HUMAN (O15347) High mobility group protein B3 (High mobili... 36 0.059
8HMGT_ONCMY (P07746) High mobility group-T protein (HMG-T) (HMG-T... 33 0.38
9HMGB1_CHICK (P36194) High mobility group protein B1 (High mobili... 33 0.65
10HMGB3_CHICK (P40618) High mobility group protein B3 (High mobili... 33 0.65
11GCX1_RAT (Q76IQ7) Granulosa cell HMG box protein 1 (GCX-1) 32 1.4
12HMGB2_HUMAN (P26583) High mobility group protein B2 (High mobili... 31 1.9
13CN092_HUMAN (O94842) Epidermal Langerhans cell protein LCP1 31 1.9
14CN092_RAT (Q99PM1) Epidermal Langerhans cell protein LCP1 31 1.9
15CN092_MOUSE (Q8BU11) Epidermal Langerhans cell protein LCP1 31 1.9
16HMGB2_RAT (P52925) High mobility group protein B2 (High mobility... 31 1.9
17HMGB2_PIG (P17741) High mobility group protein B2 (High mobility... 31 1.9
18HMGB2_MOUSE (P30681) High mobility group protein B2 (High mobili... 31 1.9
19HMG1X_HUMAN (Q9UGV6) High mobility group protein 1-like 10 (HMG-... 31 2.5
20HMGB1_CRIGR (P07156) High mobility group protein B1 (High mobili... 31 2.5
21HMGB1_RAT (P63159) High mobility group protein B1 (High mobility... 31 2.5
22HMGB1_MOUSE (P63158) High mobility group protein B1 (High mobili... 31 2.5
23HMGB1_MACFA (Q4R844) High mobility group protein B1 (High mobili... 31 2.5
24HMGB1_HUMAN (P09429) High mobility group protein B1 (High mobili... 31 2.5
25HMGB1_CANFA (Q6YKA4) High mobility group protein B1 (High mobili... 31 2.5
26HMGB1_BOVIN (P10103) High mobility group protein B1 (High mobili... 31 2.5
27SOX8_MOUSE (Q04886) Transcription factor SOX-8 30 3.2
28SOX8_HUMAN (P57073) Transcription factor SOX-8 30 3.2
29CMB1_SCHPO (Q10241) Mismatch-binding protein cmb1 30 3.2
30HMGB1_PIG (P12682) High mobility group protein B1 (High mobility... 30 3.2
31HDC_HUMAN (Q9UBI9) Headcase protein homolog (hHDC) 30 4.2
32NHP6A_YEAST (P11632) Nonhistone chromosomal protein 6A 30 4.2
33CH32_CHICK (P40671) SRY-related protein CH32 (Fragment) 30 4.2
34CH02_CHICK (P40666) SRY-related protein CH2 (Fragment) 30 4.2
35CH01_CHICK (P40665) SRY-related protein CH1 (Fragment) 30 4.2
36SSRP1_CHICK (Q04678) Structure-specific recognition protein 1 (S... 30 5.5
37SOX8_TETNG (Q6IZ48) Transcription factor SOX-8 30 5.5
38HMGH_STRPU (P40644) High mobility group protein 1 homolog 30 5.5
39SOX9_MOUSE (Q04887) Transcription factor SOX-9 29 7.2
40SOX9_CHICK (P48434) Transcription factor SOX-9 29 7.2
41SOX9_CANFA (Q7YRJ7) Transcription factor SOX-9 29 7.2
42LPXK_NITWN (Q3SPI3) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13... 29 7.2
43SOX8_CHICK (P57074) Transcription factor SOX-8 29 7.2
44SOX9_PONPY (P61754) Transcription factor SOX-9 29 7.2
45SOX9_PIG (O18896) Transcription factor SOX-9 29 7.2
46SOX9_PANTR (Q9BG89) Transcription factor SOX-9 29 7.2
47SOX9_MACMU (P61753) Transcription factor SOX-9 29 7.2
48SOX9_HUMAN (P48436) Transcription factor SOX-9 29 7.2
49SOX9_CALJA (Q9BG91) Transcription factor SOX-9 29 7.2
50CH31_CHICK (P40670) SRY-related protein CH31 (Fragment) 29 7.2
51AMA3_ALLMI (P40643) SRY-related protein AMA3 (Fragment) 29 7.2
52AMA2_ALLMI (P40642) SRY-related protein AMA2 (Fragment) 29 7.2
53NHP10_YEAST (Q03435) Non-histone protein 10 (High mobility group... 29 9.3
54SSRP1_RAT (Q04931) Structure-specific recognition protein 1 (SSR... 29 9.3
55HMGB2_CHICK (P26584) High mobility group protein B2 (High mobili... 29 9.3
56SOX14_MOUSE (Q04892) Transcription factor SOX-14 29 9.3
57SOX14_MACFA (P61259) Transcription factor SOX-14 29 9.3
58SOX14_HUMAN (O95416) Transcription factor SOX-14 29 9.3
59SOX14_CHICK (Q9W7R6) Transcription factor SOX-14 (SRY-related pr... 29 9.3
60SSRP1_MOUSE (Q08943) Structure-specific recognition protein 1 (S... 29 9.3
61NHP6B_YEAST (P11633) Nonhistone chromosomal protein 6B 29 9.3
62HMGC_TETTH (P11873) High mobility group protein C (Nonhistone ch... 29 9.3 
>HMGL_WHEAT (P40621) HMG1/2-like protein|
          Length = 161

