| Clone Name | rbags14a20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148P20, full insert sequence Length = 713 Score = 416 bits (210), Expect = e-113 Identities = 339/382 (88%) Strand = Plus / Minus Query: 220 tagcaccagcggatgtcttcccattgacggcgatgagctccgtgtcgaaaaccagagtcg 279 |||||||| ||| |||||| |||||||||||||| ||||||||||| || | || || | Sbjct: 474 tagcaccaccggttgtctttccattgacggcgataagctccgtgtcaaagattagtgttg 415 Query: 280 ctccacctggaatctttggtggggagcctcgctcgccgtaacccatctttgcgggtattc 339 |||||||||||||||| ||||||||||||| ||| || |||||||||||||| ||||| Sbjct: 414 ctccacctggaatcttcggtggggagcctctctccccataacccatctttgcaggtatct 355 Query: 340 ttagcttccgcttttcgccgacacacatacctagtaacccttggtcccaaccttttatca 399 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 354 ttagcttcctcttttcaccgacacacatacctagtaacccttggtcccaaccttttatca 295 Query: 400 cctggccattcccaagagtaaattcgaagggatcacctctgtcgtagctagaatcaaata 459 | ||||| || |||||||||||||| ||||| ||||||||||| |||||||||||||| | Sbjct: 294 cttggccgtttccaagagtaaattcaaaggggtcacctctgtcatagctagaatcaaaca 235 Query: 460 ctgatccgtcagtgagtgacccacgataatgcactttaatcttgtcccccttgtgagctt 519 ||||||| ||||||||||||||||||||||||||||| || ||||| || |||||||||| Sbjct: 234 ctgatccatcagtgagtgacccacgataatgcactttgattttgtctcctttgtgagctt 175 Query: 520 gtaaggtacacgattcaggcttgtacttgacgccgatctggagctgcgtaacatccccgg 579 | | ||| || || || ||||||||||| || |||||||| |||| ||| ||||| |||| Sbjct: 174 gcagggtgcatgactctggcttgtacttcacaccgatctgaagctccgtgacatctccgg 115 Query: 580 acttcttggccgaagcggtcag 601 |||||||||||||||||||||| Sbjct: 114 acttcttggccgaagcggtcag 93
>ref|NM_189935.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 432 Score = 404 bits (204), Expect = e-109 Identities = 333/376 (88%) Strand = Plus / Minus Query: 220 tagcaccagcggatgtcttcccattgacggcgatgagctccgtgtcgaaaaccagagtcg 279 |||||||| ||| |||||| |||||||||||||| ||||||||||| || | || || | Sbjct: 415 tagcaccaccggttgtctttccattgacggcgataagctccgtgtcaaagattagtgttg 356 Query: 280 ctccacctggaatctttggtggggagcctcgctcgccgtaacccatctttgcgggtattc 339 |||||||||||||||| ||||||||||||| ||| || |||||||||||||| ||||| Sbjct: 355 ctccacctggaatcttcggtggggagcctctctccccataacccatctttgcaggtatct 296 Query: 340 ttagcttccgcttttcgccgacacacatacctagtaacccttggtcccaaccttttatca 399 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 ttagcttcctcttttcaccgacacacatacctagtaacccttggtcccaaccttttatca 236 Query: 400 cctggccattcccaagagtaaattcgaagggatcacctctgtcgtagctagaatcaaata 459 | ||||| || |||||||||||||| ||||| ||||||||||| |||||||||||||| | Sbjct: 235 cttggccgtttccaagagtaaattcaaaggggtcacctctgtcatagctagaatcaaaca 176 Query: 460 ctgatccgtcagtgagtgacccacgataatgcactttaatcttgtcccccttgtgagctt 519 ||||||| ||||||||||||||||||||||||||||| || ||||| || |||||||||| Sbjct: 175 ctgatccatcagtgagtgacccacgataatgcactttgattttgtctcctttgtgagctt 116 Query: 520 gtaaggtacacgattcaggcttgtacttgacgccgatctggagctgcgtaacatccccgg 579 | | ||| || || || ||||||||||| || |||||||| |||| ||| ||||| |||| Sbjct: 115 gcagggtgcatgactctggcttgtacttcacaccgatctgaagctccgtgacatctccgg 56 Query: 580 acttcttggccgaagc 595 |||||||||||||||| Sbjct: 55 acttcttggccgaagc 40
>gb|AY111350.1| Zea mays CL38842_-2 mRNA sequence Length = 526 Score = 157 bits (79), Expect = 6e-35 Identities = 172/207 (83%) Strand = Plus / Plus Query: 231 gatgtcttcccattgacggcgatgagctccgtgtcgaaaaccagagtcgctccacctgga 290 ||||||||||| ||||||| ||| ||||||| |||||| |||||||||||||| |||||| Sbjct: 320 gatgtcttcccgttgacggggataagctccgggtcgaagaccagagtcgctccgcctgga 379 Query: 291 atctttggtggggagcctcgctcgccgtaacccatctttgcgggtattcttagcttccgc 350 ||||| ||||||||||||| || ||||||||||| ||||| |||||||||| Sbjct: 380 atcttcnnnnnnnagcctcgctcgccatagcccatctttgcaggtatctttagcttccgn 439 Query: 351 ttttcgccgacacacatacctagtaacccttggtcccaaccttttatcacctggccattc 410 | ||||| ||||||||||| || |||||| |||| ||||||||||| |||||||| Sbjct: 440 nnnncaccgacgcacatacctagcaatccttggccccagccttttatcacttggccattt 499 Query: 411 ccaagagtaaattcgaagggatcacct 437 |||||||||||||| || || |||||| Sbjct: 500 ccaagagtaaattcaaacgggtcacct 526
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 145 bits (73), Expect = 2e-31 Identities = 100/109 (91%) Strand = Plus / Plus Query: 284 acctggaatctttggtggggagcctcgctcgccgtaacccatctttgcgggtattcttag 343 |||||||||||| ||||||||||||| ||| || |||||||||||||| ||||| |||| Sbjct: 39907939 acctggaatcttcggtggggagcctctctccccataacccatctttgcaggtatctttag 39907998 Query: 344 cttccgcttttcgccgacacacatacctagtaacccttggtcccaacct 392 ||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct: 39907999 cttcctcttttcaccgacacacatacctagtaacccttggtcccaacct 39908047 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 388 aaccttttatcacctggccattcccaagagtaaattcgaagggatcacctctgtcgtagc 447 ||||||||||||| ||||| || |||||||||||||| ||||| ||||||||||| |||| Sbjct: 39908209 aaccttttatcacttggccgtttccaagagtaaattcaaaggggtcacctctgtcatagc 39908268 Query: 448 tagaatcaaatactgatccgtcagtgagtgaccc 481 |||||||||| |||||||| |||||||||||||| Sbjct: 39908269 tagaatcaaacactgatccatcagtgagtgaccc 39908302 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 220 tagcaccagcggatgtcttcccattgacggcgatgagctccgtgtc 265 |||||||| ||| |||||| |||||||||||||| ||||||||||| Sbjct: 39907688 tagcaccaccggttgtctttccattgacggcgataagctccgtgtc 39907733 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 552 ccgatctggagctgcgtaacatccccggacttcttggccgaagc 595 |||||||| |||| ||| ||||| |||||||||||||||||||| Sbjct: 39909455 ccgatctgaagctccgtgacatctccggacttcttggccgaagc 39909498 Score = 52.0 bits (26), Expect = 0.003 Identities = 56/66 (84%) Strand = Plus / Plus Query: 481 cacgataatgcactttaatcttgtcccccttgtgagcttgtaaggtacacgattcaggct 540 |||||||||||||||| || ||||| || ||||||||||| | ||| || || || |||| Sbjct: 39908786 cacgataatgcactttgattttgtctcctttgtgagcttgcagggtgcatgactctggct 39908845 Query: 541 tgtact 546 |||||| Sbjct: 39908846 tgtact 39908851
