ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13l13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009062.1| Triticum aestivum clone wds1f.pk002.a12:fis, full... 62 3e-06
2gb|AC118700.10| Mus musculus chromosome 3, clone RP23-24O21, com... 46 0.15
3gb|AC132297.4| Mus musculus chromosome 7 clone RP24-330M18, comp... 46 0.15
4gb|AC098723.3| Mus musculus BAC clone RP23-3D10 from 7, complete... 46 0.15
5gb|BC022686.1| Mus musculus ring finger protein 121, mRNA (cDNA ... 46 0.15
6dbj|AK159260.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 46 0.15
7dbj|AK159032.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 46 0.15
8dbj|AK168821.1| Mus musculus 17 days pregnant adult female amnio... 46 0.15
9ref|NM_029211.2| Mus musculus ring finger protein 121 (Rnf121), ... 46 0.15
10dbj|AK169089.1| Mus musculus 17 days pregnant adult female amnio... 46 0.15
11dbj|AK034806.1| Mus musculus 12 days embryo embryonic body betwe... 46 0.15
12dbj|AK078509.1| Mus musculus 12 days embryo female mullerian duc... 46 0.15
13ref|XM_238909.3| PREDICTED: Rattus norvegicus ring finger protei... 46 0.15
14gb|AC150275.2| Mus musculus BAC clone RP23-409M16 from 7, comple... 46 0.15
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
16dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
17gb|DQ506934.1| Hepatitis C virus isolate P11 clone L6346 polypro... 42 2.4
18gb|DQ506727.1| Hepatitis C virus isolate P11 clone F5501 polypro... 42 2.4
19ref|NM_194452.1| Homo sapiens ring finger protein 121 (RNF121), ... 42 2.4
20ref|NM_018320.3| Homo sapiens ring finger protein 121 (RNF121), ... 42 2.4
21ref|NM_194453.1| Homo sapiens ring finger protein 121 (RNF121), ... 42 2.4
22gb|AC144796.2| Mus musculus BAC clone RP24-397M4 from chromosome... 42 2.4
23gb|BC009672.2| Homo sapiens ring finger protein 121, mRNA (cDNA ... 42 2.4
24emb|CR625242.1| full-length cDNA clone CS0DE005YF15 of Placenta ... 42 2.4
25dbj|AK094508.1| Homo sapiens cDNA FLJ37189 fis, clone BRALZ2002418 42 2.4
26dbj|AK023139.1| Homo sapiens cDNA FLJ13077 fis, clone NT2RP30019... 42 2.4
27emb|CR457298.1| Homo sapiens full open reading frame cDNA clone ... 42 2.4
28ref|NM_066714.3| Caenorhabditis elegans CEll Death abnormality f... 42 2.4
29ref|NM_001026055.1| Caenorhabditis elegans CEll Death abnormalit... 42 2.4
30ref|NM_001026054.1| Caenorhabditis elegans CEll Death abnormalit... 42 2.4
31dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
32gb|AF344924.1|AF344924 Hepatitis C virus isolate RBpreSC1c5 poly... 42 2.4
33gb|AF344915.1|AF344915 Hepatitis C virus isolate RApostSC2c8 pol... 42 2.4
34gb|BC093084.1| Homo sapiens cDNA clone IMAGE:30408850 42 2.4
35gb|AC147869.3| Monodelphis domestica clone VMRC6-113K21, complet... 42 2.4
36gb|AC099599.6| Mus musculus chromosome 7, clone RP23-115D8, comp... 42 2.4
37gb|AY746914.1| Hepatitis C virus clone #27-6 polyprotein mRNA, p... 42 2.4
38gb|AY746751.1| Hepatitis C virus clone #14-1 polyprotein mRNA, p... 42 2.4
39dbj|AP002490.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.4
40dbj|AP000719.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.4
