ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags13l16 |
|---|---|
| Clone Library Name | barley_pub |
>TIM50_ARATH (Q8VYE2) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 376 Score = 185 bits (469), Expect = 2e-46 Identities = 91/145 (62%), Positives = 114/145 (78%), Gaps = 3/145 (2%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+VVYSDQ+ MYV PV E+LD G +R++L+R ATKY +GKHYRDLSKLNRDP +++++S Sbjct: 232 EIVVYSDQMEMYVLPVCEKLDPNGYIRYKLARGATKYENGKHYRDLSKLNRDPKKILFVS 291 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAA 398 +A ES LQPEN +PIKP+KLEA+DT L+DLIP LEYVA +DIRPVLASFE +DIA Sbjct: 292 ANAFESTLQPENSVPIKPYKLEADDTALVDLIPFLEYVARNSPADIRPVLASFERKDIAK 351 Query: 397 EFIERSRRLHEQKQ---QHGRIWRR 332 EFI+RS ++KQ GR WRR Sbjct: 352 EFIDRSIEYQKRKQGQLGQGRFWRR 376
>TIM50_ASPFU (Q4WI16) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 501 Score = 104 bits (260), Expect = 3e-22 Identities = 56/132 (42%), Positives = 80/132 (60%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+V+++ SM D V+ +LD +R L R AT+Y G++ +DLS LNRD ++VI I Sbjct: 264 ELVLFTSVPSMMADQVLRKLDPYRIIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILID 323 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAA 398 + LQPEN + + W + +D L+ LIP LEY+A V D+RPVL SFEG I Sbjct: 324 TKEEHARLQPENAIILDKWLGDPKDKNLVALIPFLEYIAGMGVEDVRPVLKSFEGTSIPV 383 Query: 397 EFIERSRRLHEQ 362 EF +R R + E+ Sbjct: 384 EFAKRERIMREK 395
>TIM50_CAEEL (Q22647) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 452 Score = 103 bits (258), Expect = 4e-22 Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 1/136 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 EVV+YS + M PV++ D K + ++L R TKY++G H +DLSKLNRD ++VIYI Sbjct: 290 EVVIYSSESMMTAAPVVDSFDPKQRIMYKLFRDCTKYMNGHHVKDLSKLNRDLSKVIYID 349 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASF-EGRDIA 401 A L PEN L + WK +DT L+DL LL+ + ++ D+RP+L + + D A Sbjct: 350 FDAKSGQLNPENMLRVPEWKGNMDDTSLVDLAELLKTIHLSDAEDVRPMLQYYSQYDDPA 409 Query: 400 AEFIERSRRLHEQKQQ 353 EF R+ L +Q++Q Sbjct: 410 KEFRRRAVYLSQQEEQ 425
>TIM50_CAEBR (Q61JS7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 456 Score = 102 bits (254), Expect = 1e-21 Identities = 55/136 (40%), Positives = 83/136 (61%), Gaps = 1/136 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 EVV+YS + M PV++ D K + ++L R TKY++G H +DLSKLNRD ++VIYI Sbjct: 294 EVVIYSSESMMTAAPVVDSFDQKQRIMYKLFRDCTKYMNGHHVKDLSKLNRDLSKVIYID 353 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASF-EGRDIA 401 A L PEN L + W+ +DT L+DL LL+ + ++ D+RP+L + + D A Sbjct: 354 FDAKSGQLNPENMLRVPEWRGNMDDTSLVDLAELLKTIHLSDAEDVRPMLQYYSQYDDPA 413 Query: 400 AEFIERSRRLHEQKQQ 353 EF R+ L +Q++Q Sbjct: 414 KEFRRRAVYLAQQEEQ 429
>TIM50_EMENI (Q5B4P0) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 532 Score = 100 bits (249), Expect = 5e-21 Identities = 54/132 (40%), Positives = 79/132 (59%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+V+++ SM D V+ +LD +R L R AT+Y G++ +DLS LNRD ++VI I Sbjct: 293 ELVLFTSVPSMMADQVLRKLDPYRIIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILID 352 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAA 398 + LQPEN + + W +D L+ LIP LEY+A V D+R VL SFEG+ I Sbjct: 353 TKEEHARLQPENAIILDKWNGNPKDKTLVALIPFLEYLAGMGVDDVRTVLKSFEGQSIPI 412 Query: 397 EFIERSRRLHEQ 362 EF +R + + E+ Sbjct: 413 EFAKREKAMRER 424