>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004D12 Length = 138136 Score = 145 bits (73), Expect = 2e-31 Identities = 100/109 (91%) Strand = Plus / Plus Query: 284 acctggaatctttggtggggagcctcgctcgccgtaacccatctttgcgggtattcttag 343 |||||||||||| ||||||||||||| ||| || |||||||||||||| ||||| |||| Sbjct: 88647 acctggaatcttcggtggggagcctctctccccataacccatctttgcaggtatctttag 88706 Query: 344 cttccgcttttcgccgacacacatacctagtaacccttggtcccaacct 392 ||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct: 88707 cttcctcttttcaccgacacacatacctagtaacccttggtcccaacct 88755 Score = 123 bits (62), Expect = 8e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 388 aaccttttatcacctggccattcccaagagtaaattcgaagggatcacctctgtcgtagc 447 ||||||||||||| ||||| || |||||||||||||| ||||| ||||||||||| |||| Sbjct: 88917 aaccttttatcacttggccgtttccaagagtaaattcaaaggggtcacctctgtcatagc 88976 Query: 448 tagaatcaaatactgatccgtcagtgagtgaccc 481 |||||||||| |||||||| |||||||||||||| Sbjct: 88977 tagaatcaaacactgatccatcagtgagtgaccc 89010 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 220 tagcaccagcggatgtcttcccattgacggcgatgagctccgtgtc 265 |||||||| ||| |||||| |||||||||||||| ||||||||||| Sbjct: 88396 tagcaccaccggttgtctttccattgacggcgataagctccgtgtc 88441 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 552 ccgatctggagctgcgtaacatccccggacttcttggccgaagc 595 |||||||| |||| ||| ||||| |||||||||||||||||||| Sbjct: 90163 ccgatctgaagctccgtgacatctccggacttcttggccgaagc 90206 Score = 52.0 bits (26), Expect = 0.003 Identities = 56/66 (84%) Strand = Plus / Plus Query: 481 cacgataatgcactttaatcttgtcccccttgtgagcttgtaaggtacacgattcaggct 540 |||||||||||||||| || ||||| || ||||||||||| | ||| || || || |||| Sbjct: 89494 cacgataatgcactttgattttgtctcctttgtgagcttgcagggtgcatgactctggct 89553 Query: 541 tgtact 546 |||||| Sbjct: 89554 tgtact 89559
>gb|AY105607.1| Zea mays PCO107138 mRNA sequence Length = 808 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 432 tcacctctgtcgtagctagaatcaaatactgatccgtcagtgagtgacccacgataatgc 491 |||||||| || ||||| |||||||| || | ||| ||||| ||| ||||| || || Sbjct: 316 tcacctctttcatagcttgaatcaaaaaccgttccatcagtaagttttccacggtagtga 257 Query: 492 actttaatcttgtcccccttgtgagcttgtaaggtacacgattcaggcttgtacttgacg 551 ||||||| |||||| || ||||||||||| | | | || ||||| ||||||||||||||| Sbjct: 256 actttaaccttgtcacctttgtgagcttgaatgctgcatgattccggcttgtacttgacg 197 Query: 552 ccgatctggagctgcgtaacatccccggacttcttggccg 591 ||||||||||||| || || |||||||| |||||||||| Sbjct: 196 ccgatctggagctccgacacgtccccggatttcttggccg 157
>dbj|AK063115.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-D12, full insert sequence Length = 683 Score = 77.8 bits (39), Expect = 4e-11 Identities = 138/171 (80%) Strand = Plus / Minus Query: 419 aaattcgaagggatcacctctgtcgtagctagaatcaaatactgatccgtcagtgagtga 478 |||||||| || |||||||| || |||||||||||||| ||| ||| ||||| ||| Sbjct: 279 aaattcgattgggtcacctctttcatagctagaatcaaaatctgttccatcagtaagttt 220 Query: 479 cccacgataatgcactttaatcttgtcccccttgtgagcttgtaaggtacacgattcagg 538 ||||| || || ||||||| |||| || ||||||||||| | | | || ||||| || Sbjct: 219 tccacggtagtgaactttaactctgtcgcctttgtgagcttgaatgctgcaggattctgg 160 Query: 539 cttgtacttgacgccgatctggagctgcgtaacatccccggacttcttggc 589 ||||| |||||||||||||||||||| ||| || || ||||| |||||||| Sbjct: 159 cttgtgcttgacgccgatctggagctccgtcacgtcgccggatttcttggc 109
>emb|AJ495769.1|HVU495769 Hordeum vulgare mRNA for putative immunophilin Length = 835 Score = 61.9 bits (31), Expect = 3e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 528 cacgattcaggcttgtacttgacgccgatctggag 562 |||||||| |||||||||||||||||||||||||| Sbjct: 216 cacgattctggcttgtacttgacgccgatctggag 182
>dbj|AK107496.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D08, full insert sequence Length = 833 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 552 ccgatctggagctgcgtaacatccccggacttcttggccgaagcggtcag 601 |||||||| |||| ||| ||||| |||||||||||||||||||| ||||| Sbjct: 471 ccgatctgaagctccgtgacatctccggacttcttggccgaagctgtcag 422
>gb|AC104847.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0480H08, complete sequence Length = 156301 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 552 ccgatctggagctgcgtaacatccccggacttcttggccgaagc 595 |||||||| |||| ||| ||||| |||||||||||||||||||| Sbjct: 34892 ccgatctgaagctccgtgacatctccggacttcttggccgaagc 34849
