Clone Information

BLAST Search Result

Clone Name	rbags14a06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL3_ORYSA (P35684) 60S ribosomal protein L3	313	3e-85
2	RL3B_ARATH (P22738) 60S ribosomal protein L3	293	2e-79
3	RL3A_ARATH (P17094) 60S ribosomal protein L3	288	1e-77
4	RL3_DROME (O16797) 60S ribosomal protein L3	231	2e-60
5	RL3_TOXCA (P49149) 60S ribosomal protein L3	224	2e-58
6	RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)	221	1e-57
7	RL3_ASHGO (Q759R7) 60S ribosomal protein L3	221	1e-57
8	RL3_RAT (P21531) 60S ribosomal protein L3 (L4)	219	4e-57
9	RL3_BOVIN (P39872) 60S ribosomal protein L3	219	4e-57
10	RL3_CAEEL (P50880) 60S ribosomal protein L3	219	4e-57
11	RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-bindi...	219	6e-57
12	RL3_DICDI (P34113) 60S ribosomal protein L3	217	3e-56
13	RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3	216	4e-56
14	RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like	215	8e-56
15	RL3_KLULA (Q6CJR7) 60S ribosomal protein L3	214	2e-55
16	RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3	214	2e-55
17	RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Mainten...	213	3e-55
18	RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3	212	9e-55
19	RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like	212	9e-55
20	RL3B_SCHPO (P36584) 60S ribosomal protein L3-B	211	1e-54
21	RL3A_SCHPO (P40372) 60S ribosomal protein L3-A	211	1e-54
22	RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)	211	2e-54
23	RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3	208	1e-53
24	RL3_NEUCR (P59671) 60S ribosomal protein L3	204	2e-52
25	RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3	197	2e-50
26	RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)	127	4e-29
27	RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P	122	1e-27
28	RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P	119	8e-27
29	RL3_PYRHO (O59418) 50S ribosomal protein L3P	119	1e-26
30	RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P	110	5e-24
31	RL3_METAC (Q8TRU7) 50S ribosomal protein L3P	101	2e-21
32	RL3_METKA (Q8TY90) 50S ribosomal protein L3P	99	1e-20
33	RL3_ARCFU (O28354) 50S ribosomal protein L3P	99	1e-20
34	RL3_METJA (P54014) 50S ribosomal protein L3P	98	2e-20
35	RL3_METMA (Q8PV50) 50S ribosomal protein L3P	98	2e-20
36	RL3_METTH (O26110) 50S ribosomal protein L3P	94	4e-19
37	RL3_METVA (Q9UWG2) 50S ribosomal protein L3P	94	5e-19
38	RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P	89	9e-18
39	RL3_THEVO (Q97BX7) 50S ribosomal protein L3P	88	3e-17
40	RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P	86	1e-16
41	RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P	82	1e-15
42	RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)	79	1e-14
43	RL3_NANEQ (P60458) 50S ribosomal protein L3P	73	9e-13
44	RL3_SULTO (Q975I1) 50S ribosomal protein L3P	71	3e-12
45	RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P	70	7e-12
46	RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P	68	3e-11
47	RL3_SULAC (Q4JB40) 50S ribosomal protein L3P	63	9e-10
48	RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase...	39	0.010
49	RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase...	39	0.010
50	RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase...	39	0.014
51	CY42_TRYBB (Q99396) Receptor-type adenylate cyclase GRESAG 4.2 (...	31	2.8
52	RL3_MYCPU (Q98PY0) 50S ribosomal protein L3	31	3.7
53	IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)	31	3.7
54	IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)	31	3.7
55	RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase...	30	4.9
56	HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG...	30	4.9
57	PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)	30	4.9
58	ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor...	30	4.9
59	BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3...	30	6.3
60	POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)	30	6.3
61	PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)	30	8.3
62	RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase...	30	8.3

>RL3_ORYSA (P35684) 60S ribosomal protein L3|
          Length = 388

 Score =  313 bits (802), Expect = 3e-85
 Identities = 149/156 (95%), Positives = 152/156 (97%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 478
           VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK G
Sbjct: 232 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSG 291

Query: 477 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 298
           QE+H A TEFDRTEKDITPMGGFPHYGVVK DYLMIKGCCVGPKKRVVTLRQSLLKQTSR
Sbjct: 292 QESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSR 351

Query: 297 LALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           LALEEIKLKF+DTSSKFGHGRFQTTDEKQRF+GKLK
Sbjct: 352 LALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 387

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>RL3B_ARATH (P22738) 60S ribosomal protein L3|
          Length = 389

 Score =  293 bits (751), Expect = 2e-79
 Identities = 135/154 (87%), Positives = 146/154 (94%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 478
           VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY++GKVG
Sbjct: 232 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVG 291

