Clone Information

BLAST Search Result

Clone Name	rbags13l08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY661558.1\| Hordeum vulgare subsp. vulgare eIF4E gene locus, ...	186	6e-44
2	gb\|AE017321.1\| Wolbachia endosymbiont strain TRS of Brugia malay...	44	0.57
3	gb\|AC166056.2\| Mus musculus BAC clone RP23-462A15 from chromosom...	42	2.3
4	gb\|AC130483.6\| Mus musculus chromosome 15, clone RP24-137D10, co...	42	2.3
5	ref\|XM_452104.1\| Kluyveromyces lactis NRRL Y-1140, KLLA0B12870g ...	42	2.3
6	gb\|AY600302.1\| Homo sapiens origin recognition complex, subunit ...	42	2.3
7	emb\|CR382122.1\| Kluyveromyces lactis strain NRRL Y-1140 chromoso...	42	2.3
8	gb\|AY741565.1\| Uncultured sulfate-reducing bacterium clone PIMO2...	42	2.3
9	gb\|AC154324.2\| Mus musculus BAC clone RP24-494E12 from chromosom...	42	2.3
10	gb\|AC019226.5\| Homo sapiens BAC clone RP11-567F11 from 2, comple...	42	2.3
11	gb\|AC008064.2\| Homo sapiens BAC clone RP11-178E24 from 2, comple...	42	2.3
12	gb\|AC155842.4\| Mus musculus 6 BAC RP24-122N23 (Roswell Park Canc...	42	2.3
13	gb\|AC102757.6\| Mus musculus chromosome 5, clone RP24-196M24, com...	40	8.9
14	gb\|AF077539.1\| Caenorhabditis elegans cosmid T25D3, complete seq...	40	8.9
15	ref\|XM_420625.1\| PREDICTED: Gallus gallus similar to KIAA1109 pr...	40	8.9
16	gb\|AC139107.3\| Mus musculus BAC clone RP23-430L2 from chromosome...	40	8.9
17	gb\|AC148775.2\| Medicago truncatula chromosome 2 BAC clone mth2-6...	40	8.9
18	ref\|XM_986082.1\| PREDICTED: Mus musculus similar to CG15133-PA (...	40	8.9
19	ref\|XM_975194.1\| PREDICTED: Mus musculus RIKEN cDNA 4932438A13 g...	40	8.9
20	ref\|XM_979037.1\| PREDICTED: Mus musculus RIKEN cDNA 4932438A13 g...	40	8.9
21	ref\|XM_911051.2\| PREDICTED: Mus musculus similar to CG15133-PA, ...	40	8.9
22	ref\|XM_540963.2\| PREDICTED: Canis familiaris similar to CG15133-...	40	8.9
23	gb\|AC109153.13\| Mus musculus chromosome 15, clone RP23-51J23, co...	40	8.9
24	gb\|AC009325.8\|ATAC009325 Arabidopsis thaliana chromosome III BAC...	40	8.9
25	gb\|AC122800.3\| Mus musculus BAC clone RP23-451G9 from chromosome...	40	8.9
26	ref\|XM_547351.2\| PREDICTED: Canis familiaris similar to Protein ...	40	8.9
27	ref\|XM_843384.1\| PREDICTED: Canis familiaris similar to Protein ...	40	8.9
28	ref\|XM_724048.1\| Plasmodium yoelii yoelii str. 17XNL hypothetica...	40	8.9
29	gb\|AE004198.1\| Vibrio cholerae O1 biovar eltor str. N16961 chrom...	40	8.9
30	emb\|AL451139.40\| Human DNA sequence from clone RP11-569G9 on chr...	40	8.9
31	emb\|AL136358.13\| Human DNA sequence from clone RP11-183L8 on chr...	40	8.9
32	emb\|AL121931.10\|HS1131C10 Human DNA sequence from clone RP5-1131...	40	8.9
33	gb\|CP000083.1\| Colwellia psychrerythraea 34H, complete genome	40	8.9
34	gb\|AC124231.17\| Mus musculus chromosome 18, clone RP23-17N19, co...	40	8.9
35	dbj\|AK220265.1\| Mus musculus mRNA for mKIAA1371 protein	40	8.9
36	gb\|AC090675.10\| Homo sapiens 12 BAC RP11-681A17 (Roswell Park Ca...	40	8.9
37	gb\|AC009222.4\| Homo sapiens chromosome 17, clone RP11-429O1, com...	40	8.9
38	dbj\|AK148181.1\| Mus musculus B16 F10Y cells cDNA, RIKEN full-len...	40	8.9
39	gb\|AC024918.5\| Homo sapiens chromosome 17, clone RP11-254J21, co...	40	8.9
40	gb\|AC121569.4\| Mus musculus BAC clone RP23-228C13 from chromosom...	40	8.9
41	dbj\|AK028716.1\| Mus musculus 10 days neonate skin cDNA, RIKEN fu...	40	8.9
42	dbj\|AK030086.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	8.9
43	gb\|BC034738.1\| Mus musculus RIKEN cDNA 4932438A13 gene, mRNA (cD...	40	8.9
44	gb\|AC157626.4\| Felis catus clone RP86-558I1, complete sequence	40	8.9
45	gb\|AC154633.2\| Mus musculus BAC clone RP23-296I10 from chromosom...	40	8.9
46	gb\|AC158152.4\| Mus musculus chromosome 5, clone RP23-102E11, com...	40	8.9
47	gb\|AC012306.11\| Homo sapiens BAC clone RP11-395A13 from 2, compl...	40	8.9
48	ref\|XM_342231.2\| PREDICTED: Rattus norvegicus similar to RIKEN c...	40	8.9
49	emb\|AL929021.13\| Mouse DNA sequence from clone RP23-89H14 on chr...	40	8.9
50	dbj\|BA000016.3\| Clostridium perfringens str. 13 DNA, complete ge...	40	8.9
51	emb\|AL135747.4\|CNS01DVE Human chromosome 14 DNA sequence BAC R-1...	40	8.9
52	emb\|AL157789.6\|CNS01RG6 Human chromosome 14 DNA sequence BAC R-8...	40	8.9
53	emb\|AL162832.6\|CNS01RI3 Human chromosome 14 DNA sequence BAC R-5...	40	8.9
54	gb\|AC124991.14\| Mus musculus chromosome 12, clone RP23-138M19, c...	40	8.9
55	dbj\|AP001791.4\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	8.9
56	gb\|U63829.1\|CFU63829 Canis familiaris vascular anastomotic upreg...	40	8.9
57	emb\|AL645806.9\| Mouse DNA sequence from clone CT7-316H20 on chro...	40	8.9
58	gb\|AC167022.4\| Mus musculus BAC clone RP23-183A4 from chromosome...	40	8.9
59	emb\|AL772159.12\| Mouse DNA sequence from clone RP23-107H15 on ch...	40	8.9
60	gb\|AC160528.9\| Mus musculus chromosome 15, clone RP23-310L8, com...	40	8.9
61	emb\|AL645759.11\| Mouse DNA sequence from clone RP23-441I10 on ch...	40	8.9

