ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066797.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 2e-78
2ref|XM_474500.1| Oryza sativa (japonica cultivar-group), predic... 287 2e-74
3gb|BT018516.1| Zea mays clone EL01N0430F11.d mRNA sequence 276 9e-71
4emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4,... 172 1e-39
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 172 1e-39
6gb|AC006192.2|AC006192 Arabidopsis thaliana BAC T24G3 from chrom... 44 0.59
7gb|AY286123.1| Cyanidioschyzon merolae DBV201 chloroplast, compl... 42 2.3
8emb|BX936389.6| Zebrafish DNA sequence from clone CH211-178H11, ... 42 2.3
9emb|BX072570.4| Zebrafish DNA sequence from clone DKEY-17E6 in l... 42 2.3
10emb|AL670024.7| Mouse DNA sequence from clone RP23-254F7 on chro... 42 2.3
11dbj|AB002583.1| Cyanidioschyzon merolae chloroplast DNA, complet... 42 2.3
12gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence 40 9.2
13gb|AC105379.11| Trypanosoma brucei chromosome 3 clone RPCI93-30P... 40 9.2
14gb|AC103674.10| Mus musculus chromosome 15, clone RP24-329A8, co... 40 9.2
15gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete... 40 9.2
16ref|NM_008474.1| Mus musculus keratin complex 2, basic, gene 16 ... 40 9.2
17gb|BC114971.1| Mus musculus keratin complex 2, basic, gene 16, m... 40 9.2
18gb|AY028607.1| Mus musculus type II 65kD keratin (Krt2-16) mRNA,... 40 9.2
19gb|AC117241.4| Mus musculus BAC clone RP24-147H15 from chromosom... 40 9.2
20ref|XM_961171.1| Plasmodium falciparum 3D7 hypothetical protein ... 40 9.2
21gb|AC123898.40| Medicago truncatula clone mth2-31m6, complete se... 40 9.2
22gb|AC126071.5| Rattus norvegicus 10 BAC CH230-209B21 (Children's... 40 9.2
23emb|AL009048.1|HS433G13 Human DNA sequence from clone RP3-433G13... 40 9.2
24emb|CR382401.1| Plasmodium falciparum chromosome 6, complete seq... 40 9.2
25gb|AC174344.9| Medicago truncatula clone mth2-167b8, complete se... 40 9.2
26dbj|D83196.1| Limulus sp. mRNA for alpha-2-macroglobulin, comple... 40 9.2
27gb|AC121245.17| Medicago truncatula clone mth2-33g3, complete se... 40 9.2
28gb|AC007538.5| Homo sapiens Xq28 PAC RPCI6-224C24 (Roswell Park ... 40 9.2
29gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 9.2
30emb|BX004763.9| Zebrafish DNA sequence from clone CH211-131K2, c... 40 9.2
31gb|AC009392.6| Drosophila melanogaster, chromosome 2L, region 23... 40 9.2
32gb|AC148971.3| Medicago truncatula chromosome 2 BAC clone mth2-7... 40 9.2
33gb|AC148610.9| Mus musculus chromosome 17, clone RP24-260D18, co... 40 9.2
34gb|AY941829.1| Podarcis sicula RH2 cone opsin (RH2) mRNA, comple... 40 9.2
35gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, r... 40 9.2
36gb|AF119040.1|AF119040 Lycopersicon esculentum haplotype Norther... 40 9.2
37gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10... 40 9.2
38emb|CT030182.8| Mouse DNA sequence from clone RP23-21N15 on chro... 40 9.2
39emb|AL772290.3| Mouse DNA sequence from clone RP23-66O4 on chrom... 40 9.2 
>dbj|AK066797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079L05, full
            insert sequence
          Length = 3272

 Score =  301 bits (152), Expect = 2e-78
 Identities = 241/270 (89%), Gaps = 3/270 (1%)
 Strand = Plus / Minus