Query: 477 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 298
           QETH A TE+DRTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQ+LLKQTSR
Sbjct: 292 QETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSR 351

Query: 297 LALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGK 196
           LA+EEIKLKF+D +S  GHGRFQT+ EK +FYG+
Sbjct: 352 LAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 385

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>RL3A_ARATH (P17094) 60S ribosomal protein L3|
          Length = 388

 Score =  288 bits (737), Expect = 1e-77
 Identities = 133/155 (85%), Positives = 145/155 (93%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 478
           VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE+NKK+Y++GKVG
Sbjct: 232 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVG 291

Query: 477 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 298
            E H A TE+DRTEKD+TPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLL QTSR
Sbjct: 292 TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSR 351

Query: 297 LALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKL 193
           LALEEIKLKF+DT+S FGHGRFQT+ EK RFY ++
Sbjct: 352 LALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 386

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>RL3_DROME (O16797) 60S ribosomal protein L3|
          Length = 415

 Score =  231 bits (588), Expect = 2e-60
 Identities = 111/162 (68%), Positives = 129/162 (79%), Gaps = 7/162 (4%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ 475
           +RW   +LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKK+Y+IG  G 
Sbjct: 232 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIG-AGI 290

Query: 474 ETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 316
            T D       ASTE+D T+K ITPMGGFPHYG V  D++MIKGCC+G KKR++TLR+SL
Sbjct: 291 HTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSL 350

Query: 315 LKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           LK T R ALE+IKLKF+DTSSK GHGRFQT  +K  F G LK
Sbjct: 351 LKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 392

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>RL3_TOXCA (P49149) 60S ribosomal protein L3|
          Length = 401

 Score =  224 bits (571), Expect = 2e-58
 Identities = 102/158 (64%), Positives = 127/158 (80%), Gaps = 3/158 (1%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK--- 484
           +RW   +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y++GK   
Sbjct: 232 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCL 291

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 304
             +   +  T++D TEK + PMGGFPHYG+V  D++MI+GCCVG KKR +TLR+SL+ QT
Sbjct: 292 TEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQT 351

Query: 303 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
            R A E+I LK++DTSSKFGHGRFQT  EK+ F GKLK
Sbjct: 352 KRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 389

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>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)|
          Length = 402

 Score =  221 bits (563), Expect = 1e-57
 Identities = 107/161 (66%), Positives = 131/161 (81%), Gaps = 6/161 (3%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG---- 487
           +RW   +LPRKTHRGLRKVACIGAWHPARV++TVARAGQ GYHHRTE+NKK+YKIG    
Sbjct: 232 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYL 291

Query: 486 -KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 313
            K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL
Sbjct: 292 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLL 351

Query: 312 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
            QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 352 VQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_ASHGO (Q759R7) 60S ribosomal protein L3|
          Length = 388

 Score =  221 bits (563), Expect = 1e-57
 Identities = 107/154 (69%), Positives = 123/154 (79%)
 Frame = -1

Query: 651 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 472
           RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N KVY+IGK G E
Sbjct: 233 RWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDE 292

Query: 471 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 292
            + A+TEFDRT+K ITPMGGF HYG V  D++M+KG   G +KRVVTLR+SL   TSR A
Sbjct: 293 GN-AATEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRA 351

Query: 291 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           LEE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 352 LEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385

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>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)|
          Length = 402

 Score =  219 bits (559), Expect = 4e-57
 Identities = 106/161 (65%), Positives = 131/161 (81%), Gaps = 6/161 (3%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG---- 487
           +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKIG    
Sbjct: 232 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 291

Query: 486 -KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 313
            K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL
Sbjct: 292 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLL 351

Query: 312 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
            QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 352 VQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_BOVIN (P39872) 60S ribosomal protein L3|
          Length = 402

 Score =  219 bits (559), Expect = 4e-57
 Identities = 106/161 (65%), Positives = 131/161 (81%), Gaps = 6/161 (3%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG---- 487
           +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKIG    
Sbjct: 232 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 291

Query: 486 -KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 313
            K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL
Sbjct: 292 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLL 351

Query: 312 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
            QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 352 VQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 392

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>RL3_CAEEL (P50880) 60S ribosomal protein L3|
          Length = 401

 Score =  219 bits (559), Expect = 4e-57
 Identities = 101/158 (63%), Positives = 129/158 (81%), Gaps = 3/158 (1%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG- 478
           +RW   +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ G+HHRT +N K+Y+IGK   
Sbjct: 233 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSAL 292

Query: 477 --QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 304
             +  ++ STEFD T+K ITPMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+ QT
Sbjct: 293 TEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQT 352