>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score =  186 bits (94), Expect = 6e-44
 Identities = 196/230 (85%), Gaps = 2/230 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1     cataatacatctcccag-tttacataacacaataactcatctgatgaatacatttccttt 59
             |||||||||||||| || ||||||||||||||||| |||||| || ||||||||||||| 
Sbjct: 43907 cataatacatctccgaggtttacataacacaataaatcatctcataaatacatttcctta 43848

                                                                         
Query: 60    c-taggaatatagcaaaaatggatagaattgcacaatagacaaatgacacatgtgctaac 118
             | |||||||||||||| || ||| ||||||||| |||| |  |||||||||| | |||||
Sbjct: 43847 cataggaatatagcaagaacggacagaattgcaaaataaaacaatgacacatctactaac 43788

                                                                         
Query: 119   aatggagttcatttcactatcccatgagacataggttcnnnnnnnnttatgtcgtgttga 178
             ||||||||||||| |||| ||| |||||||||||||||        |||||| |||||||
Sbjct: 43787 aatggagttcattccactctcctatgagacataggttcagaaatttttatgttgtgttga 43728

                                                               
Query: 179   tttagaagtcccaagtaggcatcatcgacatcttctcaccactttcctag 228
             |||  | ||||| |||||||||||||||||| |||||| |||||||||||
Sbjct: 43727 tttgaatgtccccagtaggcatcatcgacattttctcatcactttcctag 43678



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 52/59 (88%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                         
Query: 1      cataatacatctccca-gtttacataacacaataactcatctgatgaatacatttcctt 58
              ||||||||| |||||| ||||||||||||||||||  |||||  | |||||||||||||
Sbjct: 382291 cataatacacctcccaagtttacataacacaataagacatctcctaaatacatttcctt 382233