                                                                        
Query: 407  aacctaactatctccttatcacagggcctttgtacaaacctctagcaacaacaaagccct 466
            ||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct: 2894 aacctaactatctccttattacagggcctttatacaaacctctcgcgacaacaaagccct 2835

                                                                        
Query: 467  ctggaggctgatggtcctccaattcctccaaccagactacctcagagctatctatttcac 526
            ||||||| |||||||||||||||||||||||||| | ||| || | ||||| ||||||||
Sbjct: 2834 ctggaggttgatggtcctccaattcctccaaccaaattacttctgcgctatttatttcac 2775

                                                                        
Query: 527  tcggcaaaacaacagatggc---tccttcactggtgacttccggaagtatgaacagtctc 583
              ||||||||||||| |||    ||| | ||||  ||||||||||||||||||||||| |
Sbjct: 2774 caggcaaaacaacaggtggtgtttcccttactgaagacttccggaagtatgaacagtccc 2715

                                                                        
Query: 584  tcccattctcagcggaataaggtggagaaaggacgtcaaagagtgcacaaggtgtgatgg 643
            |||| |||||||| |||||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct: 2714 tccccttctcagcagaataaggaggagaaaggacatcaaagagagcacaaggtgtgatcg 2655

                                          
Query: 644  ctctgaaagtgtggatgttaccacctctat 673
            ||||||||||||||||||||||||||||||
Sbjct: 2654 ctctgaaagtgtggatgttaccacctctat 2625
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>ref|XM_474500.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 846

 Score =  287 bits (145), Expect = 2e-74
 Identities = 234/263 (88%), Gaps = 3/263 (1%)
 Strand = Plus / Minus

                                                                       
Query: 414 ctatctccttatcacagggcctttgtacaaacctctagcaacaacaaagccctctggagg 473
           |||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 846 ctatctccttattacagggcctttatacaaacctctcgcgacaacaaagccctctggagg 787

                                                                       
Query: 474 ctgatggtcctccaattcctccaaccagactacctcagagctatctatttcactcggcaa 533
            |||||||||||||||||||||||||| | ||| || | ||||| ||||||||  |||||
Sbjct: 786 ttgatggtcctccaattcctccaaccaaattacttctgcgctatttatttcaccaggcaa 727

                                                                       
Query: 534 aacaacagatggc---tccttcactggtgacttccggaagtatgaacagtctctcccatt 590
           |||||||| |||    ||| | ||||  ||||||||||||||||||||||| ||||| ||
Sbjct: 726 aacaacaggtggtgtttcccttactgaagacttccggaagtatgaacagtccctcccctt 667

                                                                       
Query: 591 ctcagcggaataaggtggagaaaggacgtcaaagagtgcacaaggtgtgatggctctgaa 650
           |||||| |||||||| ||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 666 ctcagcagaataaggaggagaaaggacatcaaagagagcacaaggtgtgatcgctctgaa 607

                                  
Query: 651 agtgtggatgttaccacctctat 673
           |||||||||||||||||||||||
Sbjct: 606 agtgtggatgttaccacctctat 584
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>gb|BT018516.1| Zea mays clone EL01N0430F11.d mRNA sequence
          Length = 1432

 Score =  276 bits (139), Expect = 9e-71
 Identities = 226/255 (88%)
 Strand = Plus / Minus

                                                                       
Query: 415 tatctccttatcacagggcctttgtacaaacctctagcaacaacaaagccctctggaggc 474
           |||||||| || ||||||||||| |||| |||||| |||||||||||||| ||||| |||
Sbjct: 959 tatctcctaattacagggcctttatacagacctcttgcaacaacaaagccttctgggggc 900

                                                                       
Query: 475 tgatggtcctccaattcctccaaccagactacctcagagctatctatttcactcggcaaa 534
           |||||||||||||| ||||||||||| ||||||| |||||||||||| |||   ||||||
Sbjct: 899 tgatggtcctccaactcctccaaccaaactacctgagagctatctatctcagcaggcaaa 840