41emb|CT010468.16| Mouse DNA sequence from clone RP23-315J19 on ch... 42 2.4
42emb|AL833638.1|HSM804951 Homo sapiens mRNA; cDNA DKFZp686L1579 (... 42 2.4
43gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
44emb|AL713941.3|CNS07YP9 Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.4
45gb|AF049142.1|AF049142 Caenorhabditis elegans ATP-binding casset... 42 2.4
46gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 42 2.4
47gb|AF109719.2|MMHC188A7 Mus musculus casein kinase 2 beta subuni... 40 9.4
48gb|AC163748.6| Mus musculus BAC clone RP23-411N10 from chromosom... 40 9.4
49gb|AY283728.1| Crossostoma fascicauda haplotype Cf3 mitochondria... 40 9.4
50gb|AY283726.1| Crossostoma fascicauda haplotype Cf1 mitochondria... 40 9.4
51gb|AC126245.3| Mus musculus BAC clone RP24-354D8 from chromosome... 40 9.4
52emb|CR392350.11| Zebrafish DNA sequence from clone DKEY-61N21 in... 40 9.4
53emb|Z81527.1|CEF35E12 Caenorhabditis elegans Cosmid F35E12, comp... 40 9.4
54gb|AY357103.1| Clarias macrocephalus microsatellite Cma-54* sequ... 40 9.4
55emb|AL391098.17| Human DNA sequence from clone RP11-544G4 on chr... 40 9.4
56emb|BX897667.19| Zebrafish DNA sequence from clone CH211-278K1 i... 40 9.4
57emb|BX601648.7| Zebrafish DNA sequence from clone DKEY-14F19 in ... 40 9.4
58gb|AC103584.15| Bos taurus clone rp42-51p13, complete sequence 40 9.4
59gb|AC103769.2| Homo sapiens chromosome 8, clone RP11-110G21, com... 40 9.4
60gb|AC090186.7| Homo sapiens chromosome 8, clone RP11-11C20, comp... 40 9.4
61gb|AC008631.6| Homo sapiens chromosome 5 clone CTB-163B16, compl... 40 9.4
62emb|BX545854.10| Zebrafish DNA sequence from clone CH211-195N8 i... 40 9.4
63gb|AF532117.1| Mus musculus strain 129/SvJ BAC clone citb9k22 fr... 40 9.4
64emb|BX294659.9| Zebrafish DNA sequence from clone DKEYP-15D12 in... 40 9.4
65gb|AC112696.4| Homo sapiens BAC clone RP11-444N22 from 2, comple... 40 9.4
66gb|AC084301.12| Homo sapiens 3 BAC RP11-203F4 (Roswell Park Canc... 40 9.4
67gb|AC004898.3|AC004898 Homo sapiens PAC clone RP4-814D15 from 7q... 40 9.4
68emb|BX005048.9| Zebrafish DNA sequence from clone CH211-167M1, c... 40 9.4
69dbj|AP000842.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.4
70emb|BX942839.9| Zebrafish DNA sequence from clone CH211-93F2 in ... 40 9.4
71emb|AL669881.19| Mouse DNA sequence from clone RP23-161I3 on chr... 40 9.4
72emb|CR974444.18| Mouse DNA sequence from clone RP23-115O3 on chr... 40 9.4
73emb|AL954311.13| Zebrafish DNA sequence from clone CH211-138M12 ... 40 9.4
74gb|AC005413.1|AC005413 Mus musculus chromosome 17 BAC clone citb... 40 9.4
75gb|AC005665.1|AC005665 Mus musculus chromosome 17 BAC clone citb... 40 9.4
76emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 9.4
77gb|AC161488.7| Mus musculus chromosome 7, clone RP24-300N16, com... 40 9.4
78emb|AL772408.4| Mouse DNA sequence from clone RP23-339B20 on chr... 40 9.4
79emb|AL671925.4| Mouse DNA sequence from clone RP23-236O21 on chr... 40 9.4
80dbj|AB026192.1| Xenopus laevis mRNA for Kielin, complete cds 40 9.4 
>gb|BT009062.1| Triticum aestivum clone wds1f.pk002.a12:fis, full insert mRNA
            sequence
          Length = 1970