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 552 ccgatctggagctgcgtaacatccccggacttcttggccgaagc 595 |||||||| |||| ||| ||||| |||||||||||||||||||| Sbjct: 21277420 ccgatctgaagctccgtgacatctccggacttcttggccgaagc 21277377 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 606 acggccgcgacggcgacgacggcga 630 ||||| ||||||||||||||||||| Sbjct: 23338335 acggcggcgacggcgacgacggcga 23338311 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 612 gcgacggcgacgacggcgagg 632 ||||||||||||||||||||| Sbjct: 20276713 gcgacggcgacgacggcgagg 20276693 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 613 cgacggcgacgacggcgagg 632 |||||||||||||||||||| Sbjct: 7487879 cgacggcgacgacggcgagg 7487898
>dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413C03 Length = 162161 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 552 ccgatctggagctgcgtaacatccccggacttcttggccgaagc 595 |||||||| |||| ||| ||||| |||||||||||||||||||| Sbjct: 906 ccgatctgaagctccgtgacatctccggacttcttggccgaagc 949 Score = 52.0 bits (26), Expect = 0.003 Identities = 56/66 (84%) Strand = Plus / Plus Query: 481 cacgataatgcactttaatcttgtcccccttgtgagcttgtaaggtacacgattcaggct 540 |||||||||||||||| || ||||| || ||||||||||| | ||| || || || |||| Sbjct: 237 cacgataatgcactttgattttgtctcctttgtgagcttgcagggtgcatgactctggct 296 Query: 541 tgtact 546 |||||| Sbjct: 297 tgtact 302
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 552 ccgatctggagctgcgtaacatccccggacttcttggccgaagc 595 |||||||| |||| ||| ||||| |||||||||||||||||||| Sbjct: 21587619 ccgatctgaagctccgtgacatctccggacttcttggccgaagc 21587576 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 606 acggccgcgacggcgacgacggcga 630 ||||| ||||||||||||||||||| Sbjct: 23648245 acggcggcgacggcgacgacggcga 23648221 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 612 gcgacggcgacgacggcgagg 632 ||||||||||||||||||||| Sbjct: 20586953 gcgacggcgacgacggcgagg 20586933 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 613 cgacggcgacgacggcgagg 632 |||||||||||||||||||| Sbjct: 7557965 cgacggcgacgacggcgagg 7557984
>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBb0004A05, complete sequence Length = 157913 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Plus Query: 545 cttgacgccgatctggagctgcgtaacatccccggacttcttggc 589 |||||||||||||||||||| ||| || || ||||| |||||||| Sbjct: 56406 cttgacgccgatctggagctccgtcacgtcgccggatttcttggc 56450
>ref|XM_215196.2| PREDICTED: Rattus norvegicus similar to binding protein (LOC293702), mRNA Length = 651 Score = 46.1 bits (23), Expect = 0.15 Identities = 56/67 (83%) Strand = Plus / Minus Query: 341 tagcttccgcttttcgccgacacacatacctagtaacccttggtcccaaccttttatcac 400 ||||||||||||||| || ||||||| || |||| ||| |||||||| || || || || Sbjct: 456 tagcttccgcttttccccttcacacatccccagtagcccctggtcccagcccttgatgac 397 Query: 401 ctggcca 407 ||||||| Sbjct: 396 ctggcca 390
>ref|XM_469447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1293 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 612 gcgacggcgacgacggcgaggc 633 |||||||||||||||||||||| Sbjct: 986 gcgacggcgacgacggcgaggc 1007
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 ttcccattgacggcgatgagct 258 |||||||||||||||||||||| Sbjct: 44523 ttcccattgacggcgatgagct 44544
>gb|AY023221.1| Oryza sativa microsatellite MRG5546 containing (GCT)X9, closest to marker G132, genomic sequence Length = 227 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 605 gacggccgcgacggcgacgacg 626 |||||||||||||||||||||| Sbjct: 169 gacggccgcgacggcgacgacg 148
>gb|AY022473.1| Oryza sativa microsatellite MRG4798 containing (AGC)X9, closest to marker G132, genomic sequence Length = 227 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 605 gacggccgcgacggcgacgacg 626 |||||||||||||||||||||| Sbjct: 59 gacggccgcgacggcgacgacg 80
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 612 gcgacggcgacgacggcgaggc 633 |||||||||||||||||||||| Sbjct: 28000249 gcgacggcgacgacggcgaggc 28000270 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 605 gacggccgcgacggcgacgacggcg 629 |||||| |||||||||||||||||| Sbjct: 26935090 gacggcggcgacggcgacgacggcg 26935066 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 610 ccgcgacggcgacgacggcgaggc 633 |||||||| ||||||||||||||| Sbjct: 33820322 ccgcgacgacgacgacggcgaggc 33820345 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 610 ccgcgacggcgacgacggcgaggc 633 |||||||| ||||||||||||||| Sbjct: 33804467 ccgcgacgacgacgacggcgaggc 33804490 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 ggacggccgcgacggcgacg 623 |||||||||||||||||||| Sbjct: 17436291 ggacggccgcgacggcgacg 17436272
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 612 gcgacggcgacgacggcgaggc 633 |||||||||||||||||||||| Sbjct: 24777 gcgacggcgacgacggcgaggc 24756
>gb|AY449658.1| Cryptococcus neoformans var. neoformans alpha-aminoadipate reductase (LYS2) gene, partial cds Length = 4235 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 ttcccattgacggcgatgagct 258 |||||||||||||||||||||| Sbjct: 2301 ttcccattgacggcgatgagct 2322
>ref|XM_571745.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 4279 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 ttcccattgacggcgatgagct 258 |||||||||||||||||||||| Sbjct: 2372 ttcccattgacggcgatgagct 2393
