ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13l16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191342.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 789 Score = 165 bits (83), Expect = 3e-37 Identities = 122/135 (90%) Strand = Plus / Minus Query: 625 cccgatagtgttttccatgcacatatttagttgcaactcttgataacctgtgccggacac 684 |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| Sbjct: 781 cccgatagtgttttccattttcatatttagttgcaactcttgataacctgtgctgaacac 722 Query: 685 agccttttgcatccagtctttccataacaggatcaacatacatacttaattgatcagaat 744 |||| |||| |||||||||||| ||||||||||||||||||||||| | |||||||| | Sbjct: 721 agccctttggatccagtctttcaataacaggatcaacatacatactcagctgatcagagt 662 Query: 745 acacaacaacttcat 759 ||||||||| ||||| Sbjct: 661 acacaacaatttcat 647
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 155 bits (78), Expect = 3e-34 Identities = 138/158 (87%) Strand = Plus / Plus Query: 469 attcaagcaatggaataagatcaatcagttgagtgtcctcggcttcaagcttccaaggtt 528 ||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||| Sbjct: 32067921 attcaagaaagggaataagatcaagcagttgagtgtcatcattttcaagcttccaaggtt 32067980 Query: 529 tgatcggcaaacaattttcaggctgcaggcatgactcaagagcatgcccactgatataaa 588 ||||| | |||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 32067981 tgatctcaacacaattttcaggctgcaggcatgattccagagcatgcccactgatataaa 32068040 Query: 589 taactcgtgcagggtctctgttcagctttgacaaatcc 626 | ||| |||| || | |||||| |||||||| |||||| Sbjct: 32068041 tgacttgtgcgggatttctgtttagctttgataaatcc 32068078 Score = 137 bits (69), Expect = 6e-29 Identities = 93/101 (92%) Strand = Plus / Plus Query: 625 cccgatagtgttttccatgcacatatttagttgcaactcttgataacctgtgccggacac 684 |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| Sbjct: 32072664 cccgatagtgttttccattttcatatttagttgcaactcttgataacctgtgctgaacac 32072723 Query: 685 agccttttgcatccagtctttccataacaggatcaacatac 725 |||| |||| |||||||||||| |||||||||||||||||| Sbjct: 32072724 agccctttggatccagtctttcaataacaggatcaacatac 32072764 Score = 48.1 bits (24), Expect = 0.043 Identities = 72/88 (81%) Strand = Plus / Plus Query: 381 gaacgctcaataaattcggcagcgatgtcacggccttcaaaggatgcaaggacaggtctg 440 |||||||||||||| || |||| || |||||||||| | |||| ||||| |||| ||| Sbjct: 32067632 gaacgctcaataaactcagcaggtatatcacggccttgataggacgcaagaacagccctg 32067691 Query: 441 atgtcagaaactcttgccatagcgacat 468 || || ||| |||||||||||| |||| Sbjct: 32067692 atatccgaaggtcttgccatagcaacat 32067719 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 attacaaagacaagtcttaca 258 ||||||||||||||||||||| Sbjct: 42186220 attacaaagacaagtcttaca 42186200
>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0512C01 Length = 176261 Score = 155 bits (78), Expect = 3e-34 Identities = 138/158 (87%) Strand = Plus / Plus Query: 469 attcaagcaatggaataagatcaatcagttgagtgtcctcggcttcaagcttccaaggtt 528 ||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||| Sbjct: 109735 attcaagaaagggaataagatcaagcagttgagtgtcatcattttcaagcttccaaggtt 109794 Query: 529 tgatcggcaaacaattttcaggctgcaggcatgactcaagagcatgcccactgatataaa 588 ||||| | |||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 109795 tgatctcaacacaattttcaggctgcaggcatgattccagagcatgcccactgatataaa 109854 Query: 589 taactcgtgcagggtctctgttcagctttgacaaatcc 626 | ||| |||| || | |||||| |||||||| |||||| Sbjct: 109855 tgacttgtgcgggatttctgtttagctttgataaatcc 109892 Score = 137 bits (69), Expect = 6e-29 Identities = 93/101 (92%) Strand = Plus / Plus Query: 625 cccgatagtgttttccatgcacatatttagttgcaactcttgataacctgtgccggacac 