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAYNKG 433
           WKSLSESEKAP+VAKANK KGEYNKAIAAYNKG
Sbjct: 81  WKSLSESEKAPYVAKANKLKGEYNKAIAAYNKG 113
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>MNB1B_MAIZE (P27347) DNA-binding protein MNB1B (HMG1-like protein)|
          Length = 157

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 29/33 (87%), Positives = 31/33 (93%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAYNKG 433
           WKSLSES+KAP+VAKANK K EYNKAIAAYNKG
Sbjct: 80  WKSLSESDKAPYVAKANKLKLEYNKAIAAYNKG 112
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>HMGL_SOYBN (P26585) HMG1/2-like protein (SB11 protein)|
          Length = 152

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAYNK 436
           WK++S++EKAP+VAK+ K K EY K + AYNK
Sbjct: 83  WKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNK 114
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>HMGL_IPONI (P40619) HMG1/2-like protein|
          Length = 144

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAYNK 436
           WK L+ +EKAPF++KA K K EY K + AYNK
Sbjct: 75  WKQLTAAEKAPFISKAEKRKQEYEKNLQAYNK 106
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>HMGL_VICFA (P40620) HMG1/2-like protein|
          Length = 149

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 20/32 (62%), Positives = 23/32 (71%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAYNK 436
           WKSLSE EKAP+V +A K K EY   + AYNK
Sbjct: 84  WKSLSEEEKAPYVDRALKKKEEYEITLQAYNK 115
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>HMGB3_MOUSE (O54879) High mobility group protein B3 (High mobility group|
           protein 4) (HMG-4) (High mobility group protein 2a)
           (HMG-2a)
          Length = 199

 Score = 36.6 bits (83), Expect = 0.045
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W +LS++EK P+V KA K K +Y K +A Y
Sbjct: 130 WNNLSDNEKQPYVTKAAKLKEKYEKDVADY 159
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>HMGB3_HUMAN (O15347) High mobility group protein B3 (High mobility group|
           protein 4) (HMG-4) (High mobility group protein 2a)
           (HMG-2a)
          Length = 199

 Score = 36.2 bits (82), Expect = 0.059
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W +L++SEK P++ KA K K +Y K +A Y
Sbjct: 130 WNNLNDSEKQPYITKAAKLKEKYEKDVADY 159
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>HMGT_ONCMY (P07746) High mobility group-T protein (HMG-T) (HMG-T1) (HMG-1)|
          Length = 204