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Plus Query: 607 cggccgcgacggcgacgacggcgagg 632 |||| ||||||||||||||||||||| Sbjct: 16027450 cggcggcgacggcgacgacggcgagg 16027475
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 607 cggccgcgacggcgacgacggcgagg 632 |||| ||||||||||||||||||||| Sbjct: 11110962 cggcggcgacggcgacgacggcgagg 11110937 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 cgcgacggcgacgacggcga 630 |||||||||||||||||||| Sbjct: 1774941 cgcgacggcgacgacggcga 1774960
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 612 gcgacggcgacgacggcgaggc 633 |||||||||||||||||||||| Sbjct: 28091573 gcgacggcgacgacggcgaggc 28091594 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 605 gacggccgcgacggcgacgacggcg 629 |||||| |||||||||||||||||| Sbjct: 27026413 gacggcggcgacggcgacgacggcg 27026389 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 610 ccgcgacggcgacgacggcgaggc 633 |||||||| ||||||||||||||| Sbjct: 33910794 ccgcgacgacgacgacggcgaggc 33910817 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 610 ccgcgacggcgacgacggcgaggc 633 |||||||| ||||||||||||||| Sbjct: 33894939 ccgcgacgacgacgacggcgaggc 33894962 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 ggacggccgcgacggcgacg 623 |||||||||||||||||||| Sbjct: 17429832 ggacggccgcgacggcgacg 17429813
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 605 gacggccgcgacggcgacgacg 626 |||||||||||||||||||||| Sbjct: 18739584 gacggccgcgacggcgacgacg 18739563
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 377 cccttggtcccaaccttttatcacctggcc 406 ||||| |||||||||||| ||||||||||| Sbjct: 538882 cccttcgtcccaacctttgatcacctggcc 538853
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 610 ccgcgacggcgacgacggcgag 631 |||||||||||||||||||||| Sbjct: 3103036 ccgcgacggcgacgacggcgag 3103015
>dbj|AP005497.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0071O21 Length = 158410 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 605 gacggccgcgacggcgacgacg 626 |||||||||||||||||||||| Sbjct: 82226 gacggccgcgacggcgacgacg 82205
>dbj|AP005685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0004P20 Length = 160410 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 607 cggccgcgacggcgacgacggcgagg 632 |||| ||||||||||||||||||||| Sbjct: 69769 cggcggcgacggcgacgacggcgagg 69744
>dbj|AB012245.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRA19 Length = 86722 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 378 ccttggtcccaaccttttatcacctg 403 ||||| |||||||||||||||||||| Sbjct: 35570 ccttgatcccaaccttttatcacctg 35545
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Plus Query: 607 cggccgcgacggcgacgacggcgagg 632 |||| ||||||||||||||||||||| Sbjct: 15980683 cggcggcgacggcgacgacggcgagg 15980708
>emb|AL772415.6|CNS08C9T Oryza sativa chromosome 12, . BAC OSJNBa0060H23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153350 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Plus Query: 607 cggccgcgacggcgacgacggcgagg 632 |||| ||||||||||||||||||||| Sbjct: 94863 cggcggcgacggcgacgacggcgagg 94888
>ref|NM_123935.3| Arabidopsis thaliana FK506 binding / peptidyl-prolyl cis-trans isomerase AT5G45680 mRNA, complete cds Length = 794 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 378 ccttggtcccaaccttttatcacct 402 ||||| ||||||||||||||||||| Sbjct: 469 ccttgatcccaaccttttatcacct 445
>ref|XM_469319.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1623 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 605 gacggccgcgacggcgacgacggcg 629 |||||| |||||||||||||||||| Sbjct: 1576 gacggcggcgacggcgacgacggcg 1600
>gb|AC147801.7| Mus musculus chromosome 7, clone RP24-282E23, complete sequence Length = 149925 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 ctctctttctgtctcctttatcctt 27 ||||||||||||||||||| ||||| Sbjct: 132089 ctctctttctgtctcctttttcctt 132065
>gb|AY439950.1| Armigeres subalbatus ASAP ID: 41193 peptidyl-prolyl cis-trans isomerase mRNA sequence Length = 758 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 cgcttttcgccgacacacata 368 ||||||||||||||||||||| Sbjct: 448 cgcttttcgccgacacacata 428
>gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0542B04, complete sequence Length = 182823 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 612 gcgacggcgacgacggcgagg 632 ||||||||||||||||||||| Sbjct: 121226 gcgacggcgacgacggcgagg 121206
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 611 cgcgacggcgacgacggcgag 631 ||||||||||||||||||||| Sbjct: 1253886 cgcgacggcgacgacggcgag 1253866
>ref|XM_362217.1| Magnaporthe grisea 70-15 hypothetical protein (MG04662.4) partial cds Length = 1254 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 605 gacggccgcgacggcgacgac 625 ||||||||||||||||||||| Sbjct: 761 gacggccgcgacggcgacgac 741
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 611 cgcgacggcgacgacggcgag 631 ||||||||||||||||||||| Sbjct: 2251477 cgcgacggcgacgacggcgag 2251497