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 52/59 (88%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                         
Query: 1      cataatacatctccca-gtttacataacacaataactcatctgatgaatacatttcctt 58
              ||||||||| |||||| ||||||||||||||||||  |||||  | |||||||||||||
Sbjct: 268060 cataatacacctcccaagtttacataacacaataagacatctcctaaatacatttcctt 268002

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>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome
          Length = 1080084

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 27     cacaataactcatctgatgaat 48
              ||||||||||||||||||||||
Sbjct: 305152 cacaataactcatctgatgaat 305131

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>gb|AC166056.2| Mus musculus BAC clone RP23-462A15 from chromosome 13, complete
             sequence
          Length = 198814

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 247   tatatccattatactagatgt 267
             |||||||||||||||||||||
Sbjct: 99196 tatatccattatactagatgt 99216

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>gb|AC130483.6| Mus musculus chromosome 15, clone RP24-137D10, complete sequence
          Length = 137626

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 378   aaacagtctaaaaccaactccacca 402
             ||||||||||||||||||| |||||
Sbjct: 84191 aaacagtctaaaaccaactgcacca 84167

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>ref|XM_452104.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B12870g predicted mRNA
          Length = 618

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 214 tcaccactttcctagtaactt 234
           |||||||||||||||||||||
Sbjct: 604 tcaccactttcctagtaactt 584

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>gb|AY600302.1| Homo sapiens origin recognition complex, subunit 4-like (yeast)
            (ORC4L) gene, complete cds
          Length = 90562

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 342  tgccactaccataaataaaac 362
            |||||||||||||||||||||
Sbjct: 8887 tgccactaccataaataaaac 8907

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>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1320834

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 214     tcaccactttcctagtaactt 234
               |||||||||||||||||||||
Sbjct: 1123595 tcaccactttcctagtaactt 1123615

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>gb|AY741565.1| Uncultured sulfate-reducing bacterium clone PIMO2B08 dissimilatory
            sulfite reductase alpha subunit (dsrA) and dissimilatory
            sulfite reductase beta subunit (dsrB) genes, partial cds
          Length = 1888

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 534  atatcacgtgcaaaaccacct 554
            |||||||||||||||||||||
Sbjct: 1058 atatcacgtgcaaaaccacct 1038

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>gb|AC154324.2| Mus musculus BAC clone RP24-494E12 from chromosome 14, complete
             sequence
          Length = 198197

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 360   aacaaacacttcaacagaaaa 380
             |||||||||||||||||||||
Sbjct: 95394 aacaaacacttcaacagaaaa 95374

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>gb|AC019226.5| Homo sapiens BAC clone RP11-567F11 from 2, complete sequence
          Length = 132444

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 342   tgccactaccataaataaaac 362
             |||||||||||||||||||||
Sbjct: 73502 tgccactaccataaataaaac 73522

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>gb|AC008064.2| Homo sapiens BAC clone RP11-178E24 from 2, complete sequence
          Length = 172579

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 324   gctgcagtactaaaacaatgc 344
             |||||||||||||||||||||
Sbjct: 16284 gctgcagtactaaaacaatgc 16304

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>gb|AC155842.4| Mus musculus 6 BAC RP24-122N23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 177409

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 352    ataaataaaacaaacacttca 372
              |||||||||||||||||||||
Sbjct: 115281 ataaataaaacaaacacttca 115261

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>gb|AC102757.6| Mus musculus chromosome 5, clone RP24-196M24, complete sequence
          Length = 179876

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     aatacatttcctttctagga 65
              ||||||||||||||||||||
Sbjct: 115777 aatacatttcctttctagga 115758

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>gb|AF077539.1| Caenorhabditis elegans cosmid T25D3, complete sequence
          Length = 16938

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   aaaaagcttccaaaaaatgt 429
             ||||||||||||||||||||
Sbjct: 14134 aaaaagcttccaaaaaatgt 14115

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>ref|XM_420625.1| PREDICTED: Gallus gallus similar to KIAA1109 protein (LOC422670),
            mRNA
          Length = 16209

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgtcagaaatggaagaaaca 446
            ||||||||||||||||||||
Sbjct: 3122 tgtcagaaatggaagaaaca 3141

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>gb|AC139107.3| Mus musculus BAC clone RP23-430L2 from chromosome 8, complete sequence
          Length = 192627

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    aatatagcaaaaatggatag 84
             ||||||||||||||||||||
Sbjct: 55823 aatatagcaaaaatggatag 55842

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>gb|AC148775.2| Medicago truncatula chromosome 2 BAC clone mth2-62i21, complete
             sequence
          Length = 115046