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 448  gcctctgaacctctgcttgcccaatccggacgcct 482
            ||||||||||||||||||||||||||||| |||||
Sbjct: 1445 gcctctgaacctctgcttgcccaatccggccgcct 1411



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 214  gggccggagcatgttgtgactgacttgtcccgtcctgcctcatcagaattcaattca 270
            ||||||||||||||   |||||||| | ||||||||| ||||||| |||||||||||
Sbjct: 1699 gggccggagcatgtcccgactgactcgccccgtcctggctcatcacaattcaattca 1643



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 584  actgcaataagaaggaagcgtttctctg 611
            ||||||||||||||||||| ||||||||
Sbjct: 1315 actgcaataagaaggaagcatttctctg 1288



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 40/46 (86%), Gaps = 4/46 (8%)
 Strand = Plus / Minus

                                                          
Query: 61   atggcaaggtgggaaaggcagcacacaagttggcctgcgcgccgta 106
            |||||||||||||| |||||     |||||||||||||||||||||
Sbjct: 1848 atggcaaggtgggataggca----ccaagttggcctgcgcgccgta 1807



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 177  agtaatggcagtccgtccgtc 197
            |||||||||||||||||||||
Sbjct: 1743 agtaatggcagtccgtccgtc 1723
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>gb|AC118700.10| Mus musculus chromosome 3, clone RP23-24O21, complete sequence
          Length = 220310

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 624    tccagagtgtcaagactgtcaat 646
              |||||||||||||||||||||||
Sbjct: 152737 tccagagtgtcaagactgtcaat 152715
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>gb|AC132297.4| Mus musculus chromosome 7 clone RP24-330M18, complete sequence
          Length = 152941

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 104   gtaccaggagcagctgggctaccacca 130
             ||||||||||||||||||| |||||||
Sbjct: 80692 gtaccaggagcagctgggccaccacca 80718
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>gb|AC098723.3| Mus musculus BAC clone RP23-3D10 from 7, complete sequence
          Length = 227968

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 104    gtaccaggagcagctgggctaccacca 130
              ||||||||||||||||||| |||||||
Sbjct: 152104 gtaccaggagcagctgggccaccacca 152078
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>gb|BC022686.1| Mus musculus ring finger protein 121, mRNA (cDNA clone MGC:31393
           IMAGE:4241984), complete cds
          Length = 1502

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 104 gtaccaggagcagctgggctaccacca 130
           ||||||||||||||||||| |||||||
Sbjct: 215 gtaccaggagcagctgggccaccacca 189
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>dbj|AK159260.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
           library, clone:I420013F22 product:ring finger protein
           121, full insert sequence
          Length = 2242

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 104 gtaccaggagcagctgggctaccacca 130
           ||||||||||||||||||| |||||||
Sbjct: 242 gtaccaggagcagctgggccaccacca 216
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>dbj|AK159032.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched
           library, clone:K530038F17 product:ring finger protein
           121, full insert sequence
          Length = 2345

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 104 gtaccaggagcagctgggctaccacca 130
           ||||||||||||||||||| |||||||
Sbjct: 352 gtaccaggagcagctgggccaccacca 326
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>dbj|AK168821.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN
           full-length enriched library, clone:I920057P05
           product:ring finger protein 121, full insert sequence
          Length = 2235

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 104 gtaccaggagcagctgggctaccacca 130
           ||||||||||||||||||| |||||||
Sbjct: 228 gtaccaggagcagctgggccaccacca 202
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>ref|NM_029211.2| Mus musculus ring finger protein 121 (Rnf121), mRNA
          Length = 1502

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 104 gtaccaggagcagctgggctaccacca 130
           ||||||||||||||||||| |||||||
Sbjct: 215 gtaccaggagcagctgggccaccacca 189
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>dbj|AK169089.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN
           full-length enriched library, clone:I920079L04
           product:ring finger protein 121, full insert sequence
          Length = 2235

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 104 gtaccaggagcagctgggctaccacca 130
           ||||||||||||||||||| |||||||
Sbjct: 228 gtaccaggagcagctgggccaccacca 202
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>dbj|AK034806.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430041H01 product:hypothetical RING finger
            containing protein, full insert sequence
          Length = 2542