 Score = 33.5 bits (75), Expect = 0.38
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY-NKG 433
           W +L+  +K P+  KA++ K +Y K I AY NKG
Sbjct: 132 WNNLTAEDKVPYEKKASRLKEKYEKDITAYRNKG 165
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>HMGB1_CHICK (P36194) High mobility group protein B1 (High mobility group|
           protein 1) (HMG-1)
          Length = 200

 Score = 32.7 bits (73), Expect = 0.65
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W +LS+ EK P+  KA K K +Y K +A Y
Sbjct: 129 WNNLSDGEKQPYNNKAAKLKEKYEKDVADY 158
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>HMGB3_CHICK (P40618) High mobility group protein B3 (High mobility group|
           protein 4) (HMG-4) (High mobility group protein 2a)
           (HMG-2a)
          Length = 201

 Score = 32.7 bits (73), Expect = 0.65
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W +LS+ EK P+  KA K K +Y K +A Y
Sbjct: 130 WNNLSDGEKQPYNNKAAKLKEKYEKDVADY 159
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>GCX1_RAT (Q76IQ7) Granulosa cell HMG box protein 1 (GCX-1)|
          Length = 473

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W SL E +K  +  K    K EY KA+AAY
Sbjct: 242 WDSLGEEQKQAYKRKTEAAKKEYLKALAAY 271
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>HMGB2_HUMAN (P26583) High mobility group protein B2 (High mobility group|
           protein 2) (HMG-2)
          Length = 208

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W   S  +K P+  KA K K +Y K IAAY
Sbjct: 132 WSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 161
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>CN092_HUMAN (O94842) Epidermal Langerhans cell protein LCP1|
          Length = 621

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W SL E +K  +  K    K EY KA+AAY
Sbjct: 261 WDSLGEEQKQVYKRKTEAAKKEYLKALAAY 290
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>CN092_RAT (Q99PM1) Epidermal Langerhans cell protein LCP1|
          Length = 619

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W SL E +K  +  K    K EY KA+AAY
Sbjct: 261 WDSLGEEQKQVYKRKTEAAKKEYLKALAAY 290
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>CN092_MOUSE (Q8BU11) Epidermal Langerhans cell protein LCP1|
          Length = 619

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W SL E +K  +  K    K EY KA+AAY
Sbjct: 261 WDSLGEEQKQVYKRKTEAAKKEYLKALAAY 290
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>HMGB2_RAT (P52925) High mobility group protein B2 (High mobility group|
           protein 2) (HMG-2)
          Length = 209

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W   S  +K P+  KA K K +Y K IAAY
Sbjct: 132 WSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 161
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>HMGB2_PIG (P17741) High mobility group protein B2 (High mobility group|
           protein 2) (HMG-2)
          Length = 209

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W   S  +K P+  KA K K +Y K IAAY
Sbjct: 132 WSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 161
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>HMGB2_MOUSE (P30681) High mobility group protein B2 (High mobility group|
           protein 2) (HMG-2)
          Length = 209

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W   S  +K P+  KA K K +Y K IAAY
Sbjct: 132 WSEQSAKDKQPYEQKAAKLKEKYEKDIAAY 161
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>HMG1X_HUMAN (Q9UGV6) High mobility group protein 1-like 10 (HMG-1L10)|
          Length = 211

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W + +  +K P+  KA K K +Y K IAAY
Sbjct: 133 WNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
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>HMGB1_CRIGR (P07156) High mobility group protein B1 (High mobility group|
           protein 1) (HMG-1) (Fragment)
          Length = 180

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W + +  +K P+  KA K K +Y K IAAY
Sbjct: 98  WNNTAADDKQPYEKKAAKLKEKYEKDIAAY 127
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>HMGB1_RAT (P63159) High mobility group protein B1 (High mobility group|
           protein 1) (HMG-1) (Amphoterin) (Heparin-binding protein
           p30)
          Length = 214