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    aggaatatagcaaaaatgga 81
             ||||||||||||||||||||
Sbjct: 56534 aggaatatagcaaaaatgga 56553

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>ref|XM_986082.1| PREDICTED: Mus musculus similar to CG15133-PA (LOC671298), mRNA
          Length = 3999

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgtcagaaatggaagaaaca 446
            ||||||||||||||||||||
Sbjct: 2402 tgtcagaaatggaagaaaca 2421

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>ref|XM_975194.1| PREDICTED: Mus musculus RIKEN cDNA 4932438A13 gene (4932438A13Rik),
            mRNA
          Length = 15732

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgtcagaaatggaagaaaca 446
            ||||||||||||||||||||
Sbjct: 2402 tgtcagaaatggaagaaaca 2421

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>ref|XM_979037.1| PREDICTED: Mus musculus RIKEN cDNA 4932438A13 gene (4932438A13Rik),
            mRNA
          Length = 3999

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgtcagaaatggaagaaaca 446
            ||||||||||||||||||||
Sbjct: 2402 tgtcagaaatggaagaaaca 2421

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>ref|XM_911051.2| PREDICTED: Mus musculus similar to CG15133-PA, transcript variant 8
            (LOC676099), mRNA
          Length = 3999

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgtcagaaatggaagaaaca 446
            ||||||||||||||||||||
Sbjct: 2402 tgtcagaaatggaagaaaca 2421

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>ref|XM_540963.2| PREDICTED: Canis familiaris similar to CG15133-PA (LOC483843), mRNA
          Length = 15332

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgtcagaaatggaagaaaca 446
            ||||||||||||||||||||
Sbjct: 1856 tgtcagaaatggaagaaaca 1875

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>gb|AC109153.13| Mus musculus chromosome 15, clone RP23-51J23, complete sequence
          Length = 222164

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 567  caggaggatttcatagttcgaggt 590
            |||||||||||| |||||||||||
Sbjct: 3986 caggaggatttcttagttcgaggt 4009

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>gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence,
             complete sequence
          Length = 105543

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   aaatggaagaaacattagtc 452
             ||||||||||||||||||||
Sbjct: 66160 aaatggaagaaacattagtc 66141

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>gb|AC122800.3| Mus musculus BAC clone RP23-451G9 from chromosome 8, complete sequence
          Length = 179384

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ctgatgaatacatttccttt 59
             ||||||||||||||||||||
Sbjct: 56761 ctgatgaatacatttccttt 56780

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>ref|XM_547351.2| PREDICTED: Canis familiaris similar to Protein phosphatase 1
            regulatory subunit 12B (Myosin phosphatase targeting
            subunit 2) (Myosin phosphatase target subunit 2),
            transcript variant 1 (LOC490230), mRNA
          Length = 2952

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 423  aaaatgtcagaaatggaaga 442
            ||||||||||||||||||||
Sbjct: 2836 aaaatgtcagaaatggaaga 2855

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>ref|XM_843384.1| PREDICTED: Canis familiaris similar to Protein phosphatase 1
            regulatory subunit 12B (Myosin phosphatase targeting
            subunit 2) (Myosin phosphatase target subunit 2),
            transcript variant 2 (LOC490230), mRNA
          Length = 3000

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 423  aaaatgtcagaaatggaaga 442
            ||||||||||||||||||||
Sbjct: 2836 aaaatgtcagaaatggaaga 2855

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>ref|XM_724048.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01389)
            partial mRNA
          Length = 1452

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 408  ataaaaagcttccaaaaaat 427
            ||||||||||||||||||||
Sbjct: 1265 ataaaaagcttccaaaaaat 1284

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>gb|AE004198.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 106
            of 251 of the complete chromosome
          Length = 12918

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  catggcatccacatcagcca 533
            ||||||||||||||||||||
Sbjct: 2559 catggcatccacatcagcca 2578

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>emb|AL451139.40| Human DNA sequence from clone RP11-569G9 on chromosome 1 Contains the 3'
              end of a novel gene (DKFZP434L0117), the SH3BGRL3 gene for
              SH3 domain binding glutamic acid-rich protein like 3, the
              gene for socius (SOC), the CDW52 gene for CDW52 antigen
              (CAMPATH-1 antigen), the AIM1L gene for absent in melanoma
              1-like and a novel gene,, complete sequence
          Length = 145736

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 425    aatgtcagaaatggaagaaacatt 448
              |||||||||| |||||||||||||
Sbjct: 140714 aatgtcagaactggaagaaacatt 140737