>TIM50_YEAST (Q02776) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 100 bits (249), Expect = 5e-21 Identities = 56/134 (41%), Positives = 83/134 (61%), Gaps = 2/134 (1%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYI 581 E+V++S MY D + E+LD V + L + Y G H +DLSKLNRD ++VI I Sbjct: 233 EIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKVIII 292 Query: 580 SGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEG-RDI 404 LQPEN +P++PW EA+D +L+ LIP LEY+A + D+RP+L SFE +++ Sbjct: 293 DTDPNSYKLQPENAIPMEPWNGEADD-KLVRLIPFLEYLATQQTKDVRPILNSFEDKKNL 351 Query: 403 AAEFIERSRRLHEQ 362 A EF R ++L ++ Sbjct: 352 AEEFDHRVKKLKDK 365
>TIM50_CANGA (Q6FRX4) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 485 Score = 97.4 bits (241), Expect = 4e-20 Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 7/154 (4%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYI 581 E+V++S MY + + E++D + + L + Y G H +DLSKLNRD +V+ I Sbjct: 239 EIVLFSSNYMMYAEKIAEKMDPIHAFISYNLFKEHCVYKDGVHIKDLSKLNRDLKKVMII 298 Query: 580 SGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEG-RDI 404 LQPEN +P+ PW +A+D +L+ LIP LEY+A +V D+RP+L S+ R++ Sbjct: 299 DTDENSYKLQPENAIPMDPWDGKADD-KLLRLIPFLEYMATQQVEDVRPILKSYHNKREL 357 Query: 403 AAEFIERSRRL-----HEQKQQHGRIWRR*LLNL 317 AEF +R ++L +QK+++ W LL L Sbjct: 358 PAEFEQRVQKLKNKFEQDQKKKNDSNWLLKLLGL 391
>TIM50_MOUSE (Q9D880) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 95.9 bits (237), Expect = 1e-19 Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 1/136 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+V+++ + M P+++ +D G + +RL R AT+Y+ G H +D+S LNRDPARV+ + Sbjct: 189 EIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMEGHHVKDISCLNRDPARVVVVD 248 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAA 398 LQP N + ++PW ++D L+DL L+ +A+ +V D+R VL + D Sbjct: 249 CKKEAFRLQPFNGVALRPWDGNSDDRVLLDLSAFLKTIALNQVEDVRTVLEHYALEDDPL 308 Query: 397 E-FIERSRRLHEQKQQ 353 E F +R RL +++QQ Sbjct: 309 EAFKQRQSRLEQEEQQ 324
>TIM50_CANAL (Q59W44) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 469 Score = 95.1 bits (235), Expect = 2e-19 Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 3/140 (2%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYI 581 E+VV+S +Y D + +LD + + L R A +Y GK +DLS LNRD + + I Sbjct: 229 EIVVFSSNSQIYSDKTVNKLDPYHAYISYALFREACRYKDGKLIKDLSLLNRDLGKTVMI 288 Query: 580 SGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGR-DI 404 + LQPEN + +K W+ + D LI LIP LEY+A V D+RP+L S++ + +I Sbjct: 289 DVDEDSAALQPENSIIVKKWEGQ-PDEYLISLIPFLEYLATQPVKDVRPILNSYKDKSNI 347 Query: 403 AAEFIERSRRLHEQ-KQQHG 347 AEF ER +L EQ ++ HG Sbjct: 348 VAEFAERENKLREQWRKDHG 367
>TIM50_PHYIN (Q5S7T7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor (NIF domain protein 3) Length = 409 Score = 94.7 bits (234), Expect = 3e-19 Identities = 53/142 (37%), Positives = 82/142 (57%), Gaps = 7/142 (4%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+V++S + ++++LD K C H LSR AT+Y++G H +DLS LNRD +V+ + Sbjct: 210 EIVIFSQNYG--AEEIVQKLDPKQCALHILSRDATRYLNGAHVKDLSNLNRDLRQVVILD 267 Query: 577 GHALESCLQPENCLPIKPWK--LEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEG--- 413 LQPEN +P+ P+ + +D +L DLIP L+ +A RV D R V+ F Sbjct: 268 DDPAAYQLQPENAIPVTPFTNGRDRDDHELKDLIPFLKALASERVPDFRQVIGEFRDEDG 327 Query: 412 --RDIAAEFIERSRRLHEQKQQ 353 RD+A ++ R +L QK+Q Sbjct: 328 VVRDLATKYGARVHQLEMQKEQ 349