Query: 303 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
            R+A E+I LK++DTSSK GHGRFQTT EK+ F GKLK
Sbjct: 353 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390

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>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)|
           (TARBP-B)
          Length = 402

 Score =  219 bits (558), Expect = 6e-57
 Identities = 106/161 (65%), Positives = 131/161 (81%), Gaps = 6/161 (3%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG---- 487
           +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+YKIG    
Sbjct: 232 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 291

Query: 486 -KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 313
            K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL
Sbjct: 292 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLL 351

Query: 312 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
            QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 352 VQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_DICDI (P34113) 60S ribosomal protein L3|
          Length = 397

 Score =  217 bits (552), Expect = 3e-56
 Identities = 100/160 (62%), Positives = 124/160 (77%), Gaps = 4/160 (2%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKV- 481
           + RWGV +LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKK+Y+IG+  
Sbjct: 232 IKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQ 291

Query: 480 ---GQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLK 310
              G++     TEFD TEK I PMGGF HYG+VK ++LM+KGC  GP+KR +TLR+S+  
Sbjct: 292 PEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITT 351

Query: 309 QTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           QT R ALE+I LKF+DTSSKFGHG  QT ++K +++G  K
Sbjct: 352 QTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKK 391

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>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3|
          Length = 401

 Score =  216 bits (551), Expect = 4e-56
 Identities = 100/158 (63%), Positives = 128/158 (81%), Gaps = 3/158 (1%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG- 478
           +RW   +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ G+HHRT +N K+Y+IGK   
Sbjct: 233 SRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSAL 292

Query: 477 --QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 304
             +  ++ STEFD T+K I PMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+ QT
Sbjct: 293 TEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQT 352

Query: 303 SRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
            R+A E+I LK++DTSSK GHGRFQTT EK+ F GKLK
Sbjct: 353 KRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390

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>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like|
          Length = 406

 Score =  215 bits (548), Expect = 8e-56
 Identities = 103/162 (63%), Positives = 124/162 (76%), Gaps = 7/162 (4%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ 475
           +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+Y+IG+ G 
Sbjct: 232 SRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGR-GL 290

Query: 474 ETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 316
              D       AST +D T+K ITP+GGFPHYG V  D++M+KGC  G KKRV+TLR+SL
Sbjct: 291 HMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSL 350

Query: 315 LKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           L   SR ALE I+LKF+DT+SKFGHGRFQT  EK+ F G  K
Sbjct: 351 LVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 392

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>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3|
          Length = 387

 Score =  214 bits (544), Expect = 2e-55
 Identities = 101/154 (65%), Positives = 122/154 (79%)
 Frame = -1

Query: 651 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 472
           RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KVY++GK G +
Sbjct: 232 RWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGK-GDD 290

Query: 471 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 292
             +A+TEFDRT+K ITPMGGF HYG +  D++++KG   G +KRVVTLR+SL   TSR A
Sbjct: 291 EANAATEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKA 350

Query: 291 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           LEE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 351 LEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384

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>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3|
          Length = 402

 Score =  214 bits (544), Expect = 2e-55
 Identities = 105/161 (65%), Positives = 130/161 (80%), Gaps = 6/161 (3%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG---- 487
           +RW   +LPRKTHRGLRKVACIGA HPARV+++VARAGQ GYHHRTE+NKK+YKIG    
Sbjct: 232 SRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 291

Query: 486 -KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL 313
            K G+   ++AST++D ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL
Sbjct: 292 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLL 351

Query: 312 KQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
            QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK
Sbjct: 352 VQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of|
           killer protein 8) (Trichodermin resistance protein)
          Length = 386

 Score =  213 bits (543), Expect = 3e-55
 Identities = 99/154 (64%), Positives = 121/154 (78%)
 Frame = -1

Query: 651 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 472
           RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N K+Y++GK G +
Sbjct: 231 RWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGK-GDD 289

Query: 471 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 292
             + +T FDRT+K ITPMGGF HYG +K D++M+KGC  G +KR+VTLR+SL   TSR A
Sbjct: 290 EANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKA 349

Query: 291 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           LEE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 350 LEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 383

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>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3|
          Length = 387

 Score =  212 bits (539), Expect = 9e-55
 Identities = 101/154 (65%), Positives = 121/154 (78%)
 Frame = -1

Query: 651 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 472
           RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y+IGK G +
Sbjct: 232 RWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGK-GDD 290

Query: 471 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 292
             +A+T FDRT+K I PMGGF HYG+V  D++M+KG   G KKRVVTLR+SL   TSR A
Sbjct: 291 EGNAATNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKA 350

Query: 291 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           +EE+ LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 351 VEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384