>gb|BC043844.1| Xenopus laevis similar to FK506 binding protein 2 (13 kDa), mRNA (cDNA clone MGC:53657 IMAGE:4887866), complete cds Length = 642 Score = 42.1 bits (21), Expect = 2.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 361 cacacatacctagtaacccttggtcccaaccttttat 397 ||||||| || ||||||||||||||||| || ||||| Sbjct: 333 cacacattccaagtaacccttggtcccagccctttat 297
>gb|AC109210.26| Mus musculus chromosome 7, clone RP23-9C7, complete sequence Length = 236592 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 ctctctttctgtctcctttatcctt 27 ||||||||||||||||||| ||||| Sbjct: 161604 ctctctttctgtctcctttttcctt 161628
>emb|AL357373.8| Human DNA sequence from clone RP11-414C16 on chromosome 1 Contains part of the DAB1 gene for disabled homolog 1 (Drosophila) and a novel pseudogene, complete sequence Length = 87340 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 ttctctctttctgtctccttt 21 ||||||||||||||||||||| Sbjct: 16635 ttctctctttctgtctccttt 16655
>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034K24, complete sequence Length = 142852 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 606 acggccgcgacggcgacgacggcga 630 ||||| ||||||||||||||||||| Sbjct: 48640 acggcggcgacggcgacgacggcga 48664
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete sequence Length = 149303 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 605 gacggccgcgacggcgacgacggcg 629 |||||| |||||||||||||||||| Sbjct: 114090 gacggcggcgacggcgacgacggcg 114066
>emb|X99936.1|ZMSEE1 Z.mays mRNA for cysteine proteinase, See1 Length = 1412 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 608 ggccgcgacggcgacgacggcgagg 632 |||||||| |||||||||||||||| Sbjct: 110 ggccgcgagggcgacgacggcgagg 86
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 611 cgcgacggcgacgacggcgag 631 ||||||||||||||||||||| Sbjct: 2123232 cgcgacggcgacgacggcgag 2123212
>emb|AJ490171.1|ATH490171 Arabidopsis thaliana chloroplast mRNA for FK506 binding protein 1 (fkbp13 gene) Length = 773 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 378 ccttggtcccaaccttttatcacct 402 ||||| ||||||||||||||||||| Sbjct: 465 ccttgatcccaaccttttatcacct 441
>emb|AJ242483.1|ATH242483 Arabidopsis thaliana mRNA for partial FKBP like protein, (fkbpk gene) Length = 229 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 378 ccttggtcccaaccttttatcacct 402 ||||| ||||||||||||||||||| Sbjct: 155 ccttgatcccaaccttttatcacct 131
>gb|AY091680.1| Arabidopsis thaliana AT5g45680/MRA19_7 mRNA, complete cds Length = 627 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 378 ccttggtcccaaccttttatcacct 402 ||||| ||||||||||||||||||| Sbjct: 455 ccttgatcccaaccttttatcacct 431
>gb|AY065047.1| Arabidopsis thaliana AT5g45680/MRA19_7 mRNA, complete cds Length = 801 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 378 ccttggtcccaaccttttatcacct 402 ||||| ||||||||||||||||||| Sbjct: 472 ccttgatcccaaccttttatcacct 448
>gb|BC108190.1| Bos taurus similar to FK506-binding protein 2 precursor (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (13 kDa FKBP) (FKBP-13), mRNA (cDNA clone MGC:133593 IMAGE:8065216), complete cds Length = 509 Score = 42.1 bits (21), Expect = 2.4 Identities = 54/65 (83%) Strand = Plus / Minus Query: 342 agcttccgcttttcgccgacacacatacctagtaacccttggtcccaaccttttatcacc 401 |||||||||||||| || ||||||| ||||| | ||| |||||||| || || || ||| Sbjct: 320 agcttccgcttttccccctcacacatccctagcagcccctggtcccagcccttgatgacc 261 Query: 402 tggcc 406 ||||| Sbjct: 260 tggcc 256
>gb|AC090848.4| Homo sapiens chromosome 11, clone RP11-780O24, complete sequence Length = 169559 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 cttggtcccaaccttttatca 399 ||||||||||||||||||||| Sbjct: 146434 cttggtcccaaccttttatca 146414
>gb|AC129176.6| Mus musculus BAC clone RP23-124D10 from chromosome unknown, complete sequence Length = 211031 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 ctctctttctgtctcctttatcctt 27 ||||||||||||||||||| ||||| Sbjct: 110198 ctctctttctgtctcctttttcctt 110222
>gb|AC133942.3| Mus musculus BAC clone RP23-472J11 from chromosome 7, complete sequence Length = 186014 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 ctctctttctgtctcctttatcctt 27 ||||||||||||||||||| ||||| Sbjct: 22755 ctctctttctgtctcctttttcctt 22779
>dbj|AB040452.1| Shuttle vector pRES19 DNA, complete sequence Length = 6140 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 610 ccgcgacggcgacgacggcga 630 ||||||||||||||||||||| Sbjct: 759 ccgcgacggcgacgacggcga 779
>dbj|AK120965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040E06, full insert sequence Length = 2486 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 606 acggccgcgacggcgacgacggcga 630 ||||| ||||||||||||||||||| Sbjct: 234 acggcggcgacggcgacgacggcga 210
>emb|AJ494982.1|ZMA494982 Zea mays partial see1 gene for cysteine protease, promoter region and 5' coding region Length = 3402 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 608 ggccgcgacggcgacgacggcgagg 632 |||||||| |||||||||||||||| Sbjct: 3321 ggccgcgagggcgacgacggcgagg 3297
>dbj|AK106886.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-F11, full insert sequence Length = 1028 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 605 gacggccgcgacggcgacgacggcg 629 |||||| |||||||||||||||||| Sbjct: 836 gacggcggcgacggcgacgacggcg 860