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>emb|AL136358.13| Human DNA sequence from clone RP11-183L8 on chromosome 13 Contains the
             5' end of the LHFP gene for lipoma HMGIC fusion partner
             and a CpG island, complete sequence
          Length = 120507

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    agcaaaaatggatagaattg 89
             ||||||||||||||||||||
Sbjct: 98349 agcaaaaatggatagaattg 98330

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>emb|AL121931.10|HS1131C10 Human DNA sequence from clone RP5-1131C10 on chromosome 6q12-13, complete
              sequence
          Length = 133751

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 413    aagcttccaaaaaatgtcag 432
              ||||||||||||||||||||
Sbjct: 109910 aagcttccaaaaaatgtcag 109929

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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 432     gaaatggaagaaacattagt 451
               ||||||||||||||||||||
Sbjct: 5029170 gaaatggaagaaacattagt 5029189

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>gb|AC124231.17| Mus musculus chromosome 18, clone RP23-17N19, complete sequence
          Length = 219005

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   taccataaataaaacaaaca 367
             ||||||||||||||||||||
Sbjct: 32807 taccataaataaaacaaaca 32788

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>dbj|AK220265.1| Mus musculus mRNA for mKIAA1371 protein
          Length = 4658

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgtcagaaatggaagaaaca 446
            ||||||||||||||||||||
Sbjct: 2455 tgtcagaaatggaagaaaca 2474

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>gb|AC090675.10| Homo sapiens 12 BAC RP11-681A17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 174044

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    aaaacagtctaaaaccaact 396
              ||||||||||||||||||||
Sbjct: 156505 aaaacagtctaaaaccaact 156524

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>gb|AC009222.4| Homo sapiens chromosome 17, clone RP11-429O1, complete sequence
          Length = 184304

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   agataaaaagcttccaaaaa 425
             ||||||||||||||||||||
Sbjct: 84806 agataaaaagcttccaaaaa 84825

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>dbj|AK148181.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library,
            clone:G370042E08 product:hypothetical protein, full
            insert sequence
          Length = 3379

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgtcagaaatggaagaaaca 446
            ||||||||||||||||||||
Sbjct: 1921 tgtcagaaatggaagaaaca 1940

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>gb|AC024918.5| Homo sapiens chromosome 17, clone RP11-254J21, complete sequence
          Length = 172784

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 406    agataaaaagcttccaaaaa 425
              ||||||||||||||||||||
Sbjct: 161769 agataaaaagcttccaaaaa 161788

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>gb|AC121569.4| Mus musculus BAC clone RP23-228C13 from chromosome 12, complete sequence
          Length = 171710

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 555    atgggtgaaaaacaggagga 574
              ||||||||||||||||||||
Sbjct: 100224 atgggtgaaaaacaggagga 100243

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>dbj|AK028716.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732443H21 product:hypothetical protein,
            full insert sequence
          Length = 3039

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgtcagaaatggaagaaaca 446
            ||||||||||||||||||||
Sbjct: 2087 tgtcagaaatggaagaaaca 2106

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>dbj|AK030086.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4932438A13 product:hypothetical protein,
            full insert sequence
          Length = 3961

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgtcagaaatggaagaaaca 446
            ||||||||||||||||||||
Sbjct: 2397 tgtcagaaatggaagaaaca 2416

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>gb|BC034738.1| Mus musculus RIKEN cDNA 4932438A13 gene, mRNA (cDNA clone
            IMAGE:4935171), containing frame-shift errors
          Length = 3484

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgtcagaaatggaagaaaca 446
            ||||||||||||||||||||
Sbjct: 1260 tgtcagaaatggaagaaaca 1279

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>gb|AC157626.4| Felis catus clone RP86-558I1, complete sequence
          Length = 31633

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    agcaaaaatggatagaattg 89
             ||||||||||||||||||||
Sbjct: 23134 agcaaaaatggatagaattg 23153

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>gb|AC154633.2| Mus musculus BAC clone RP23-296I10 from chromosome 12, complete
             sequence
          Length = 216169

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    tgaatacatttcctttctag 63
             ||||||||||||||||||||
Sbjct: 12399 tgaatacatttcctttctag 12380

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>gb|AC158152.4| Mus musculus chromosome 5, clone RP23-102E11, complete sequence
          Length = 220102

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     aatacatttcctttctagga 65
              ||||||||||||||||||||
Sbjct: 164727 aatacatttcctttctagga 164746