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>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like|
          Length = 406

 Score =  212 bits (539), Expect = 9e-55
 Identities = 101/162 (62%), Positives = 123/162 (75%), Gaps = 7/162 (4%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ 475
           +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+++IG+ G 
Sbjct: 232 SRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGR-GP 290

Query: 474 ETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 316
              D       AST +D T K ITP+GGFPHYG V  D++M+KGC  G KKRV+TLR+SL
Sbjct: 291 HMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSL 350

Query: 315 LKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           L   SR A+E I+LKF+DT+SKFGHGRFQT  EK+ F G  K
Sbjct: 351 LVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 392

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>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B|
          Length = 387

 Score =  211 bits (538), Expect = 1e-54
 Identities = 101/154 (65%), Positives = 121/154 (78%)
 Frame = -1

Query: 651 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 472
           RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y+IG  G +
Sbjct: 231 RWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDD 289

Query: 471 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 292
             +AST+FD TEK ITPMGGF  YGVV+ D++M+ G   GP KRV+TLR+SLL  TSR A
Sbjct: 290 AKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKA 349

Query: 291 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           LE + LK++DT+SKFGHGRFQT  E ++F G LK
Sbjct: 350 LEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383

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>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A|
          Length = 387

 Score =  211 bits (538), Expect = 1e-54
 Identities = 101/154 (65%), Positives = 121/154 (78%)
 Frame = -1

Query: 651 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 472
           RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y+IG  G +
Sbjct: 231 RWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDD 289

Query: 471 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 292
             +AST+FD TEK ITPMGGF  YGVV+ D++M+ G   GP KRV+TLR+SLL  TSR A
Sbjct: 290 AKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKA 349

Query: 291 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           LE + LK++DT+SKFGHGRFQT  E ++F G LK
Sbjct: 350 LEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383

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>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)|
          Length = 392

 Score =  211 bits (537), Expect = 2e-54
 Identities = 100/155 (64%), Positives = 124/155 (80%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ 475
           +RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT  N KV++IGK G 
Sbjct: 232 SRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGK-GS 290

Query: 474 ETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRL 295
           +  +AST+FD ++K ITPMGGF  YG VK DY+M+KG   G KKRV+TLR++L  QTSR 
Sbjct: 291 DEGNASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRR 350

Query: 294 ALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           A E+++LK++DTSSKFGHG FQT +EK+ F G LK
Sbjct: 351 ATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385

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>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3|
          Length = 389

 Score =  208 bits (530), Expect = 1e-53
 Identities = 99/154 (64%), Positives = 118/154 (76%)
 Frame = -1

Query: 651 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 472
           RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N KVY++G  G E
Sbjct: 232 RWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSAGDE 291

Query: 471 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 292
           +  A TEFDRT+K I PMGGF  YG VK D++++KG   G KKR+VT+R+SL   TSR A
Sbjct: 292 SSGA-TEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRA 350

Query: 291 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
            E + LK++DT+SKFG GRFQT  EK  F G LK
Sbjct: 351 TENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384

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>RL3_NEUCR (P59671) 60S ribosomal protein L3|
          Length = 392

 Score =  204 bits (518), Expect = 2e-52
 Identities = 96/154 (62%), Positives = 120/154 (77%)
 Frame = -1

Query: 651 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 472
           RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+Y+IGK G  
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGK-GDA 291

Query: 471 THDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 292
              A+TE D T+K ITPMGGF  YG +  D++M+KG   G KKRV+TLR+S+   TSR A
Sbjct: 292 EDSAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKA 351

Query: 291 LEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
           LE+++LK++DTSS+FGHG FQT  EK++F G LK
Sbjct: 352 LEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385

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>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3|
          Length = 383

 Score =  197 bits (501), Expect = 2e-50
 Identities = 97/156 (62%), Positives = 121/156 (77%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 478
           V R+GV + PRK+ +G+RKVACIGAWHP+RV Y++ARAGQ G+H RTE NK+VY I   G
Sbjct: 226 VKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMI---G 282

Query: 477 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 298
             + +  TEFD TEK I+PMGGFPHYG V+ D++M+KG  VG +KRVVTLR+SLL+Q   
Sbjct: 283 NGSSNIKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR-- 340

Query: 297 LALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 190
            A EE+ +KFVDTSSK GHGRFQT+ EK+ FYG  K
Sbjct: 341 -AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARK 375

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>RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)|
          Length = 130

 Score =  127 bits (318), Expect = 4e-29
 Identities = 59/101 (58%), Positives = 77/101 (76%), Gaps = 6/101 (5%)
 Frame = -1