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W + +  +K P+  KA K K +Y K IAAY
Sbjct: 132 WNNTAADDKQPYEKKAAKLKEKYEKDIAAY 161
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>HMGB1_MOUSE (P63158) High mobility group protein B1 (High mobility group|
           protein 1) (HMG-1)
          Length = 214

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W + +  +K P+  KA K K +Y K IAAY
Sbjct: 132 WNNTAADDKQPYEKKAAKLKEKYEKDIAAY 161
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>HMGB1_MACFA (Q4R844) High mobility group protein B1 (High mobility group|
           protein 1) (HMG-1)
          Length = 214

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W + +  +K P+  KA K K +Y K IAAY
Sbjct: 132 WNNTAADDKQPYEKKAAKLKEKYEKDIAAY 161
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>HMGB1_HUMAN (P09429) High mobility group protein B1 (High mobility group|
           protein 1) (HMG-1)
          Length = 214

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W + +  +K P+  KA K K +Y K IAAY
Sbjct: 132 WNNTAADDKQPYEKKAAKLKEKYEKDIAAY 161
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>HMGB1_CANFA (Q6YKA4) High mobility group protein B1 (High mobility group|
           protein 1) (HMG-1)
          Length = 214

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W + +  +K P+  KA K K +Y K IAAY
Sbjct: 132 WNNTAADDKQPYEKKAAKLKEKYEKDIAAY 161
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>HMGB1_BOVIN (P10103) High mobility group protein B1 (High mobility group|
           protein 1) (HMG-1)
          Length = 214

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W + +  +K P+  KA K K +Y K IAAY
Sbjct: 132 WNNTAADDKQPYEKKAAKLKEKYEKDIAAY 161
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>SOX8_MOUSE (Q04886) Transcription factor SOX-8|
          Length = 464

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ LSESEK PFV +A + + ++ K
Sbjct: 137 WRLLSESEKRPFVEEAERLRVQHKK 161
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>SOX8_HUMAN (P57073) Transcription factor SOX-8|
          Length = 446

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ LSESEK PFV +A + + ++ K
Sbjct: 140 WRLLSESEKRPFVEEAERLRVQHKK 164
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>CMB1_SCHPO (Q10241) Mismatch-binding protein cmb1|
          Length = 223

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           WK L+E +K PF+ K+   K +Y+K
Sbjct: 191 WKELAEDKKKPFIDKSKALKEQYDK 215
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>HMGB1_PIG (P12682) High mobility group protein B1 (High mobility group|
           protein 1) (HMG-1)
          Length = 214

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W + +  +K P+  KA K K +Y K IAAY
Sbjct: 132 WNNTAADDKHPYEKKAAKLKEKYEKDIAAY 161
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>HDC_HUMAN (Q9UBI9) Headcase protein homolog (hHDC)|
          Length = 543

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 91  GAPAGGVLLAVLGCMSSAAGVP 26
           GA AGG L A  GC ++AAG P
Sbjct: 37  GAAAGGALAAAAGCGAAAAGAP 58
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>NHP6A_YEAST (P11632) Nonhistone chromosomal protein 6A|
          Length = 93

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAYN 439
           WK+L+  EK P+ AKA   K  Y      YN
Sbjct: 59  WKALTPEEKQPYEAKAQADKKRYESEKELYN 89
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>CH32_CHICK (P40671) SRY-related protein CH32 (Fragment)|
          Length = 54

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           WK LSE+EK P++ +A + + ++ K    Y
Sbjct: 21  WKLLSEAEKRPYIDEAKRLRAQHMKEYPEY 50
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>CH02_CHICK (P40666) SRY-related protein CH2 (Fragment)|
          Length = 54

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           WK LSE+EK PF+ +A + +  + K    Y
Sbjct: 21  WKLLSEAEKRPFIDEAKRLRASHMKEYPDY 50
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>CH01_CHICK (P40665) SRY-related protein CH1 (Fragment)|
          Length = 54