684 |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| Sbjct: 114478 cccgatagtgttttccattttcatatttagttgcaactcttgataacctgtgctgaacac 114537 Query: 685 agccttttgcatccagtctttccataacaggatcaacatac 725 |||| |||| |||||||||||| |||||||||||||||||| Sbjct: 114538 agccctttggatccagtctttcaataacaggatcaacatac 114578 Score = 48.1 bits (24), Expect = 0.043 Identities = 72/88 (81%) Strand = Plus / Plus Query: 381 gaacgctcaataaattcggcagcgatgtcacggccttcaaaggatgcaaggacaggtctg 440 |||||||||||||| || |||| || |||||||||| | |||| ||||| |||| ||| Sbjct: 109446 gaacgctcaataaactcagcaggtatatcacggccttgataggacgcaagaacagccctg 109505 Query: 441 atgtcagaaactcttgccatagcgacat 468 || || ||| |||||||||||| |||| Sbjct: 109506 atatccgaaggtcttgccatagcaacat 109533
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460E08 Length = 170021 Score = 155 bits (78), Expect = 3e-34 Identities = 138/158 (87%) Strand = Plus / Plus Query: 469 attcaagcaatggaataagatcaatcagttgagtgtcctcggcttcaagcttccaaggtt 528 ||||||| || ||||||||||||| |||||||||||| || ||||||||||||||||| Sbjct: 164648 attcaagaaagggaataagatcaagcagttgagtgtcatcattttcaagcttccaaggtt 164707 Query: 529 tgatcggcaaacaattttcaggctgcaggcatgactcaagagcatgcccactgatataaa 588 ||||| | |||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 164708 tgatctcaacacaattttcaggctgcaggcatgattccagagcatgcccactgatataaa 164767 Query: 589 taactcgtgcagggtctctgttcagctttgacaaatcc 626 | ||| |||| || | |||||| |||||||| |||||| Sbjct: 164768 tgacttgtgcgggatttctgtttagctttgataaatcc 164805 Score = 137 bits (69), Expect = 6e-29 Identities = 93/101 (92%) Strand = Plus / Plus Query: 625 cccgatagtgttttccatgcacatatttagttgcaactcttgataacctgtgccggacac 684 |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| Sbjct: 169391 cccgatagtgttttccattttcatatttagttgcaactcttgataacctgtgctgaacac 169450 Query: 685 agccttttgcatccagtctttccataacaggatcaacatac 725 |||| |||| |||||||||||| |||||||||||||||||| Sbjct: 169451 agccctttggatccagtctttcaataacaggatcaacatac 169491 Score = 48.1 bits (24), Expect = 0.043 Identities = 72/88 (81%) Strand = Plus / Plus Query: 381 gaacgctcaataaattcggcagcgatgtcacggccttcaaaggatgcaaggacaggtctg 440 |||||||||||||| || |||| || |||||||||| | |||| ||||| |||| ||| Sbjct: 164359 gaacgctcaataaactcagcaggtatatcacggccttgataggacgcaagaacagccctg 164418 Query: 441 atgtcagaaactcttgccatagcgacat 468 || || ||| |||||||||||| |||| Sbjct: 164419 atatccgaaggtcttgccatagcaacat 164446
>gb|AY107386.1| Zea mays PCO077290 mRNA sequence Length = 509 Score = 123 bits (62), Expect = 9e-25 Identities = 125/146 (85%) Strand = Plus / Minus Query: 384 cgctcaataaattcggcagcgatgtcacggccttcaaaggatgcaaggacaggtctgatg 443 ||||||||||| |||||||| || |||| | || | |||||||||| |||| |||||| Sbjct: 164 cgctcaataaactcggcagcaatatcaccactttgataggatgcaagaacagccctgatg 105 Query: 444 tcagaaactcttgccatagcgacatattcaagcaatggaataagatcaatcagttgagtg 503 |||||| |||||||||||| |||||||| || |||||||||||||||| |||||||||| Sbjct: 104 tcagaaggtcttgccatagcaacatattctagaaatggaataagatcaagcagttgagtg 45 Query: 504 tcctcggcttcaagcttccaaggttt 529 || || |||||||||||||||||| Sbjct: 44 tcatcattttcaagcttccaaggttt 19