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 104  gtaccaggagcagctgggctaccacca 130
            ||||||||||||||||||| |||||||
Sbjct: 1529 gtaccaggagcagctgggccaccacca 1503
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>dbj|AK078509.1| Mus musculus 12 days embryo female mullerian duct includes
           surrounding region cDNA, RIKEN full-length enriched
           library, clone:6820427D03 product:hypothetical RING
           finger containing protein, full insert sequence
          Length = 2177

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 104 gtaccaggagcagctgggctaccacca 130
           ||||||||||||||||||| |||||||
Sbjct: 176 gtaccaggagcagctgggccaccacca 150
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>ref|XM_238909.3| PREDICTED: Rattus norvegicus ring finger protein 121 (predicted)
           (Rnf121_predicted), mRNA
          Length = 2202

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 104 gtaccaggagcagctgggctaccacca 130
           ||||||||||||||||||| |||||||
Sbjct: 215 gtaccaggagcagctgggccaccacca 189
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>gb|AC150275.2| Mus musculus BAC clone RP23-409M16 from 7, complete sequence
          Length = 224935

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 104    gtaccaggagcagctgggctaccacca 130
              ||||||||||||||||||| |||||||
Sbjct: 177270 gtaccaggagcagctgggccaccacca 177296
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 563      tttctttattccatttgttaaa 584
                ||||||||||||||||||||||
Sbjct: 23927438 tttctttattccatttgttaaa 23927459
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>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0419H09
          Length = 143533

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 563   tttctttattccatttgttaaa 584
             ||||||||||||||||||||||
Sbjct: 60589 tttctttattccatttgttaaa 60610
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>gb|DQ506934.1| Hepatitis C virus isolate P11 clone L6346 polyprotein precursor,
           gene, partial cds
          Length = 528

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 110 ggagcagctgggctaccacca 130
           |||||||||||||||||||||
Sbjct: 49  ggagcagctgggctaccacca 29
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>gb|DQ506727.1| Hepatitis C virus isolate P11 clone F5501 polyprotein precursor,
           gene, partial cds
          Length = 528

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 110 ggagcagctgggctaccacca 130
           |||||||||||||||||||||
Sbjct: 49  ggagcagctgggctaccacca 29
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>ref|NM_194452.1| Homo sapiens ring finger protein 121 (RNF121), transcript variant
           2, mRNA
          Length = 2043

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 106 accaggagcagctgggctaccacca 130
           ||||||||||||||||| |||||||
Sbjct: 234 accaggagcagctgggccaccacca 210
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>ref|NM_018320.3| Homo sapiens ring finger protein 121 (RNF121), transcript variant
           1, mRNA
          Length = 2306

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 106 accaggagcagctgggctaccacca 130
           ||||||||||||||||| |||||||
Sbjct: 234 accaggagcagctgggccaccacca 210
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>ref|NM_194453.1| Homo sapiens ring finger protein 121 (RNF121), transcript variant
           3, mRNA
          Length = 2268

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 106 accaggagcagctgggctaccacca 130
           ||||||||||||||||| |||||||
Sbjct: 196 accaggagcagctgggccaccacca 172
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>gb|AC144796.2| Mus musculus BAC clone RP24-397M4 from chromosome 7, complete sequence
          Length = 140189

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 620   tgcctccagagtgtcaagact 640
             |||||||||||||||||||||
Sbjct: 81576 tgcctccagagtgtcaagact 81596
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>gb|BC009672.2| Homo sapiens ring finger protein 121, mRNA (cDNA clone
           IMAGE:3895743), partial cds
          Length = 1270

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 106 accaggagcagctgggctaccacca 130
           ||||||||||||||||| |||||||
Sbjct: 217 accaggagcagctgggccaccacca 193
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>emb|CR625242.1| full-length cDNA clone CS0DE005YF15 of Placenta of Homo sapiens
           (human)
          Length = 1152

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 106 accaggagcagctgggctaccacca 130
           ||||||||||||||||| |||||||
Sbjct: 205 accaggagcagctgggccaccacca 181
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>dbj|AK094508.1| Homo sapiens cDNA FLJ37189 fis, clone BRALZ2002418
          Length = 2368