>TIM50_SCHPO (O13636) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 452 Score = 94.7 bits (234), Expect = 3e-19 Identities = 48/130 (36%), Positives = 80/130 (61%), Gaps = 1/130 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGC-VRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYI 581 EVV+++ Q P+++++D + L+R ++KY GK +DLS LNRD +RVI I Sbjct: 218 EVVIFTRQYLATAKPIIDKIDPYHVSISAVLTRESSKYEKGKVIKDLSYLNRDLSRVIMI 277 Query: 580 SGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIA 401 + QP+N + + PW +D +L+ LIPLLE++A+ + D+RPVL S++G++I Sbjct: 278 DTNPESWSKQPDNAIAMAPWTGNPKDKELVGLIPLLEFIAIMDIKDVRPVLKSYQGKNIP 337 Query: 400 AEFIERSRRL 371 E+ R +L Sbjct: 338 LEYARREEKL 347
>TIM50_GIBZE (Q4I099) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 525 Score = 94.4 bits (233), Expect = 4e-19 Identities = 53/137 (38%), Positives = 81/137 (59%), Gaps = 3/137 (2%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+V+++ +PVM +LD + L R ATK+ G+ +DLS LNRD ++VI I Sbjct: 279 ELVLFTTTPYATGEPVMRKLDPFRLILWPLYREATKFEDGEIVKDLSYLNRDLSKVIIID 338 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAA 398 A QP+N + + PWK + +D L++LIP LEY+ + SD+R V+ SF+G+DI Sbjct: 339 TKAKHVRNQPDNAIILDPWKGDKDDKNLVNLIPFLEYIHTMQYSDVRKVIKSFDGKDIPT 398 Query: 397 EFIER---SRRLHEQKQ 356 EF R +R+ + KQ Sbjct: 399 EFARREAIARKEFQAKQ 415
>TIM50_PONPY (Q5RAJ8) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 94.4 bits (233), Expect = 4e-19 Identities = 49/136 (36%), Positives = 81/136 (59%), Gaps = 1/136 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+V+++ + M P+++ +D G + +RL R AT+Y+ G H +D+S LNRDPARV+ + Sbjct: 189 EIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVD 248 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFE-GRDIA 401 LQP N + ++PW ++D L+DL L+ +A+ V D+R VL + D Sbjct: 249 CKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEDDPL 308 Query: 400 AEFIERSRRLHEQKQQ 353 A F +R RL +++QQ Sbjct: 309 AAFKQRQSRLEQEEQQ 324
>TIM50_HUMAN (Q3ZCQ8) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 94.4 bits (233), Expect = 4e-19 Identities = 49/136 (36%), Positives = 81/136 (59%), Gaps = 1/136 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+V+++ + M P+++ +D G + +RL R AT+Y+ G H +D+S LNRDPARV+ + Sbjct: 189 EIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVD 248 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFE-GRDIA 401 LQP N + ++PW ++D L+DL L+ +A+ V D+R VL + D Sbjct: 249 CKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEDDPL 308 Query: 400 AEFIERSRRLHEQKQQ 353 A F +R RL +++QQ Sbjct: 309 AAFKQRQSRLEQEEQQ 324
>TIM50_DEBHA (Q6BVY9) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 471 Score = 93.6 bits (231), Expect = 6e-19 Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 2/134 (1%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYI 581 E+V++ MY + + +LD V + L R A +Y GK +DLS LNRD + + I Sbjct: 231 EIVIFGSNYQMYSENTVGKLDPFHAYVSYALFREACRYKDGKLVKDLSLLNRDLGKTVLI 290 Query: 580 SGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGR-DI 404 +QP+N +P+KPW +DT L+ LIP LEY+A V D+RP+L SF+ + +I Sbjct: 291 DVEEDSWSMQPDNAIPMKPWDGSYDDT-LVKLIPFLEYLATQPVKDVRPILNSFKDKSNI 349 Query: 403 AAEFIERSRRLHEQ 362 EF ER +L EQ Sbjct: 350 VQEFAEREAKLREQ 363
>TIM50_BOVIN (Q3SZB3) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 355 Score = 93.2 bits (230), Expect = 8e-19 Identities = 48/136 (35%), Positives = 80/136 (58%), Gaps = 1/136 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+V+++ + M P+++ +D G + +RL R AT+Y+ G H +D+S LNRDPARV+ + Sbjct: 191 EIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVD 250 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFE-GRDIA 401 LQP N + ++PW ++D L+DL L+ +A+ V D+R VL + D Sbjct: 251 CKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEEDPL 310 Query: 400 AEFIERSRRLHEQKQQ 353 F +R RL +++QQ Sbjct: 311 EAFKQRQSRLEQEEQQ 326