>ref|XM_475705.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1224 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Minus Query: 512 ttcaagcttccaaggtttgatcggcaaacaattttcaggctgcaggcatgactcaagagc 571 |||||| |||||||||||||| | | ||||||||| ||||| | ||| || |||||||| Sbjct: 909 ttcaagtttccaaggtttgatttgaacacaattttctggctgtaagcaagattcaagagc 850 Query: 572 atgcccactgatataaataactcgtgcagggtctctgttcagctttgacaaatcccgata 631 || | ||||| ||||||||| ||||||| | ||| |||| |||||||||||||||||| Sbjct: 849 gtggctgctgatgtaaataacttgtgcaggatttctattcaactttgacaaatcccgata 790 Query: 632 gtgttttccat 642 ||||| |||| Sbjct: 789 atgtttaccat 779 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 711 acaggatcaacatacatacttaattgatcagaatacacaacaacttcat 759 |||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 710 acaggatcaacatacataggcatctgatcagaatacacaacaacttcat 662
>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07, complete sequence Length = 146712 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Minus Query: 512 ttcaagcttccaaggtttgatcggcaaacaattttcaggctgcaggcatgactcaagagc 571 |||||| |||||||||||||| | | ||||||||| ||||| | ||| || |||||||| Sbjct: 113157 ttcaagtttccaaggtttgatttgaacacaattttctggctgtaagcaagattcaagagc 113098 Query: 572 atgcccactgatataaataactcgtgcagggtctctgttcagctttgacaaatcc 626 || | ||||| ||||||||| ||||||| | ||| |||| ||||||||||||| Sbjct: 113097 gtggctgctgatgtaaataacttgtgcaggatttctattcaactttgacaaatcc 113043 Score = 50.1 bits (25), Expect = 0.011 Identities = 25/25 (100%) Strand = Plus / Minus Query: 735 tgatcagaatacacaacaacttcat 759 ||||||||||||||||||||||||| Sbjct: 112183 tgatcagaatacacaacaacttcat 112159
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Minus Query: 512 ttcaagcttccaaggtttgatcggcaaacaattttcaggctgcaggcatgactcaagagc 571 |||||| |||||||||||||| | | ||||||||| ||||| | ||| || |||||||| Sbjct: 25250316 ttcaagtttccaaggtttgatttgaacacaattttctggctgtaagcaagattcaagagc 25250257 Query: 572 atgcccactgatataaataactcgtgcagggtctctgttcagctttgacaaatcc 626 || | ||||| ||||||||| ||||||| | ||| |||| ||||||||||||| Sbjct: 25250256 gtggctgctgatgtaaataacttgtgcaggatttctattcaactttgacaaatcc 25250202 Score = 50.1 bits (25), Expect = 0.011 Identities = 25/25 (100%) Strand = Plus / Minus Query: 735 tgatcagaatacacaacaacttcat 759 ||||||||||||||||||||||||| Sbjct: 25249342 tgatcagaatacacaacaacttcat 25249318
>ref|NM_104467.4| Arabidopsis thaliana TIM50 AT1G55900 (TIM50) mRNA, complete cds Length = 1534 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 603 tctctgttcagctttgacaaatcccgatagtgttttccatgcacatatttagt 655 ||||||||||||||||||| ||||| |||||| ||||||| |||||||||| Sbjct: 943 tctctgttcagctttgacagatccctatagtgctttccattttcatatttagt 891
>gb|AY122975.1| Arabidopsis thaliana unknown protein (At1g55900) mRNA, complete cds Length = 1162 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 603 tctctgttcagctttgacaaatcccgatagtgttttccatgcacatatttagt 655 ||||||||||||||||||| ||||| |||||| ||||||| |||||||||| Sbjct: 848 tctctgttcagctttgacagatccctatagtgctttccattttcatatttagt 796
>gb|AY072140.1| Arabidopsis thaliana unknown protein (At1g55900) mRNA, complete cds Length = 1496 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 603 tctctgttcagctttgacaaatcccgatagtgttttccatgcacatatttagt 655 ||||||||||||||||||| ||||| |||||| ||||||| |||||||||| Sbjct: 942 tctctgttcagctttgacagatccctatagtgctttccattttcatatttagt 890
>dbj|AK221878.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-17-J22 Length = 699 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 603 tctctgttcagctttgacaaatcccgatagtgttttccatgcacatatttagt 655 ||||||||||||||||||| ||||| |||||| ||||||| |||||||||| Sbjct: 154 tctctgttcagctttgacagatccctatagtgctttccattttcatatttagt 102
>emb|BX815907.1|CNS0ABUR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH16ZD01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1510 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 603 tctctgttcagctttgacaaatcccgatagtgttttccatgcacatatttagt 655 ||||||||||||||||||| ||||| |||||| ||||||| |||||||||| Sbjct: 919 tctctgttcagctttgacagatccctatagtgctttccattttcatatttagt 867