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 106 accaggagcagctgggctaccacca 130
           ||||||||||||||||| |||||||
Sbjct: 177 accaggagcagctgggccaccacca 153
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>dbj|AK023139.1| Homo sapiens cDNA FLJ13077 fis, clone NT2RP3001944, moderately
           similar to HYPOTHETICAL 47.6 KD PROTEIN C16C10.5 IN
           CHROMOSOME III
          Length = 2268

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 106 accaggagcagctgggctaccacca 130
           ||||||||||||||||| |||||||
Sbjct: 215 accaggagcagctgggccaccacca 191
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>emb|CR457298.1| Homo sapiens full open reading frame cDNA clone RZPDo834A1113D for
           gene RNF121, ring finger protein 121; complete cds,
           incl. stopcodon
          Length = 984

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 106 accaggagcagctgggctaccacca 130
           ||||||||||||||||| |||||||
Sbjct: 209 accaggagcagctgggccaccacca 185
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>ref|NM_066714.3| Caenorhabditis elegans CEll Death abnormality family member (ced-7)
           (ced-7) mRNA, complete cds
          Length = 5070

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 268 tcaattcatatgctgctggag 288
           |||||||||||||||||||||
Sbjct: 452 tcaattcatatgctgctggag 472
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>ref|NM_001026055.1| Caenorhabditis elegans CEll Death abnormality family member (ced-7)
           (ced-7) mRNA, complete cds
          Length = 5546

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 268 tcaattcatatgctgctggag 288
           |||||||||||||||||||||
Sbjct: 594 tcaattcatatgctgctggag 614
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>ref|NM_001026054.1| Caenorhabditis elegans CEll Death abnormality family member (ced-7)
           (ced-7) mRNA, complete cds
          Length = 5370

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 268 tcaattcatatgctgctggag 288
           |||||||||||||||||||||
Sbjct: 452 tcaattcatatgctgctggag 472
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 260      aattcaattcaattcatatgc 280
                |||||||||||||||||||||
Sbjct: 17033948 aattcaattcaattcatatgc 17033928
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>gb|AF344924.1|AF344924 Hepatitis C virus isolate RBpreSC1c5 polyprotein gene, partial cds
          Length = 978

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 110 ggagcagctgggctaccacca 130
           |||||||||||||||||||||
Sbjct: 487 ggagcagctgggctaccacca 467
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>gb|AF344915.1|AF344915 Hepatitis C virus isolate RApostSC2c8 polyprotein gene, partial cds
          Length = 978

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 110 ggagcagctgggctaccacca 130
           |||||||||||||||||||||
Sbjct: 487 ggagcagctgggctaccacca 467
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>gb|BC093084.1| Homo sapiens cDNA clone IMAGE:30408850
          Length = 2215

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 106 accaggagcagctgggctaccacca 130
           ||||||||||||||||| |||||||
Sbjct: 151 accaggagcagctgggccaccacca 127
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>gb|AC147869.3| Monodelphis domestica clone VMRC6-113K21, complete sequence
          Length = 157763

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 254   catcagaattcaattcaattcatat 278
             |||||||||||||||||||| ||||
Sbjct: 68150 catcagaattcaattcaattaatat 68174
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>gb|AC099599.6| Mus musculus chromosome 7, clone RP23-115D8, complete sequence
          Length = 209810

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 620    tgcctccagagtgtcaagact 640
              |||||||||||||||||||||
Sbjct: 158877 tgcctccagagtgtcaagact 158857
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>gb|AY746914.1| Hepatitis C virus clone #27-6 polyprotein mRNA, partial cds
          Length = 1280

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 110 ggagcagctgggctaccacca 130
           |||||||||||||||||||||
Sbjct: 442 ggagcagctgggctaccacca 422
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>gb|AY746751.1| Hepatitis C virus clone #14-1 polyprotein mRNA, partial cds
          Length = 1280

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 110 ggagcagctgggctaccacca 130
           |||||||||||||||||||||
Sbjct: 442 ggagcagctgggctaccacca 422
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>dbj|AP002490.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-849H4, complete
             sequence
          Length = 191986