>TIM50_KLULA (Q6CM45) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 480 Score = 92.8 bits (229), Expect = 1e-18 Identities = 53/141 (37%), Positives = 85/141 (60%), Gaps = 2/141 (1%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYI 581 E+V++S MY + + E+LD + + L + Y G H +DLSKLNRD +V+ I Sbjct: 236 EIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHIKDLSKLNRDLGKVLII 295 Query: 580 SGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASF-EGRDI 404 LQPEN + ++PW +A+D +L+ LIP LEY+A +VSD+RP+L SF + ++I Sbjct: 296 DTDENSFKLQPENAIYLEPWDGKADD-RLLRLIPFLEYLATQQVSDVRPILKSFPDNKNI 354 Query: 403 AAEFIERSRRLHEQKQQHGRI 341 F +R + L E+ ++ R+ Sbjct: 355 PEAFEKRVQVLKEKFERDERV 375
>TIM50_CRYNE (Q5KNV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 516 Score = 92.0 bits (227), Expect = 2e-18 Identities = 49/143 (34%), Positives = 83/143 (58%), Gaps = 1/143 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYI 581 E+V++S Q P+ E++D + + +RL R +T+ V GK +D+S LNRDP++VI + Sbjct: 277 EIVLFSSQPLYTAAPIAEKIDPYQAFMPYRLFRESTRSVKGKVVKDISFLNRDPSKVIVL 336 Query: 580 SGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIA 401 + LQPEN + ++PW D L+D+IP LE + + +D+RP+L ++ G+DI Sbjct: 337 DVNPEHVALQPENGIVLQPWNGSPGDKGLVDMIPFLESIGIFNPADVRPILQAYAGKDIP 396 Query: 400 AEFIERSRRLHEQKQQHGRIWRR 332 E+ ++ E K + W R Sbjct: 397 IEYAKKEA---EAKAKAIEEWER 416
>TI50A_DROME (Q9V9P3) Import inner membrane translocase subunit TIM50-A,| mitochondrial precursor Length = 343 Score = 90.9 bits (224), Expect = 4e-18 Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 1/136 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+V+Y+ + M P+++ LD G +++RL R AT V G+H ++L LNRD +RVI + Sbjct: 181 EIVIYTSEQGMTAFPLLDALDPYGYIKYRLVRGATDLVEGQHTKNLDYLNRDLSRVIVVD 240 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASF-EGRDIA 401 + L P+N L + W +D QL DL L+ +A +V+D+R VL + + D Sbjct: 241 CDPYTTPLHPDNSLVLTKWLGNDDDVQLFDLTAFLQLIAEHQVNDVREVLRYYRQFEDPM 300 Query: 400 AEFIERSRRLHEQKQQ 353 +F + RRL EQ Q+ Sbjct: 301 EQFKDNQRRLQEQSQE 316
>TIM50_NEUCR (Q874C1) Import inner membrane translocase subunit tim-50,| mitochondrial precursor Length = 540 Score = 89.4 bits (220), Expect = 1e-17 Identities = 46/125 (36%), Positives = 71/125 (56%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+V+++ +P++ ++D + L R ATKY G+ +DLS LNRD ++VI I Sbjct: 290 EIVLFTSVPFANAEPIVRKMDPYRFIMWPLFREATKYKDGEIVKDLSYLNRDLSKVIIID 349 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAA 398 QPEN + + WK + +DT+L+ L+P LE++ D+R VL SFEG+ I Sbjct: 350 TDPKHVRAQPENAIVLPKWKGDPKDTELVSLVPFLEFIHTMNFPDVRKVLKSFEGQHIPT 409 Query: 397 EFIER 383 EF R Sbjct: 410 EFARR 414
>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 466 Score = 88.2 bits (217), Expect = 3e-17 Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYI 581 E+V++S Q + ++ +LD H L+R T Y GK +DLS +NRD ++I I Sbjct: 234 EIVLFSSQYMANCEKLIMKLDPYHAWFSHVLTREHTTYEDGKLVKDLSLMNRDMGKIIII 293 Query: 580 SGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIA 401 + QPEN +PI+PWK D +L+ LIP LE++ V+D+RP+L +F+G + Sbjct: 294 DPDTGCTMKQPENSIPIEPWKGTPGDKELVKLIPFLEWLVSQNVNDVRPILKAFDGTYLP 353 Query: 400 AEFIERSRRLHEQ 362 EF R E+ Sbjct: 354 DEFTRREAIAREK 366