Query: 654 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG---- 487
           +RW   +LPRKTHRGLRKVACIGAWHPAR +++VARAGQ GYHHRTE+NKK+YKIG    
Sbjct: 30  SRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEINKKIYKIGQGYL 89

Query: 486 -KVGQ-ETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMI 370
            K G+   ++  T++D ++K I P+G F HYG V  D++M+
Sbjct: 90  IKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130

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>RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P|
          Length = 365

 Score =  122 bits (305), Expect = 1e-27
 Identities = 58/136 (42%), Positives = 85/136 (62%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 478
           V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG+ G
Sbjct: 234 VKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENG 293

Query: 477 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 298
           +   D +TE      +ITP GGFPHYG+V++D++MI G   G  KR++ +R ++     +
Sbjct: 294 KLKLDENTEI-----EITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKK 348

Query: 297 LALEEIKLKFVDTSSK 250
             ++  ++ +V   SK
Sbjct: 349 PPVQRPQITYVSVESK 364

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>RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P|
          Length = 361

 Score =  119 bits (298), Expect = 8e-27
 Identities = 57/136 (41%), Positives = 83/136 (61%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 478
           V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG+ G
Sbjct: 231 VKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENG 290

Query: 477 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 298
           +         D  E +ITP GGFPHYG+V++D++MI G   G  KR++ +R ++     +
Sbjct: 291 K------LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKK 344

Query: 297 LALEEIKLKFVDTSSK 250
             ++  ++ +V   SK
Sbjct: 345 PPVQRPQITYVSVESK 360

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>RL3_PYRHO (O59418) 50S ribosomal protein L3P|
          Length = 362

 Score =  119 bits (297), Expect = 1e-26
 Identities = 57/136 (41%), Positives = 82/136 (60%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 478
           V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG+ G
Sbjct: 232 VKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENG 291

Query: 477 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 298
           +         D  E +ITP GGFPHYG+V+ D++MI G   G  KR++ +R ++     +
Sbjct: 292 K------LVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKK 345

Query: 297 LALEEIKLKFVDTSSK 250
             ++  ++ +V   SK
Sbjct: 346 PPVQRPQITYVSVESK 361

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>RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P|
          Length = 346

 Score =  110 bits (274), Expect = 5e-24
 Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  IG+
Sbjct: 214 VKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGE 273

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 304
            G+   D +      E +ITP GGFPHYG+V++D+LMI+G   G  KR++ +R ++    
Sbjct: 274 NGKLVLDGN------EIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPK 327

Query: 303 SRLALEEIKLKFVDTSSK 250
            +  +E  ++ +V   SK
Sbjct: 328 KKPPVERPQITYVSRESK 345

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>RL3_METAC (Q8TRU7) 50S ribosomal protein L3P|
          Length = 337

 Score =  101 bits (251), Expect = 2e-21
 Identities = 55/140 (39%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           V RWG+  +  K  R   LR+V  +GA++P+RVS+ V + GQ GYH RTE NK++ KIG 
Sbjct: 214 VKRWGIQLMKGKHSRQGSLRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGS 273

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 304
            G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  + 
Sbjct: 274 DGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RA 317

Query: 303 SRLALEEIKLKFVDTSSKFG 244
            +  L E  + ++   SK G
Sbjct: 318 KKADLGEPNILYISRESKQG 337

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>RL3_METKA (Q8TY90) 50S ribosomal protein L3P|
          Length = 361

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 54/116 (46%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           V RWGVT   RKT R    R +  IG   P+RV +TV  AGQ GYH RTE NK++ KIG+
Sbjct: 217 VKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGE 276

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 316
            G+E              +TP GGF +YGVV+ DY+MI G   GPKKR++ +R ++
Sbjct: 277 DGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318

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>RL3_ARCFU (O28354) 50S ribosomal protein L3P|
          Length = 331

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           V RWGV  L  K  R    R+V  +G W+P  V +TV +AGQ G+H RTE NK++ KIG+
Sbjct: 207 VKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGE 266

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 304
            G+E              ITP GGF HYGV++  Y+++ G   GP KR++ +R ++  + 
Sbjct: 267 NGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RP 310

Query: 303 SRLALEEIKLKFVDTSSKFG 244
            +   + + + +V T+SK G
Sbjct: 311 PKAHFDGVNIVYVSTTSKQG 330

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>RL3_METJA (P54014) 50S ribosomal protein L3P|
          Length = 335

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
 Frame = -1

Query: 657 VTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           V RWGV  +  +   +G+ R V  IG W P  V ++V   GQ GYH RTE NK++ KIG 
Sbjct: 211 VKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGN 270

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 304
            G E              ITP GGF HYGV++ +Y+++KG   GP KR++ LR+++  Q 
Sbjct: 271 NGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQE 316