                                                                       
Query: 535 acaacagatggctccttcactggtgacttccggaagtatgaacagtctctcccattctca 594
           ||||||| |||||  |||| | | || || |||||||||||||||| || ||||| ||||
Sbjct: 839 acaacaggtggctgattcatttgagaatttcggaagtatgaacagtgtcgcccatcctca 780

                                                                       
Query: 595 gcggaataaggtggagaaaggacgtcaaagagtgcacaaggtgtgatggctctgaaagtg 654
           ||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 779 gcggagtatggtggagaaagaacgtcaaagagagcacaaggtgtgatggctctgaaagtg 720

                          
Query: 655 tggatgttaccacct 669
           |||||||||||||||
Sbjct: 719 tggatgttaccacct 705
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>emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0040D15,
             complete sequence
          Length = 130618

 Score =  172 bits (87), Expect = 1e-39
 Identities = 108/115 (93%)
 Strand = Plus / Plus

                                                                         
Query: 559   gacttccggaagtatgaacagtctctcccattctcagcggaataaggtggagaaaggacg 618
             ||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| 
Sbjct: 19043 gacttccggaagtatgaacagtccctccccttctcagcagaataaggaggagaaaggaca 19102

                                                                    
Query: 619   tcaaagagtgcacaaggtgtgatggctctgaaagtgtggatgttaccacctctat 673
             |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 19103 tcaaagagagcacaaggtgtgatcgctctgaaagtgtggatgttaccacctctat 19157



 Score =  161 bits (81), Expect = 4e-36
 Identities = 120/133 (90%)
 Strand = Plus / Plus

                                                                         
Query: 407   aacctaactatctccttatcacagggcctttgtacaaacctctagcaacaacaaagccct 466
             ||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct: 18795 aacctaactatctccttattacagggcctttatacaaacctctcgcgacaacaaagccct 18854

                                                                         
Query: 467   ctggaggctgatggtcctccaattcctccaaccagactacctcagagctatctatttcac 526
             ||||||| |||||||||||||||||||||||||| | ||| || | ||||| ||||||||
Sbjct: 18855 ctggaggttgatggtcctccaattcctccaaccaaattacttctgcgctatttatttcac 18914

                          
Query: 527   tcggcaaaacaac 539
               |||||||||||
Sbjct: 18915 caggcaaaacaac 18927
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  172 bits (87), Expect = 1e-39
 Identities = 108/115 (93%)
 Strand = Plus / Plus

                                                                           
Query: 559     gacttccggaagtatgaacagtctctcccattctcagcggaataaggtggagaaaggacg 618
               ||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| 
Sbjct: 3552777 gacttccggaagtatgaacagtccctccccttctcagcagaataaggaggagaaaggaca 3552836

                                                                      
Query: 619     tcaaagagtgcacaaggtgtgatggctctgaaagtgtggatgttaccacctctat 673
               |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3552837 tcaaagagagcacaaggtgtgatcgctctgaaagtgtggatgttaccacctctat 3552891



 Score =  161 bits (81), Expect = 4e-36
 Identities = 120/133 (90%)
 Strand = Plus / Plus

                                                                           
Query: 407     aacctaactatctccttatcacagggcctttgtacaaacctctagcaacaacaaagccct 466
               ||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct: 3552529 aacctaactatctccttattacagggcctttatacaaacctctcgcgacaacaaagccct 3552588

                                                                           
Query: 467     ctggaggctgatggtcctccaattcctccaaccagactacctcagagctatctatttcac 526
               ||||||| |||||||||||||||||||||||||| | ||| || | ||||| ||||||||
Sbjct: 3552589 ctggaggttgatggtcctccaattcctccaaccaaattacttctgcgctatttatttcac 3552648

                            
Query: 527     tcggcaaaacaac 539
                 |||||||||||
Sbjct: 3552649 caggcaaaacaac 3552661
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>gb|AC006192.2|AC006192 Arabidopsis thaliana BAC T24G3 from chromosome V near 70 cM, complete
             sequence
          Length = 97905