>gb|AC149271.5| Mus musculus chromosome 7, clone RP23-216J17, complete sequence Length = 213512 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 ctctctttctgtctcctttatcctt 27 ||||||||||||||||||| ||||| Sbjct: 191720 ctctctttctgtctcctttttcctt 191696
>gb|AY106223.1| Zea mays PCO114759 mRNA sequence Length = 1532 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 608 ggccgcgacggcgacgacggcgagg 632 |||||||| |||||||||||||||| Sbjct: 132 ggccgcgagggcgacgacggcgagg 108
>gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete sequence Length = 77605 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 606 acggccgcgacggcgacgacggcga 630 ||||| ||||||||||||||||||| Sbjct: 41329 acggcggcgacggcgacgacggcga 41353
>gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F19 php20725 region, complete sequence Length = 70311 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 606 acggccgcgacggcgacgacggcga 630 ||||| ||||||||||||||||||| Sbjct: 27633 acggcggcgacggcgacgacggcga 27657
>dbj|AP001652.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-780O24, complete sequences Length = 169560 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 cttggtcccaaccttttatca 399 ||||||||||||||||||||| Sbjct: 23126 cttggtcccaaccttttatca 23146
>gb|BC108494.1| Xenopus laevis similar to FK506 binding protein 2 (13 kDa), mRNA (cDNA clone MGC:130827 IMAGE:7974306), complete cds Length = 1966 Score = 42.1 bits (21), Expect = 2.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 361 cacacatacctagtaacccttggtcccaaccttttat 397 ||||||| || ||||||||||||||||| || ||||| Sbjct: 483 cacacattccaagtaacccttggtcccagccctttat 447
>ref|NM_001037481.1| Bos taurus similar to FK506-binding protein 2 precursor (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (13 kDa FKBP) (FKBP-13) (MGC133593), mRNA Length = 509 Score = 42.1 bits (21), Expect = 2.4 Identities = 54/65 (83%) Strand = Plus / Minus Query: 342 agcttccgcttttcgccgacacacatacctagtaacccttggtcccaaccttttatcacc 401 |||||||||||||| || ||||||| ||||| | ||| |||||||| || || || ||| Sbjct: 320 agcttccgcttttccccctcacacatccctagcagcccctggtcccagcccttgatgacc 261 Query: 402 tggcc 406 ||||| Sbjct: 260 tggcc 256
>gb|AF485239.1| Begonia mannii internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 665 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 626 ggcgaggcagaggaaccgcg 645 |||||||||||||||||||| Sbjct: 176 ggcgaggcagaggaaccgcg 157
>gb|AC164094.5| Mus musculus BAC clone RP23-133F10 from chromosome 6, complete sequence Length = 216271 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 atcttgtcccccttgtgagcttgt 521 |||||||||||| ||||||||||| Sbjct: 43434 atcttgtcccccctgtgagcttgt 43411
>ref|XM_470079.1| Oryza sativa (japonica cultivar-group), mRNA Length = 531 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 610 ccgcgacggcgacgacggcgaggc 633 |||||||| ||||||||||||||| Sbjct: 58 ccgcgacgacgacgacggcgaggc 35
>ref|XM_470074.1| Oryza sativa (japonica cultivar-group), mRNA Length = 510 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 610 ccgcgacggcgacgacggcgaggc 633 |||||||| ||||||||||||||| Sbjct: 276 ccgcgacgacgacgacggcgaggc 299
>ref|XM_450113.1| Oryza sativa (japonica cultivar-group), mRNA Length = 867 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 cgcgacggcgacgacggcga 630 |||||||||||||||||||| Sbjct: 140 cgcgacggcgacgacggcga 121
>ref|XM_468738.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1496 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 ggacggccgcgacggcgacg 623 |||||||||||||||||||| Sbjct: 965 ggacggccgcgacggcgacg 984
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 607 cggccgcgacggcgacgacg 626 |||||||||||||||||||| Sbjct: 673822 cggccgcgacggcgacgacg 673803
>gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0084F23, complete sequence Length = 89829 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 cgacggcgacgacggcgagg 632 |||||||||||||||||||| Sbjct: 70222 cgacggcgacgacggcgagg 70203
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 ggacggccgcgacggcgacg 623 |||||||||||||||||||| Sbjct: 127452 ggacggccgcgacggcgacg 127471
>ref|XM_675883.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7706.2), mRNA Length = 987 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 610 ccgcgacggcgacgacggcg 629 |||||||||||||||||||| Sbjct: 644 ccgcgacggcgacgacggcg 625
>ref|XM_656866.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4354.2), mRNA Length = 687 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 609 gccgcgacggcgacgacggcgagg 632 |||||||||||||||| ||||||| Sbjct: 53 gccgcgacggcgacgagggcgagg 30
>gb|AY429319.1| Begonia mannii internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 662 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 626 ggcgaggcagaggaaccgcg 645 |||||||||||||||||||| Sbjct: 176 ggcgaggcagaggaaccgcg 157
>gb|AY366472.1| Human herpesvirus 5 isolate 9 nonfunctional UL141 (UL141) gene, complete sequence Length = 1278 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 607 cggccgcgacggcgacgacg 626 |||||||||||||||||||| Sbjct: 63 cggccgcgacggcgacgacg 82