Query: 303 SRLALEEIKLKFVDTSSKFG 244
             + + EI   ++ T+SK G
Sbjct: 317 PLIKVPEI--TYISTTSKQG 334

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>RL3_METMA (Q8PV50) 50S ribosomal protein L3P|
          Length = 337

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           V RWG+     K  R   LR++  +G+++P+RVS+ V + GQ GYH RTE NK++ KIG 
Sbjct: 214 VKRWGIQLQKGKHSRQGSLRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGS 273

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 304
            G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  + 
Sbjct: 274 DGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RA 317

Query: 303 SRLALEEIKLKFVDTSSKFG 244
            +  L E  + ++   SK G
Sbjct: 318 KKADLGEPNILYISRESKQG 337

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>RL3_METTH (O26110) 50S ribosomal protein L3P|
          Length = 337

 Score = 94.0 bits (232), Expect = 4e-19
 Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 3/141 (2%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           V RWG+     K  R    R +  +G W P+R  +TV +AGQ GYH RTE NK++ KIG 
Sbjct: 211 VKRWGIRIQYGKAARSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIG- 269

Query: 483 VGQETHDASTEFDRTEKD-ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQ 307
                       D +E D + P GGF  YG+V+ DY+MIKG   GP KR+V LR+++  +
Sbjct: 270 ------------DASEADLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--R 315

Query: 306 TSRLALEEIKLKFVDTSSKFG 244
            +    E  ++ ++ T+SK G
Sbjct: 316 AAGKQEEAPQINYISTASKQG 336

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>RL3_METVA (Q9UWG2) 50S ribosomal protein L3P|
          Length = 334

 Score = 93.6 bits (231), Expect = 5e-19
 Identities = 54/141 (38%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
 Frame = -1

Query: 657 VTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK++ K+G 
Sbjct: 210 VKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGS 269

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 304
            G E              ITP GGF +YG VK  Y+++KG   GP KR+V LR ++    
Sbjct: 270 EGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAE 315

Query: 303 SRLALEEIKLKFVDTSSKFGH 241
            +  L E+   ++   SK G+
Sbjct: 316 DKFGLPEV--TYISKESKQGN 334

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>RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P|
          Length = 338

 Score = 89.4 bits (220), Expect = 9e-18
 Identities = 52/113 (46%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
 Frame = -1

Query: 657 VTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           + R+GVT LPR  K  +G R+   IG   PA V +T  R GQ G+H RTE NK++ KIG+
Sbjct: 216 IKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGE 274

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLR 325
            G E              ITP  GFPHYGVVK  Y++I+G   G +KR+V LR
Sbjct: 275 NGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313

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>RL3_THEVO (Q97BX7) 50S ribosomal protein L3P|
          Length = 331

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 52/138 (37%), Positives = 72/138 (52%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 478
           V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ GY  RT  N +V K  K  
Sbjct: 207 VQRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSK-- 264

Query: 477 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 298
               DA T        I   GGF HYG+VK DY+++ G   GP KR++ +R    ++   
Sbjct: 265 --GEDADT--------INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKVP- 313

Query: 297 LALEEIKLKFVDTSSKFG 244
             ++ +KL ++   SK G
Sbjct: 314 -DIDNVKLDYISLESKQG 330

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>RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P|
          Length = 331

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 51/138 (36%), Positives = 71/138 (51%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 478
           V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+  RT  N +V K G   
Sbjct: 207 VKRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYGN-- 264

Query: 477 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 298
                   E D     I   GGF HYG VK DY+++ G   G  KR++ +R    ++   
Sbjct: 265 ------KEEVD----SINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP- 313

Query: 297 LALEEIKLKFVDTSSKFG 244
             +EE+KL+++   SK G
Sbjct: 314 -DIEEVKLEYISLESKQG 330

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>RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P|
          Length = 334

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 51/140 (36%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  I  
Sbjct: 212 VKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIND 271

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 304
            G E               TP GGFP+YG V   Y ++KG   GP++R+V  R ++    
Sbjct: 272 -GDEP--------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNE 316

Query: 303 SRLALEEIKLKFVDTSSKFG 244
           S     E+  ++V T+S  G
Sbjct: 317 SPRLDPEV--RYVSTASNQG 334

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>RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)|
          Length = 337

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  IG+
Sbjct: 215 VKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGE 274

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 316
             + T D               GGF +YG V   Y ++KG   GP KR+V  R ++
Sbjct: 275 GDEPTVD---------------GGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 315

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>RL3_NANEQ (P60458) 50S ribosomal protein L3P|
          Length = 321

 Score = 72.8 bits (177), Expect = 9e-13
 Identities = 42/127 (33%), Positives = 65/127 (51%)
 Frame = -1