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 56    aaatcaatttttctgaaacaat 77
             ||||||||||||||||||||||
Sbjct: 46244 aaatcaatttttctgaaacaat 46223
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>gb|AY286123.1| Cyanidioschyzon merolae DBV201 chloroplast, complete genome
          Length = 149705

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 265   tcacccacaacaggtggtgtg 285
             |||||||||||||||||||||
Sbjct: 89582 tcacccacaacaggtggtgtg 89562
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>emb|BX936389.6| Zebrafish DNA sequence from clone CH211-178H11, complete sequence
          Length = 110830

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 50    cacaccaaatcaatttttctg 70
             |||||||||||||||||||||
Sbjct: 48739 cacaccaaatcaatttttctg 48759
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>emb|BX072570.4| Zebrafish DNA sequence from clone DKEY-17E6 in linkage group 12, complete
              sequence
          Length = 171655

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 50     cacaccaaatcaatttttctg 70
              |||||||||||||||||||||
Sbjct: 105134 cacaccaaatcaatttttctg 105114
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>emb|AL670024.7| Mouse DNA sequence from clone RP23-254F7 on chromosome X, complete
              sequence
          Length = 199747

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 89     aagcccatgccacttgttcta 109
              |||||||||||||||||||||
Sbjct: 144631 aagcccatgccacttgttcta 144611
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>dbj|AB002583.1| Cyanidioschyzon merolae chloroplast DNA, complete genome, strain:10D
          Length = 149987

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 265    tcacccacaacaggtggtgtg 285
              |||||||||||||||||||||
Sbjct: 125748 tcacccacaacaggtggtgtg 125768
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>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 584    tcccattctcagcggaataa 603
              ||||||||||||||||||||
Sbjct: 483561 tcccattctcagcggaataa 483580
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>gb|AC105379.11| Trypanosoma brucei chromosome 3 clone RPCI93-30P12, complete sequence
          Length = 165197

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 584   tcccattctcagcggaataa 603
             ||||||||||||||||||||
Sbjct: 77607 tcccattctcagcggaataa 77626
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>gb|AC103674.10| Mus musculus chromosome 15, clone RP24-329A8, complete sequence
          Length = 142740

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 472    ggctgatggtcctccaattcctcc 495
              ||||||||| ||||||||||||||
Sbjct: 103564 ggctgatgggcctccaattcctcc 103587
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>gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete sequence
          Length = 164920

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    ggcaagaactctccaatctc 142
              ||||||||||||||||||||
Sbjct: 152453 ggcaagaactctccaatctc 152472
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>ref|NM_008474.1| Mus musculus keratin complex 2, basic, gene 16 (Krt2-16), mRNA
          Length = 2530

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 472 ggctgatggtcctccaattcctcc 495
           ||||||||| ||||||||||||||
Sbjct: 448 ggctgatgggcctccaattcctcc 425
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>gb|BC114971.1| Mus musculus keratin complex 2, basic, gene 16, mRNA (cDNA clone
           MGC:140837 IMAGE:40039508), complete cds
          Length = 2161

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 472 ggctgatggtcctccaattcctcc 495
           ||||||||| ||||||||||||||
Sbjct: 444 ggctgatgggcctccaattcctcc 421
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>gb|AY028607.1| Mus musculus type II 65kD keratin (Krt2-16) mRNA, complete cds
          Length = 2530

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 472 ggctgatggtcctccaattcctcc 495
           ||||||||| ||||||||||||||
Sbjct: 448 ggctgatgggcctccaattcctcc 425
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>gb|AC117241.4| Mus musculus BAC clone RP24-147H15 from chromosome 17, complete sequence
          Length = 191713