>TI50C_DROME (Q9W4V8) Import inner membrane translocase subunit TIM50-C,| mitochondrial precursor Length = 428 Score = 87.8 bits (216), Expect = 3e-17 Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 1/140 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+VV++ + M V P+++ LD G + +RL R AT +V G H ++L LNRD +VI + Sbjct: 270 EIVVFTAEQGMTVFPILDALDPNGYIMYRLVRDATHFVDGHHVKNLDNLNRDLKKVIVVD 329 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASF-EGRDIA 401 A + + P+N + W +D QL+DLI L+ +A V D+R VL + + D Sbjct: 330 WDANATKMHPDNTFGLARWHGNDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPI 389 Query: 400 AEFIERSRRLHEQKQQHGRI 341 +F E R+L EQ + RI Sbjct: 390 NQFRENQRKLAEQMLEAERI 409
>TIM50_USTMA (Q4PEW9) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 493 Score = 83.6 bits (205), Expect = 6e-16 Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 1/134 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYI 581 E+V+++ Q P++E+LD + + + L R + + V GK +DL+ LNRD ++V+ + Sbjct: 262 EIVLFTTQPFFTAGPIIEKLDPDRRFITYTLFRESCRTVDGKLVKDLNHLNRDLSKVVVV 321 Query: 580 SGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIA 401 + L PEN + +KPWK E ED +LI LIP E + + + D+R + ++ G I Sbjct: 322 DTNPDSFHLHPENGILVKPWKGEREDRELIGLIPFFEAIGIYNIDDVRNTIKAYTGTHIP 381 Query: 400 AEFIERSRRLHEQK 359 E R+ + E++ Sbjct: 382 TEHARRTAAIRERE 395
>TIM50_BRARE (Q6NWD4) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 387 Score = 83.2 bits (204), Expect = 8e-16 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 19/161 (11%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+V+++ + M P+++ +D +G V +RL R AT+Y+ G H +D+S LNRD ++VI + Sbjct: 224 EIVIFTSETGMTAYPLIDSIDPQGFVMYRLFRDATRYMEGHHVKDVSCLNRDTSKVIVVD 283 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRD--- 407 LQP N L + W +ED L DL L+ +A + V D+R VL ++ + Sbjct: 284 CKREAFGLQPFNGLALCKWDGNSEDRTLYDLAAFLKTIATSGVEDVRSVLENYAHEEDPI 343 Query: 406 ---------IAAEFIERSRRLHEQKQQ-------HGRIWRR 332 +A E +R + +QK+Q GR W R Sbjct: 344 EAFKRRQAQLAREEEQRISEMAQQKKQGFSLGTIAGRFWSR 384
>TI50B_DROME (Q9W0S3) Import inner membrane translocase subunit TIM50-B,| mitochondrial precursor Length = 409 Score = 77.8 bits (190), Expect = 3e-14 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+VVY+ + + V P+++ LD GC+ +RL R +T + G H ++L LNRD RV+ + Sbjct: 251 EIVVYTAEQGVTVFPLVDALDPNGCIMYRLVRDSTHFDGGHHVKNLDNLNRDLKRVVVVD 310 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASF-EGRDIA 401 + P N I W DT L +L L + + + D+R VL + + D Sbjct: 311 WDRNSTKFHPSNSFSIPRWSGNDNDTTLFELTSFLSVLGTSEIDDVREVLQYYNQFSDSL 370 Query: 400 AEFIERSRRLHE 365 ++F E R+L E Sbjct: 371 SQFRENQRKLGE 382
>YA22_SCHPO (Q09695) Hypothetical protein C2F7.02c in chromosome I| Length = 325 Score = 77.0 bits (188), Expect = 6e-14 Identities = 43/110 (39%), Positives = 60/110 (54%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E+VV++ L+ Y DPV++ LD +RHRL R A G +DLS+L R+ I I Sbjct: 214 EIVVFTASLAKYADPVLDMLDHSHVIRHRLFREACCNYEGNFVKDLSQLGRNLEDSIIID 273 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVL 428 P + +PI W + D +LIDLIP LE+ +ARV D+ VL Sbjct: 274 NSPSSYIFHPSHAVPISSWFNDMHDMELIDLIPFLEH--LARVPDVSTVL 321
>PSR2_YEAST (Q07949) Probable phosphatase PSR2 (EC 3.1.3.-) (Plasma membrane| sodium response protein 2) Length = 397 Score = 76.3 bits (186), Expect = 1e-13 Identities = 36/110 (32%), Positives = 61/110 (55%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 EVVV++ +S Y +P+++ LD G + HRL R A G + ++LS++ R + I + Sbjct: 284 EVVVFTASVSRYANPLLDTLDPNGTIHHRLFREACYNYEGNYIKNLSQIGRPLSETIILD 343 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVL 428 P++ +PI W + D +L+D+IPLLE ++ V D+ VL Sbjct: 344 NSPASYIFHPQHAVPISSWFSDTHDNELLDIIPLLEDLSSGNVLDVGSVL 393