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 106   accaggagcagctgggctaccacca 130
             ||||||||||||||||| |||||||
Sbjct: 50081 accaggagcagctgggccaccacca 50057
to top
>dbj|AP000719.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-757C15, complete
              sequences
          Length = 196424

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 106    accaggagcagctgggctaccacca 130
              ||||||||||||||||| |||||||
Sbjct: 113424 accaggagcagctgggccaccacca 113400
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>emb|CT010468.16| Mouse DNA sequence from clone RP23-315J19 on chromosome 13, complete
              sequence
          Length = 155441

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 56     agtagatggcaaggtgggaaaggca 80
              ||||||||||| |||||||||||||
Sbjct: 121868 agtagatggcatggtgggaaaggca 121892
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>emb|AL833638.1|HSM804951 Homo sapiens mRNA; cDNA DKFZp686L1579 (from clone DKFZp686L1579)
          Length = 2134

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 106 accaggagcagctgggctaccacca 130
           ||||||||||||||||| |||||||
Sbjct: 186 accaggagcagctgggccaccacca 162
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 260      aattcaattcaattcatatgc 280
                |||||||||||||||||||||
Sbjct: 16987324 aattcaattcaattcatatgc 16987304
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>emb|AL713941.3|CNS07YP9 Oryza sativa chromosome 12, . BAC OSJNBa0006M08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 136254

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 260    aattcaattcaattcatatgc 280
              |||||||||||||||||||||
Sbjct: 114795 aattcaattcaattcatatgc 114815
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>gb|AF049142.1|AF049142 Caenorhabditis elegans ATP-binding cassette transporter (ced-7)
           mRNA, complete cds
          Length = 5587

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 268 tcaattcatatgctgctggag 288
           |||||||||||||||||||||
Sbjct: 615 tcaattcatatgctgctggag 635
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 254     catcagaattcaattcaattcatat 278
               |||||||||||||||||||| ||||
Sbjct: 1496714 catcagaattcaattcaattaatat 1496738
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>gb|AF109719.2|MMHC188A7 Mus musculus casein kinase 2 beta subunit (gMCK2) gene, partial cds;
            BAT4, NG20 (NG20), BAT3, BAT2, AIF-1, B144, lymphotoxin
            beta, TNF, and TNF beta genes, complete cds; IKBL gene,
            partial cds; and unknown gene
          Length = 120990

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 656  gtgtgtatgtctgtctgtca 675
            ||||||||||||||||||||
Sbjct: 2037 gtgtgtatgtctgtctgtca 2018
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>gb|AC163748.6| Mus musculus BAC clone RP23-411N10 from chromosome 9, complete sequence
          Length = 226254

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 438    ctgtgagcctgcctctgaacctct 461
              ||||||||||||||||||| ||||
Sbjct: 221283 ctgtgagcctgcctctgaagctct 221306
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>gb|AY283728.1| Crossostoma fascicauda haplotype Cf3 mitochondrial D-loop, complete
           sequence
          Length = 891

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 aagtaataataatgtagtaa 181
           ||||||||||||||||||||
Sbjct: 216 aagtaataataatgtagtaa 235
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>gb|AY283726.1| Crossostoma fascicauda haplotype Cf1 mitochondrial D-loop, complete
           sequence
          Length = 891

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 aagtaataataatgtagtaa 181
           ||||||||||||||||||||
Sbjct: 216 aagtaataataatgtagtaa 235
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>gb|AC126245.3| Mus musculus BAC clone RP24-354D8 from chromosome 17, complete sequence
          Length = 160440

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 656   gtgtgtatgtctgtctgtca 675
             ||||||||||||||||||||
Sbjct: 24107 gtgtgtatgtctgtctgtca 24126
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>emb|CR392350.11| Zebrafish DNA sequence from clone DKEY-61N21 in linkage group 5, complete
              sequence
          Length = 230648

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    aattcaattcaattcatatg 279
              ||||||||||||||||||||
Sbjct: 125394 aattcaattcaattcatatg 125375
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>emb|Z81527.1|CEF35E12 Caenorhabditis elegans Cosmid F35E12, complete sequence
          Length = 31170