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>gb|AC012306.11| Homo sapiens BAC clone RP11-395A13 from 2, complete sequence
          Length = 153617

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    agcaaaaatggatagaattg 89
             ||||||||||||||||||||
Sbjct: 78666 agcaaaaatggatagaattg 78685

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>ref|XM_342231.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4932438A13
            (predicted) (LOC361931), mRNA
          Length = 3033

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  tgtcagaaatggaagaaaca 446
            ||||||||||||||||||||
Sbjct: 2399 tgtcagaaatggaagaaaca 2418

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>emb|AL929021.13| Mouse DNA sequence from clone RP23-89H14 on chromosome 2, complete
             sequence
          Length = 181549

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 562   aaaaacaggaggatttcatagttcgagg 589
             |||||||||||||||||  |||||||||
Sbjct: 55416 aaaaacaggaggatttctgagttcgagg 55389

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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 431     agaaatggaagaaacattag 450
               ||||||||||||||||||||
Sbjct: 2237448 agaaatggaagaaacattag 2237429

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>emb|AL135747.4|CNS01DVE Human chromosome 14 DNA sequence BAC R-1023I22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173275

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 409    taaaaagcttccaaaaaatgtcag 432
              ||||||||||||| ||||||||||
Sbjct: 167948 taaaaagcttccagaaaatgtcag 167925

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>emb|AL157789.6|CNS01RG6 Human chromosome 14 DNA sequence BAC R-880O3 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 225603

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 409    taaaaagcttccaaaaaatgtcag 432
              ||||||||||||| ||||||||||
Sbjct: 206565 taaaaagcttccagaaaatgtcag 206588

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>emb|AL162832.6|CNS01RI3 Human chromosome 14 DNA sequence BAC R-544I20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158424

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 421   aaaaaatgtcagaaatggaagaaa 444
             ||||||||||| ||||||||||||
Sbjct: 86847 aaaaaatgtcaaaaatggaagaaa 86870

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>gb|AC124991.14| Mus musculus chromosome 12, clone RP23-138M19, complete sequence
          Length = 179111

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   atgggtgaaaaacaggagga 574
             ||||||||||||||||||||
Sbjct: 97905 atgggtgaaaaacaggagga 97924

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>dbj|AP001791.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-427G12, complete
             sequence
          Length = 140000

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 560   tgaaaaacaggaggatttca 579
             ||||||||||||||||||||
Sbjct: 90395 tgaaaaacaggaggatttca 90414

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>gb|U63829.1|CFU63829 Canis familiaris vascular anastomotic upregulated protein mRNA,
           partial cds
          Length = 402

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 tctaaaaccaactccaccat 403
           ||||||||||||||||||||
Sbjct: 174 tctaaaaccaactccaccat 193

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>emb|AL645806.9| Mouse DNA sequence from clone CT7-316H20 on chromosome 3, complete
              sequence
          Length = 129775

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    tgtcagaaatggaagaaaca 446
              ||||||||||||||||||||
Sbjct: 126595 tgtcagaaatggaagaaaca 126614

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>gb|AC167022.4| Mus musculus BAC clone RP23-183A4 from chromosome 8, complete sequence
          Length = 224462

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     aatatagcaaaaatggatag 84
              ||||||||||||||||||||
Sbjct: 223878 aatatagcaaaaatggatag 223897

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>emb|AL772159.12| Mouse DNA sequence from clone RP23-107H15 on chromosome 2, complete
             sequence
          Length = 188816

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   aaataaaacaaacacttcaa 373
             ||||||||||||||||||||
Sbjct: 31377 aaataaaacaaacacttcaa 31396

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>gb|AC160528.9| Mus musculus chromosome 15, clone RP23-310L8, complete sequence
          Length = 174502

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 567   caggaggatttcatagttcgaggt 590
             |||||||||||| |||||||||||
Sbjct: 78508 caggaggatttcttagttcgaggt 78485

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>emb|AL645759.11| Mouse DNA sequence from clone RP23-441I10 on chromosome 3, complete
             sequence
          Length = 118244

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   tgtcagaaatggaagaaaca 446
             ||||||||||||||||||||
Sbjct: 49509 tgtcagaaatggaagaaaca 49528


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,207,691
Number of Sequences: 3902068
Number of extensions: 7207691
Number of successful extensions: 160742
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 160530
Number of HSP's gapped (non-prelim): 210
length of query: 655
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 632
effective length of database: 17,143,297,704
effective search space: 10834564148928
effective search space used: 10834564148928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result