>ref|XM_463449.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 165 Score = 48.1 bits (24), Expect = 0.043 Identities = 72/88 (81%) Strand = Plus / Minus Query: 381 gaacgctcaataaattcggcagcgatgtcacggccttcaaaggatgcaaggacaggtctg 440 |||||||||||||| || |||| || |||||||||| | |||| ||||| |||| ||| Sbjct: 146 gaacgctcaataaactcagcaggtatatcacggccttgataggacgcaagaacagccctg 87 Query: 441 atgtcagaaactcttgccatagcgacat 468 || || ||| |||||||||||| |||| Sbjct: 86 atatccgaaggtcttgccatagcaacat 59
>dbj|AB028615.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MIL15 Length = 84157 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 71 aacaaattatcatattgtcaaca 93 ||||||||||||||||||||||| Sbjct: 26893 aacaaattatcatattgtcaaca 26871 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 71 aacaaattatcatattgtcaaca 93 ||||||||||||||||||||||| Sbjct: 26492 aacaaattatcatattgtcaaca 26470
>gb|AC145798.2| Xenopus tropicalis clone CH216-53L7, complete sequence Length = 156486 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 603 tctctgttcagctttgacaaa 623 ||||||||||||||||||||| Sbjct: 118423 tctctgttcagctttgacaaa 118403
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 ataatcatcgccgccaaatgc 345 ||||||||||||||||||||| Sbjct: 826682 ataatcatcgccgccaaatgc 826662
>gb|AC013701.6| Homo sapiens, clone RP11-22C8, complete sequence Length = 160275 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 598 cagggtctctgttcagctttgacaa 622 ||||||||||||||||| ||||||| Sbjct: 86823 cagggtctctgttcagcattgacaa 86847
>gb|AC004483.3| Arabidopsis thaliana chromosome 2 clone T12J2 map mi421, complete sequence Length = 85463 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aacaaattatcatattgtcaacaaa 95 ||||||| ||||||||||||||||| Sbjct: 61202 aacaaatgatcatattgtcaacaaa 61226
>emb|BX324224.11| Zebrafish DNA sequence from clone CH211-168H21 in linkage group 13, complete sequence Length = 147168 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 agtctggcaaaattacaaaga 247 ||||||||||||||||||||| Sbjct: 99430 agtctggcaaaattacaaaga 99410
>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1294_F06 Length = 121088 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 attacaaagacaagtcttaca 258 ||||||||||||||||||||| Sbjct: 59418 attacaaagacaagtcttaca 59398
>gb|AC002328.2|AC002328 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence Length = 109171 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aacaaattatcatattgtcaacaaa 95 ||||||| ||||||||||||||||| Sbjct: 64787 aacaaatgatcatattgtcaacaaa 64811
>dbj|AK073433.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042P17, full insert sequence Length = 1504 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 attacaaagacaagtcttaca 258 ||||||||||||||||||||| Sbjct: 1449 attacaaagacaagtcttaca 1429 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,335,965 Number of Sequences: 3902068 Number of extensions: 7335965 Number of successful extensions: 153868 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 153609 Number of HSP's gapped (non-prelim): 258 length of query: 759 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 736 effective length of database: 17,143,297,704 effective search space: 12617467110144 effective search space used: 12617467110144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