>ref|XM_001004409.1| PREDICTED: Mus musculus ankyrin repeat domain 11, transcript variant 1 (Ankrd11), mRNA Length = 2161 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctttctgtctcctttatc 24 |||||||||||||||||||| Sbjct: 1579 ctctttctgtctcctttatc 1560
>ref|XM_001004413.1| PREDICTED: Mus musculus ankyrin repeat domain 11, transcript variant 2 (Ankrd11), mRNA Length = 2530 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctttctgtctcctttatc 24 |||||||||||||||||||| Sbjct: 1948 ctctttctgtctcctttatc 1929
>ref|XM_925044.2| PREDICTED: Mus musculus ankyrin repeat domain 11, transcript variant 13 (Ankrd11), mRNA Length = 3406 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctttctgtctcctttatc 24 |||||||||||||||||||| Sbjct: 2824 ctctttctgtctcctttatc 2805
>ref|XM_001004524.1| PREDICTED: Mus musculus ankyrin repeat domain 11, transcript variant 14 (Ankrd11), mRNA Length = 2455 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctttctgtctcctttatc 24 |||||||||||||||||||| Sbjct: 1873 ctctttctgtctcctttatc 1854
>ref|XM_902611.2| PREDICTED: Mus musculus ankyrin repeat domain 11, transcript variant 5 (Ankrd11), mRNA Length = 2767 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctttctgtctcctttatc 24 |||||||||||||||||||| Sbjct: 2185 ctctttctgtctcctttatc 2166
>gb|AC135594.4| Oryza sativa chromosome 3 BAC OSJNBa0024F18 genomic sequence, complete sequence Length = 159795 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 610 ccgcgacggcgacgacggcgaggc 633 |||||||| ||||||||||||||| Sbjct: 68773 ccgcgacgacgacgacggcgaggc 68750 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 610 ccgcgacggcgacgacggcgaggc 633 |||||||| ||||||||||||||| Sbjct: 52918 ccgcgacgacgacgacggcgaggc 52895
>ref|XM_838168.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1085) partial mRNA Length = 5586 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 607 cggccgcgacggcgacgacg 626 |||||||||||||||||||| Sbjct: 3171 cggccgcgacggcgacgacg 3190
>emb|AL513366.11| Human DNA sequence from clone CTD-2522E6 on chromosome X Contains the RGN gene for regucalcin (senescence marker protein-30) (RC, SMP30), the gene for neuronal protein 17.3 (P17.3), the RBM10 gene for RNA binding motif protein 10 (MGC997, MGC1132, DXS8237E, KIAA0122), an inositol 1,3,4-triphosphate 5/6 kinase (ITPK1) pseudogene, the UBE1 gene for ubiquitin-activating enzyme E1 (A1S9T and BN75 temperature sensitivity complementing) (A1S9, A1ST, GXP1, A1S9T, UBE1X, MGC4781), the 5' UTR of the PCTK1 gene for PCTAIRE protein kinase 1 and five CpG islands, complete sequence Length = 145456 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tctctctttctgtctccttt 21 |||||||||||||||||||| Sbjct: 40408 tctctctttctgtctccttt 40389
>emb|AL391241.21| Human DNA sequence from clone RP13-158L7 on chromosome X Contains a zinc finger pseudogene, heat shock 70kD protein 8 (HSPA8) pseudogene and a nucleophosmin (nucleolar phosphoprotein B23, numatrin (NPM1)) pseudogene, complete sequence Length = 157860 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ttctctctttctgtctcctt 20 |||||||||||||||||||| Sbjct: 70350 ttctctctttctgtctcctt 70369
>emb|AL162502.17| Human DNA sequence from clone RP11-153G4 on chromosome 10 Contains the 5' end of the MLR2 gene for a novel protein (likely ortholog of mouse transcription factor MLR2), a high mobility group nucleosomal binding domain 4 (HMGN4)(NHC, HMG17L3, MGC5145) pseudogene and a CpG island, complete sequence Length = 163619 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ttctctctttctgtctcctt 20 |||||||||||||||||||| Sbjct: 18143 ttctctctttctgtctcctt 18162
>gb|BT009406.1| Triticum aestivum clone wlm96.pk054.b21:fis, full insert mRNA sequence Length = 1999 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 607 cggccgcgacggcgacgacggcga 630 ||||||||||||||||| |||||| Sbjct: 507 cggccgcgacggcgacggcggcga 530
>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16 Length = 348942 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 606 acggccgcgacggcgacgac 625 |||||||||||||||||||| Sbjct: 101185 acggccgcgacggcgacgac 101204
>emb|BX248360.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 7/8 Length = 349659 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 615 acggcgacgacggcgaggcagagg 638 |||||||||||||||||| ||||| Sbjct: 177298 acggcgacgacggcgaggaagagg 177275
>gb|AY496555.1| Human herpesvirus 5 isolate 9J glycoprotein UL141 gene, complete cds Length = 1277 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 607 cggccgcgacggcgacgacg 626 |||||||||||||||||||| Sbjct: 63 cggccgcgacggcgacgacg 82
>gb|AC105185.5| Homo sapiens chromosome 8, clone RP11-1113C11, complete sequence Length = 152141 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tttctgtctcctttatcctt 27 |||||||||||||||||||| Sbjct: 75981 tttctgtctcctttatcctt 75962
>gb|AC103409.2| Homo sapiens chromosome 8, clone RP11-1107H4, complete sequence Length = 210230 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tctctttctgtctcctttat 23 |||||||||||||||||||| Sbjct: 186740 tctctttctgtctcctttat 186759