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 490  gacaactgccattgaatttc 509
            ||||||||||||||||||||
Sbjct: 2484 gacaactgccattgaatttc 2503
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>gb|AY357103.1| Clarias macrocephalus microsatellite Cma-54* sequence
          Length = 647

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 108 caggagcagctgggctaccaccac 131
           |||||||||||||||||| |||||
Sbjct: 157 caggagcagctgggctacaaccac 134
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>emb|AL391098.17| Human DNA sequence from clone RP11-544G4 on chromosome 1, complete
             sequence
          Length = 108155

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    gatacagtacaaacatagga 56
             ||||||||||||||||||||
Sbjct: 70488 gatacagtacaaacatagga 70507
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>emb|BX897667.19| Zebrafish DNA sequence from clone CH211-278K1 in linkage group 13,
             complete sequence
          Length = 149783

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   tcagaattcaattcaattca 275
             ||||||||||||||||||||
Sbjct: 76701 tcagaattcaattcaattca 76682
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>emb|BX601648.7| Zebrafish DNA sequence from clone DKEY-14F19 in linkage group 11,
              complete sequence
          Length = 230487

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    gaagtaataataatgtagta 180
              ||||||||||||||||||||
Sbjct: 183148 gaagtaataataatgtagta 183129
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>gb|AC103584.15| Bos taurus clone rp42-51p13, complete sequence
          Length = 177017

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    tggcaaggtgggaaaggcag 81
             ||||||||||||||||||||
Sbjct: 26906 tggcaaggtgggaaaggcag 26887
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>gb|AC103769.2| Homo sapiens chromosome 8, clone RP11-110G21, complete sequence
          Length = 138097

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    ggtgggaaaggcagcacaca 87
             ||||||||||||||||||||
Sbjct: 42543 ggtgggaaaggcagcacaca 42524
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>gb|AC090186.7| Homo sapiens chromosome 8, clone RP11-11C20, complete sequence
          Length = 143753

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    ggtgggaaaggcagcacaca 87
             ||||||||||||||||||||
Sbjct: 22754 ggtgggaaaggcagcacaca 22773
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>gb|AC008631.6| Homo sapiens chromosome 5 clone CTB-163B16, complete sequence
          Length = 107857

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   tcagaattcaattcaattca 275
             ||||||||||||||||||||
Sbjct: 42913 tcagaattcaattcaattca 42894
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>emb|BX545854.10| Zebrafish DNA sequence from clone CH211-195N8 in linkage group 11,
              complete sequence
          Length = 190179

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    cagaattcaattcaattcat 276
              ||||||||||||||||||||
Sbjct: 175070 cagaattcaattcaattcat 175051
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>gb|AF532117.1| Mus musculus strain 129/SvJ BAC clone citb9k22 from the MHC region,
            complete sequence
          Length = 173288

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 656  gtgtgtatgtctgtctgtca 675
            ||||||||||||||||||||
Sbjct: 3523 gtgtgtatgtctgtctgtca 3542
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>emb|BX294659.9| Zebrafish DNA sequence from clone DKEYP-15D12 in linkage group 12,
              complete sequence
          Length = 171920

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    tcagaattcaattcaattca 275
              ||||||||||||||||||||
Sbjct: 129491 tcagaattcaattcaattca 129472
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>gb|AC112696.4| Homo sapiens BAC clone RP11-444N22 from 2, complete sequence
          Length = 29545

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   agaggagaggagagggccgg 220
             ||||||||||||||||||||
Sbjct: 27151 agaggagaggagagggccgg 27132
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>gb|AC084301.12| Homo sapiens 3 BAC RP11-203F4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172875

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    agtaataataatgtagtaat 182
              ||||||||||||||||||||
Sbjct: 114935 agtaataataatgtagtaat 114954
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>gb|AC004898.3|AC004898 Homo sapiens PAC clone RP4-814D15 from 7q35-q36, complete sequence
          Length = 109867