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           WK LSE+EK PF+ +A + +  + K    Y
Sbjct: 21  WKQLSEAEKRPFIDEAKRHRAMHMKEYPDY 50
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>SSRP1_CHICK (Q04678) Structure-specific recognition protein 1 (SSRP1)|
           (Recombination signal sequence recognition protein)
           (T160) (Fragment)
          Length = 669

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAYNKG 433
           WK++S+ +K  +  KA   K +Y KA+  Y+ G
Sbjct: 546 WKAMSKEKKEEWDRKAEDAKRDYEKAMKEYSVG 578
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>SOX8_TETNG (Q6IZ48) Transcription factor SOX-8|
          Length = 462

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ LSESEK PFV +A + + ++ K
Sbjct: 138 WRLLSESEKRPFVDEAERLRIQHKK 162
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>HMGH_STRPU (P40644) High mobility group protein 1 homolog|
          Length = 200

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W++++  EK PF   A K K  Y KA+A Y
Sbjct: 138 WRAMTAGEKIPFDKGAAKDKERYIKAMAEY 167
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>SOX9_MOUSE (Q04887) Transcription factor SOX-9|
          Length = 507

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ L+ESEK PFV +A + + ++ K
Sbjct: 143 WRLLNESEKRPFVEEAERLRVQHKK 167
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>SOX9_CHICK (P48434) Transcription factor SOX-9|
          Length = 494

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ L+ESEK PFV +A + + ++ K
Sbjct: 144 WRLLNESEKRPFVEEAERLRVQHKK 168
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>SOX9_CANFA (Q7YRJ7) Transcription factor SOX-9|
          Length = 513

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ L+ESEK PFV +A + + ++ K
Sbjct: 143 WRLLNESEKRPFVEEAERLRVQHKK 167
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>LPXK_NITWN (Q3SPI3) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 337

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 130 RPSVLL*RIALPVGAPAGGVLLAVLGCMSSAAGVPL 23
           RPS LL R+ +PVGA  G +    L      AGVP+
Sbjct: 9   RPSSLLSRLLIPVGALYGAIAARRLSRTGLRAGVPV 44
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>SOX8_CHICK (P57074) Transcription factor SOX-8|
          Length = 470

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ LSE+EK PFV +A + + ++ K
Sbjct: 147 WRLLSENEKRPFVEEAERLRVQHKK 171
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>SOX9_PONPY (P61754) Transcription factor SOX-9|
          Length = 509

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ L+ESEK PFV +A + + ++ K
Sbjct: 143 WRLLNESEKRPFVEEAERLRVQHKK 167
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>SOX9_PIG (O18896) Transcription factor SOX-9|
          Length = 509

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ L+ESEK PFV +A + + ++ K
Sbjct: 143 WRLLNESEKRPFVEEAERLRVQHKK 167
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>SOX9_PANTR (Q9BG89) Transcription factor SOX-9|
          Length = 509

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ L+ESEK PFV +A + + ++ K
Sbjct: 143 WRLLNESEKRPFVEEAERLRVQHKK 167
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>SOX9_MACMU (P61753) Transcription factor SOX-9|
          Length = 509

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ L+ESEK PFV +A + + ++ K
Sbjct: 143 WRLLNESEKRPFVEEAERLRVQHKK 167
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>SOX9_HUMAN (P48436) Transcription factor SOX-9|
          Length = 509

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ L+ESEK PFV +A + + ++ K
Sbjct: 143 WRLLNESEKRPFVEEAERLRVQHKK 167
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>SOX9_CALJA (Q9BG91) Transcription factor SOX-9|
          Length = 509

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           W+ L+ESEK PFV +A + + ++ K
Sbjct: 143 WRLLNESEKRPFVEEAERLRVQHKK 167
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>CH31_CHICK (P40670) SRY-related protein CH31 (Fragment)|
          Length = 54