Query: 657 VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVG 478
           + R+ V R   K+ +G+RKV  IG+  P R+  TV   GQ GYH RTE NK + KIG   
Sbjct: 204 IKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIG--- 260

Query: 477 QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSR 298
                         + +   GG+  YG V    +++KG   GP+KR++ LR+++     +
Sbjct: 261 --------------EPLNVEGGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQ 306

Query: 297 LALEEIK 277
             +E I+
Sbjct: 307 EKVEGIE 313

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>RL3_SULTO (Q975I1) 50S ribosomal protein L3P|
          Length = 343

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 52/140 (37%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
 Frame = -1

Query: 657 VTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           V R+GV  LPR  K  +G RKV   G    +  SY V + GQ GYH RTE NK++ KI  
Sbjct: 222 VKRYGVVELPRWHKHRKGSRKVGARGPSF-STPSY-VPQPGQMGYHRRTEYNKRILKISD 279

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 304
              E              I P GGF +YG+V+  YL+I+G  +G KKR + LR  +  + 
Sbjct: 280 DPNE--------------INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI--RP 323

Query: 303 SRLALEEIKLKFVDTSSKFG 244
           S +     K+ +V+  S+ G
Sbjct: 324 SWIPQSAPKITYVNLYSQQG 343

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>RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P|
          Length = 344

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
 Frame = -1

Query: 657 VTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           + RWGV  LPR  K  +G R++      H     +   +AGQ G+H RTE NK++  I  
Sbjct: 218 IKRWGVKELPRWHKHRKGSRRIGARS--HGRSTFWETPQAGQTGFHRRTEYNKRILMIDD 275

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL--K 310
            G +              +TP GGF  YGVV++ ++M+ G   G  KR + +R ++   +
Sbjct: 276 DGYK--------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPE 321

Query: 309 QTSRLALEEIKLKFVDTSSKFG 244
              +L + + ++ ++  +SK G
Sbjct: 322 WYLKLGVRKPEITYISLASKQG 343

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>RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P|
          Length = 351

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
 Frame = -1

Query: 657 VTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           + R+ V  LPR  K  +G RK+   G       SYT  + GQ G+H RTE NK++ KIG 
Sbjct: 230 IKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD 287

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQ 322
                           K+I P GGF  YG+V+  Y++++G  +G KKR + LR+
Sbjct: 288 --------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLRE 327

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>RL3_SULAC (Q4JB40) 50S ribosomal protein L3P|
          Length = 342

 Score = 62.8 bits (151), Expect = 9e-10
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%)
 Frame = -1

Query: 657 VTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 484
           + R+ V   PR  K  +G RK+   G    +  SY V + GQ G+H RTE NK++ KIG 
Sbjct: 221 IKRYSVVEFPRWHKHRKGSRKIGARGP-SISTPSY-VPQPGQLGFHRRTEYNKRIIKIGD 278

Query: 483 VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQT 304
                            +I P GG  +YG+VK  YL+I+G  +G +KR + LR  +    
Sbjct: 279 --------------NVNEINPAGGIVNYGLVKNTYLVIEGSVLGSRKRPLFLRYPIRPSW 324

Query: 303 SRLALEEIKLKFVDTSSKFG 244
           S  +    K+ +V+ +S+ G
Sbjct: 325 SPESAP--KITYVNLASQQG 342

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>RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
 Frame = +1

Query: 133 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 288
           + H+ F   +++T+++LR+S+ L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 289 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 462
           Q    G + + LA+   TLL  D   LD     L HTI+ ++  G  V L  +  S G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290

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>RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
 Frame = +1

Query: 133 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 288
           + H+ F   +++T+++LR+S+ L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 289 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 462
           Q    G + + LA+   TLL  D   LD     L HTI+ ++  G  V L  +  S G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290

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>RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
 Frame = +1

Query: 133 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 288
           + H+ F   +++T+++LR+S  L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSGILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 289 QCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 462
           Q    G + + LA+   TLL  D   LD     L HTI+ ++  G  V L  +  S G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290

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>CY42_TRYBB (Q99396) Receptor-type adenylate cyclase GRESAG 4.2 (EC 4.6.1.1)|
           (ATP pyrophosphate-lyase) (Adenylyl cyclase) (Fragment)
          Length = 572

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -1

Query: 567 VSYTVARAGQNGYHHRTEMNKKVYKIGKVGQ-----ETHDASTEFDRTEKDITPMGGFPH 403
           + Y     G + Y        +   +G  GQ     ET+ + +  +R++ D+TP+GG P 
Sbjct: 401 IRYDEVTKGYDYYGQTANTAARTESVGNGGQVLMTCETYHSLSTAERSQFDVTPLGGVPL 460