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   agcctgctgctgtgagcctg 448
             ||||||||||||||||||||
Sbjct: 44369 agcctgctgctgtgagcctg 44350
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>emb|BX005048.9| Zebrafish DNA sequence from clone CH211-167M1, complete sequence
          Length = 163525

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    tcagaattcaattcaattca 275
              ||||||||||||||||||||
Sbjct: 108959 tcagaattcaattcaattca 108940
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>dbj|AP000842.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-680F20riken,
             complete sequence
          Length = 179848

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   ttgaatttctactggagtag 520
             ||||||||||||||||||||
Sbjct: 63597 ttgaatttctactggagtag 63578
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>emb|BX942839.9| Zebrafish DNA sequence from clone CH211-93F2 in linkage group 20,
             complete sequence
          Length = 173570

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   cagaattcaattcaattcat 276
             ||||||||||||||||||||
Sbjct: 85768 cagaattcaattcaattcat 85749
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>emb|AL669881.19| Mouse DNA sequence from clone RP23-161I3 on chromosome 11, complete
             sequence
          Length = 143132

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 437   gctgtgagcctgcctctgaa 456
             ||||||||||||||||||||
Sbjct: 22982 gctgtgagcctgcctctgaa 23001
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>emb|CR974444.18| Mouse DNA sequence from clone RP23-115O3 on chromosome 17, complete
             sequence
          Length = 190041

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 656   gtgtgtatgtctgtctgtca 675
             ||||||||||||||||||||
Sbjct: 49881 gtgtgtatgtctgtctgtca 49862
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>emb|AL954311.13| Zebrafish DNA sequence from clone CH211-138M12 in linkage group 5,
              complete sequence
          Length = 168421

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    aattcaattcaattcatatg 279
              ||||||||||||||||||||
Sbjct: 105719 aattcaattcaattcatatg 105738
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>gb|AC005413.1|AC005413 Mus musculus chromosome 17 BAC clone citb592j14 from the MHC region,
             complete sequence
          Length = 123371

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 656   gtgtgtatgtctgtctgtca 675
             ||||||||||||||||||||
Sbjct: 10796 gtgtgtatgtctgtctgtca 10777
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>gb|AC005665.1|AC005665 Mus musculus chromosome 17 BAC clone citb76k14 from the MHC region,
             complete sequence
          Length = 124186

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 656   gtgtgtatgtctgtctgtca 675
             ||||||||||||||||||||
Sbjct: 24059 gtgtgtatgtctgtctgtca 24040
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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 655     cgtgtgtatgtctgtctgtc 674
               ||||||||||||||||||||
Sbjct: 2246392 cgtgtgtatgtctgtctgtc 2246373
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>gb|AC161488.7| Mus musculus chromosome 7, clone RP24-300N16, complete sequence
          Length = 183220

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 656   gtgtgtatgtctgtctgtca 675
             ||||||||||||||||||||
Sbjct: 75915 gtgtgtatgtctgtctgtca 75896
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>emb|AL772408.4| Mouse DNA sequence from clone RP23-339B20 on chromosome 2, complete
             sequence
          Length = 208703

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 38    atacagtacaaacataggagtaga 61
             ||||||||||||||||| ||||||
Sbjct: 64080 atacagtacaaacatagaagtaga 64057
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>emb|AL671925.4| Mouse DNA sequence from clone RP23-236O21 on chromosome 4, complete
              sequence
          Length = 218429

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 563    tttctttattccatttgtta 582
              ||||||||||||||||||||
Sbjct: 195617 tttctttattccatttgtta 195636
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>dbj|AB026192.1| Xenopus laevis mRNA for Kielin, complete cds
          Length = 8137

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 627  agagtgtcaagactgtcaat 646
            ||||||||||||||||||||
Sbjct: 4532 agagtgtcaagactgtcaat 4551


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,304,710
Number of Sequences: 3902068
Number of extensions: 6304710
Number of successful extensions: 245492
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 245049
Number of HSP's gapped (non-prelim): 443
length of query: 687
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 664
effective length of database: 17,143,297,704
effective search space: 11383149675456
effective search space used: 11383149675456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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