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           WK LSE+EK PF+ +A + +  + K    Y
Sbjct: 21  WKLLSEAEKRPFIDEAKRLRAMHMKEYPNY 50
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>AMA3_ALLMI (P40643) SRY-related protein AMA3 (Fragment)|
          Length = 54

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           WK LSE+EK PF+ +A + +  + K    Y
Sbjct: 21  WKLLSEAEKRPFIDEAKRLRAMHMKEYPDY 50
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>AMA2_ALLMI (P40642) SRY-related protein AMA2 (Fragment)|
          Length = 54

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           WK LSE+EK PF+ +A + +  + K    Y
Sbjct: 21  WKLLSEAEKRPFIDEAKRLRAMHMKEYPNY 50
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>NHP10_YEAST (Q03435) Non-histone protein 10 (High mobility group protein 2)|
          Length = 203

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 534 GWKSLSESEKAPFVAKANKXKGEYNKAIAAYNK 436
           GWK+L+E ++ P+    ++ +  Y   +  YNK
Sbjct: 127 GWKNLNEQDRKPYYKLYSEDRERYQMEMEIYNK 159
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>SSRP1_RAT (Q04931) Structure-specific recognition protein 1 (SSRP1)|
           (Recombination signal sequence recognition protein)
           (T160)
          Length = 709

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAYNKG 433
           WK +S+ +K  +  KA   + EY KA+  Y  G
Sbjct: 585 WKGMSKEKKEEWDRKAEDARREYEKAMKEYEGG 617
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>HMGB2_CHICK (P26584) High mobility group protein B2 (High mobility group|
           protein 2) (HMG-2)
          Length = 206

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAY 442
           W      +K P+  KA K K +Y K IAAY
Sbjct: 132 WSEQLAKDKQPYEQKAAKLKEKYEKDIAAY 161
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>SOX14_MOUSE (Q04892) Transcription factor SOX-14|
          Length = 240

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           WK LSE+EK P++ +A + + ++ K
Sbjct: 46  WKLLSEAEKRPYIDEAKRLRAQHMK 70
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>SOX14_MACFA (P61259) Transcription factor SOX-14|
          Length = 240

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           WK LSE+EK P++ +A + + ++ K
Sbjct: 46  WKLLSEAEKRPYIDEAKRLRAQHMK 70
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>SOX14_HUMAN (O95416) Transcription factor SOX-14|
          Length = 240

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           WK LSE+EK P++ +A + + ++ K
Sbjct: 46  WKLLSEAEKRPYIDEAKRLRAQHMK 70
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>SOX14_CHICK (Q9W7R6) Transcription factor SOX-14 (SRY-related protein CH60)|
          Length = 240

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNK 457
           WK LSE+EK P++ +A + + ++ K
Sbjct: 46  WKLLSEAEKRPYIDEAKRLRAQHMK 70
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>SSRP1_MOUSE (Q08943) Structure-specific recognition protein 1 (SSRP1)|
           (Recombination signal sequence recognition protein)
           (T160)
          Length = 708

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAYNKG 433
           WK +S+ +K  +  KA   + EY KA+  Y  G
Sbjct: 585 WKGMSKEKKEEWDRKAEDARREYEKAMKEYEGG 617
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>NHP6B_YEAST (P11633) Nonhistone chromosomal protein 6B|
          Length = 99

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAYN 439
           WK+L+  EK P+ +KA   K  Y      YN
Sbjct: 65  WKALTAEEKQPYESKAQADKKRYESEKELYN 95
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>HMGC_TETTH (P11873) High mobility group protein C (Nonhistone chromosomal|
           protein LG-1)
          Length = 100

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 531 WKSLSESEKAPFVAKANKXKGEYNKAIAAYNK 436
           WK++ E EK  +    ++ K +Y K + AY K
Sbjct: 50  WKAVGEKEKKKYETLQSEAKAKYEKDMQAYEK 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,354,355
Number of Sequences: 219361
Number of extensions: 834952
Number of successful extensions: 3093
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 2967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3093
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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