>CTDSL_MOUSE (P58465) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) Length = 276 Score = 74.3 bits (181), Expect = 4e-13 Identities = 38/110 (34%), Positives = 62/110 (56%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E V+++ L+ Y DPV + LD G R RL R + + G + +DLS+L R+ ++VI + Sbjct: 163 ECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVD 222 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVL 428 PEN +P++ W + DT+L+DLIP E ++R D+ +L Sbjct: 223 NSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFE--GLSREDDVYSML 270
>CTDSL_HUMAN (O15194) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protei Length = 276 Score = 74.3 bits (181), Expect = 4e-13 Identities = 38/110 (34%), Positives = 62/110 (56%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E V+++ L+ Y DPV + LD G R RL R + + G + +DLS+L R+ ++VI + Sbjct: 163 ECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVD 222 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVL 428 PEN +P++ W + DT+L+DLIP E ++R D+ +L Sbjct: 223 NSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFE--GLSREDDVYSML 270
>CTDS1_MOUSE (P58466) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (Golli-interacting protein) (GIP) Length = 261 Score = 73.6 bits (179), Expect = 6e-13 Identities = 39/110 (35%), Positives = 59/110 (53%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E V+++ L+ Y DPV + LD G R RL R + + G + +DLS+L RD RV+ + Sbjct: 147 ECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILD 206 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVL 428 P+N +P+ W DT+L DL+P E ++RV D+ VL Sbjct: 207 NSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 254
>CTDS1_HUMAN (Q9GZU7) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (NLI-IF) Length = 261 Score = 73.6 bits (179), Expect = 6e-13 Identities = 39/110 (35%), Positives = 59/110 (53%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E V+++ L+ Y DPV + LD G R RL R + + G + +DLS+L RD RV+ + Sbjct: 147 ECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILD 206 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVL 428 P+N +P+ W DT+L DL+P E ++RV D+ VL Sbjct: 207 NSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFE--QLSRVDDVYSVL 254
>TIM50_ASHGO (Q75A73) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 73.2 bits (178), Expect = 8e-13 Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYI 581 E V++ +Y V+E+LD + + + L + Y G H +DLS LNRD + + I Sbjct: 232 ENVLFPSNYMVYSKKVVEKLDPIRAFITYNLFKDHCVYKDGIHIKDLSHLNRDLGKTLII 291 Query: 580 SGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGR-DI 404 LQ EN + +PW +A+D L+ IP LEY+ ++D+RP+L SF+ R I Sbjct: 292 DTDPNSVKLQMENAILAEPWDGKADDA-LLRYIPFLEYLVTQPINDVRPILNSFKDRHHI 350 Query: 403 AAEFIERSRRL 371 EF ER +L Sbjct: 351 PEEFAERVEKL 361
>CTDSL_CHICK (Q9PTJ6) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) Length = 275 Score = 72.8 bits (177), Expect = 1e-12 Identities = 35/96 (36%), Positives = 55/96 (57%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E V+++ L+ Y DPV + LD G R RL R + + G + +DLS+L R+ ++VI + Sbjct: 162 ECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVD 221 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLE 470 PEN +P++ W + DT+L+DLIP E Sbjct: 222 NSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFE 257
>PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membrane sodium| response protein 1) Length = 427 Score = 71.2 bits (173), Expect = 3e-12 Identities = 34/110 (30%), Positives = 61/110 (55%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 EVVV++ +S Y DP+++ LD + HRL R A G + ++LS++ R + +I + Sbjct: 314 EVVVFTASVSRYGDPLLDILDTDKVIHHRLFREACYNYEGNYIKNLSQIGRPLSDIIILD 373 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVL 428 P++ +PI W + D +L+D+IPLLE +++ D+ +L Sbjct: 374 NSPASYIFHPQHAIPISSWFSDTHDNELLDIIPLLEDLSVKTSLDVGKIL 423
>CTDS2_MOUSE (Q8BX07) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) Length = 270 Score = 69.7 bits (169), Expect = 9e-12 Identities = 34/96 (35%), Positives = 54/96 (56%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E V+++ L+ Y DPV + LD G R RL R A + G + +DLS+L RD + + + Sbjct: 157 ECVLFTASLAKYADPVTDLLDRCGVFRARLFREACVFHQGCYVKDLSRLGRDLRKTVILD 216 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLE 470 PEN +P++ W + DT+L++LIP+ E Sbjct: 217 NSPASYIFHPENAVPVQSWFDDMADTELLNLIPVFE 252
>CTDS2_HUMAN (O14595) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) (Small CTD phosphatase 2) (SCP2) (Nuclear LIM interactor-interacting factor 2) (NLI-interacting factor 2) (Protein OS-4) Length = 271 Score = 68.9 bits (167), Expect = 2e-11 Identities = 34/101 (33%), Positives = 57/101 (56%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYIS 578 E V+++ L+ Y DPV + LD G R RL R + + G + +DLS+L RD + + + Sbjct: 158 ECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILD 217 Query: 577 GHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMA 455 PEN +P++ W + DT+L++LIP+ E ++ A Sbjct: 218 NSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEELSGA 258
>YHG4_YEAST (P38757) Hypothetical 50.6 kDa protein in RPL14B-GPA1 intergenic| region Length = 446 Score = 38.1 bits (87), Expect = 0.030 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 13/128 (10%) Frame = -3 Query: 757 EVVVYSDQLSMYVDPVMERLDAK--GCVRHRLSRVATKYVHGKHY-RDLSKLNRDPAR-- 593 ++++++ + Y DPV++ L++ R R G Y +DLS + Sbjct: 314 DLIIFTASMKEYADPVIDWLESSFPSSFSKRYYRSDCVLRDGVGYIKDLSIVKDSEENGK 373 Query: 592 --------VIYISGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVSDIR 437 VI I + + +N + ++ W + DT L++L+P LE AM +D+R Sbjct: 374 GSSSSLDDVIIIDNSPVSYAMNVDNAIQVEGWISDPTDTDLLNLLPFLE--AMRYSTDVR 431 Query: 436 PVLASFEG 413 +LA G Sbjct: 432 NILALKHG 439
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 30.4 bits (67), Expect = 6.2 Identities = 15/69 (21%), Positives = 31/69 (44%) Frame = -3 Query: 751 VVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGH 572 ++ D+ + +DP+ + L HR + H D+S++N D ++ GH Sbjct: 591 ILILDEPTSALDPITKNLVMDAIRAHRKGKTTLVITH-----DMSQINNDELVLVIDKGH 645 Query: 571 ALESCLQPE 545 ++ C + E Sbjct: 646 LIQRCARKE 654
>Y104_SULSO (P95957) Putative aminotransferase SSO0104 (EC 2.6.1.-) (AspB-1)| Length = 401 Score = 30.0 bits (66), Expect = 8.1 Identities = 25/84 (29%), Positives = 36/84 (42%) Frame = -3 Query: 673 RLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQL 494 R TKY+ RDL KL + VI ++G L P++ K A+D L Sbjct: 4 RFLSTETKYLRTSEIRDLLKLT-EGKNVISLAGG-----LPDPQTFPVEEIKKIADDILL 57 Query: 493 IDLIPLLEYVAMARVSDIRPVLAS 422 L+Y A A +S+ R L + Sbjct: 58 NSADKALQYTATAGISEFRRELVN 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,800,566 Number of Sequences: 219361 Number of extensions: 1883451 Number of successful extensions: 4179 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 4004 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4163 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 8015081512 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