Query: 402 YGV 394
            GV
Sbjct: 461 RGV 463

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>RL3_MYCPU (Q98PY0) 50S ribosomal protein L3|
          Length = 266

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -1

Query: 393 VKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 265
           VK + L++KG   GPKK  V +++   K  S+ A++ + L+ V
Sbjct: 182 VKNNILLVKGAVPGPKKGFVVIKECAKKIPSKEAVKLVDLEIV 224

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>IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)|
          Length = 363

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 178 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 327
           SS+++ L I   +L+  L TA  KLG  +  +  D  +     +++QGLA
Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152

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>IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)|
          Length = 363

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 178 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 327
           SS+++ L I   +L+  L TA  KLG  +  +  D  +     +++QGLA
Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152

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>RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 366

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +1

Query: 154 KMTQLILRSSSSLELAIEPLL--LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 327
           ++ +++LR+S  L + ++P    ++     + P+L         D+ Q +T+G ++  + 
Sbjct: 216 ELAEIVLRNSKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVC 275

Query: 328 EGHHTLLWPDTASLDHQVVGLHHTIVR 408
           E    ++  D   LD Q      T++R
Sbjct: 276 EAALDMIGIDHLGLDKQDRNYLDTLMR 302

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>HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 315

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 172 LRSSSSLELAIEPLL----LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHH 339
           LR  S L LA+ P L    L G ++T + KL  G    E D +   T GL + GLA  HH
Sbjct: 129 LRRQSQL-LALRPDLDIISLRGNVDTRLRKLMDG----EFDAIVMATAGLKRLGLAAPHH 183

Query: 340 TLLWP 354
            +L P
Sbjct: 184 EVLAP 188

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>PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)|
          Length = 1003

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 537 SDQPEQQCRTP*QDARHQYRQPCEDLCGSCGEGG 638
           +D+ E++ R P +++R   R    D C SC EGG
Sbjct: 33  TDEAEKRSRKPEKESRRSGRATNHDSCDSCKEGG 66

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>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 924

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/66 (24%), Positives = 27/66 (40%)
 Frame = +1

Query: 232 ETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHHTLLWPDTASLDHQVVGLHHTIVRE 411
           E+  P     ++  E   L C  RG    G+      + WP+   +  +  G +H +   
Sbjct: 670 ESTCPSHQTWLEGAEASALACAARGRPSPGVRCSREGIPWPEQQRVSREDAGTYHCVATN 729

Query: 412 ATHGSD 429
           A HG+D
Sbjct: 730 A-HGTD 734

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>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)|
            (Hemidesmosomal plaque protein) (Dystonia musculorum
            protein) (Dystonin)
          Length = 7389

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 18/55 (32%), Positives = 33/55 (60%)
 Frame = +1

Query: 145  RFDKMTQLILRSSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGL 309
            R+  +T+L    + +LE A++   L G L++   +L   +DK+E++ L  ET+GL
Sbjct: 5516 RYKDITKLSADVAKTLEHALQ---LAGQLQSMHKELCNWLDKVEVELLSYETQGL 5567

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>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 18/85 (21%), Positives = 35/85 (41%)
 Frame = +2

Query: 266  TNLSLISSSARREVCFSRDWRRVTTRFFGPTQHPLIIR*SAFTTP**GKPPMGVMSFSVL 445
            T  +++S+++R +     DWR    R F  +QH                         V 
Sbjct: 1400 TQATIVSNASRSDP----DWRYTVVRIFAKSQH------------------------KVN 1431

Query: 446  SNSVEASWVSCPTLPILYTFLFISV 520
              S+  SW +C TL +++ F+ +++
Sbjct: 1432 DGSIFGSWKACQTLALMHDFVILTL 1456

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>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)|
          Length = 1004

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 537 SDQPEQQCRTP*QDARHQYRQPCEDLCGSCGEGG 638
           +D+ E++ R P ++ R   R    D C SC EGG
Sbjct: 33  TDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGG 66

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>RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 338

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +1

Query: 133 VSHVRF---DKMTQLILRSSSSLELAI--EPLLLVGGLETAVPKLGRGVDKLELDFLQCE 297
           +SH+ +     + +++LRS+   +  I  E    +       P++   + K   DF Q +
Sbjct: 178 ISHMEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQ 237

Query: 298 TRGLLQQGLAEGHHTLLWPDTASLDH 375
           + G + + +A+   TLL  D   LD+
Sbjct: 238 SDGKIDRAIADKALTLLQVDHQGLDY 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,892,315
Number of Sequences: 219361
Number of extensions: 2110007
Number of successful extensions: 6040
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 5760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5983
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result