>gb|AY054120.1|AY054120 Mycobacterium smegmatis cosmid cTra12, partial sequence Length = 30277 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 607 cggccgcgacggcgacgacg 626 |||||||||||||||||||| Sbjct: 20564 cggccgcgacggcgacgacg 20583
>gb|AY052652.2| Chlamydomonas reinhardtii gamete-specific homeodomain protein (gsp1) gene, complete cds Length = 6112 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 616 cggcgacgacggcgaggcagagga 639 ||||||||||||||||| |||||| Sbjct: 5539 cggcgacgacggcgaggaagagga 5562
>gb|AF108140.2| Chlamydomonas reinhardtii gamete-specific homeodomain protein GSP1 mRNA, complete cds Length = 3470 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 616 cggcgacgacggcgaggcagagga 639 ||||||||||||||||| |||||| Sbjct: 2865 cggcgacgacggcgaggaagagga 2888
>dbj|AK032084.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330578C09 product:hypothetical Ankyrin repeat profile/Ankyrin-repeat/Ankyrin repeat region circular profile/Yeast DNA-binding domain containing protein, full insert sequence Length = 1874 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ctctttctgtctcctttatc 24 |||||||||||||||||||| Sbjct: 1326 ctctttctgtctcctttatc 1307
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 cgcgacggcgacgacggcga 630 |||||||||||||||||||| Sbjct: 27633222 cgcgacggcgacgacggcga 27633203
>gb|AC140334.3| Mus musculus BAC clone RP23-244J7 from chromosome 6, complete sequence Length = 192598 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 atcttgtcccccttgtgagcttgt 521 |||||||||||| ||||||||||| Sbjct: 114589 atcttgtcccccctgtgagcttgt 114612
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 607 cggccgcgacggcgacgacggcga 630 |||| ||||||||||||||||||| Sbjct: 1944958 cggcggcgacggcgacgacggcga 1944935
>dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0011H15 Length = 130146 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 cgcgacggcgacgacggcga 630 |||||||||||||||||||| Sbjct: 30566 cgcgacggcgacgacggcga 30547
>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0415D04 Length = 176627 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 cgcgacggcgacgacggcga 630 |||||||||||||||||||| Sbjct: 161513 cgcgacggcgacgacggcga 161532
>dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1227_D07 Length = 118358 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 cgcgacggcgacgacggcga 630 |||||||||||||||||||| Sbjct: 13603 cgcgacggcgacgacggcga 13622
>dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUP24 Length = 77999 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ttctctctttctgtctcctt 20 |||||||||||||||||||| Sbjct: 73571 ttctctctttctgtctcctt 73552
>emb|AJ310379.1|HVU310379 Hordeum vulgare mRNA for putative nuclear protein (s40 gene) Length = 417 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 609 gccgcgacggcgacgacggc 628 |||||||||||||||||||| Sbjct: 62 gccgcgacggcgacgacggc 81
>dbj|AK070282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A21, full insert sequence Length = 1506 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 ggacggccgcgacggcgacg 623 |||||||||||||||||||| Sbjct: 975 ggacggccgcgacggcgacg 994
>dbj|AK068339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148N01, full insert sequence Length = 808 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 cgacggcgacgacggcgagg 632 |||||||||||||||||||| Sbjct: 152 cgacggcgacgacggcgagg 133
>gb|AF158699.1|AF158699 Burkholderia cepacia D-serine deaminase (dsd), marR homolog, and major facilitator superfamily transporter homolog (ORFD) genes, complete cds; and unknown gene Length = 5527 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 607 cggccgcgacggcgacgacg 626 |||||||||||||||||||| Sbjct: 3946 cggccgcgacggcgacgacg 3965
>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940123D9, complete sequence Length = 121336 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 612 gcgacggcgacgacggcgag 631 |||||||||||||||||||| Sbjct: 43574 gcgacggcgacgacggcgag 43555
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 609 gccgcgacggcgacgacggcgagg 632 ||||||||||| |||||||||||| Sbjct: 2953435 gccgcgacggccacgacggcgagg 2953412
>gb|AC132287.3| Mus musculus BAC clone RP24-302M13 from 8, complete sequence Length = 195405 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ctctttctgtctcctttatc 24 |||||||||||||||||||| Sbjct: 75095 ctctttctgtctcctttatc 75114 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,208,196 Number of Sequences: 3902068 Number of extensions: 5208196 Number of successful extensions: 103294 Number of sequences better than 10.0: 115 Number of HSP's better than 10.0 without gapping: 122 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101004 Number of HSP's gapped (non-prelim): 2289 length of query: 696 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 673 effective length of database: 17,143,297,704 effective search space: 11537439354792 effective search space used: 11537439354792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)