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    gaccagcagcattgctccag 221
              ||||||||||||||||||||
Sbjct: 112911 gaccagcagcattgctccag 112930
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>ref|XM_961171.1| Plasmodium falciparum 3D7 hypothetical protein (PFF1365c) partial mRNA
          Length = 30864

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    ctgaaacaatcattaggtga 87
             ||||||||||||||||||||
Sbjct: 30220 ctgaaacaatcattaggtga 30239
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>gb|AC123898.40| Medicago truncatula clone mth2-31m6, complete sequence
          Length = 152299

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     atcaatttttctgaaacaat 77
              ||||||||||||||||||||
Sbjct: 148797 atcaatttttctgaaacaat 148816
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>gb|AC126071.5| Rattus norvegicus 10 BAC CH230-209B21 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 227741

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 458    caaagccctctggaggctga 477
              ||||||||||||||||||||
Sbjct: 121260 caaagccctctggaggctga 121279
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>emb|AL009048.1|HS433G13 Human DNA sequence from clone RP3-433G13 on chromosome Xq26.3-28
             Contains a SMT3 suppressor of mif two 3 homolog 1 (yeast)
             (SMT3H1) pseudogene, complete sequence
          Length = 58790

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   actacctcagagctatctat 521
             ||||||||||||||||||||
Sbjct: 50711 actacctcagagctatctat 50730
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>emb|CR382401.1| Plasmodium falciparum chromosome 6, complete sequence; segment 4/5
          Length = 337203

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    ctgaaacaatcattaggtga 87
             ||||||||||||||||||||
Sbjct: 77970 ctgaaacaatcattaggtga 77951
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>gb|AC174344.9| Medicago truncatula clone mth2-167b8, complete sequence
          Length = 141135

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    atcaatttttctgaaacaat 77
             ||||||||||||||||||||
Sbjct: 40166 atcaatttttctgaaacaat 40147
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>dbj|D83196.1| Limulus sp. mRNA for alpha-2-macroglobulin, complete cds
          Length = 4678

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 60   caatttttctgaaacaatcattag 83
            ||||||||||||||||| ||||||
Sbjct: 3448 caatttttctgaaacaaccattag 3425
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>gb|AC121245.17| Medicago truncatula clone mth2-33g3, complete sequence
          Length = 125763

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    atcaatttttctgaaacaat 77
             ||||||||||||||||||||
Sbjct: 43788 atcaatttttctgaaacaat 43807
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>gb|AC007538.5| Homo sapiens Xq28 PAC RPCI6-224C24 (Roswell Park Cancer Institute Human
              PAC Library) complete sequence
          Length = 178544

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    actacctcagagctatctat 521
              ||||||||||||||||||||
Sbjct: 160242 actacctcagagctatctat 160223
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 23      cataatgacaccgaataatc 42
               ||||||||||||||||||||
Sbjct: 1687564 cataatgacaccgaataatc 1687583
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>emb|BX004763.9| Zebrafish DNA sequence from clone CH211-131K2, complete sequence
          Length = 86545

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   ttcatctgataaaagagcca 186
             ||||||||||||||||||||
Sbjct: 58024 ttcatctgataaaagagcca 58043
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>gb|AC009392.6| Drosophila melanogaster, chromosome 2L, region 23A-23E, BAC clone
              BACR42J13, complete sequence
          Length = 179125

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    ggcaagaactctccaatctc 142
              ||||||||||||||||||||
Sbjct: 175660 ggcaagaactctccaatctc 175641
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>gb|AC148971.3| Medicago truncatula chromosome 2 BAC clone mth2-79e23, complete
             sequence
          Length = 108394

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    atcaatttttctgaaacaat 77
             ||||||||||||||||||||
Sbjct: 76693 atcaatttttctgaaacaat 76674
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>gb|AC148610.9| Mus musculus chromosome 17, clone RP24-260D18, complete sequence
          Length = 186632

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   gaccagcagcattgctccag 221
             ||||||||||||||||||||
Sbjct: 34066 gaccagcagcattgctccag 34047
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>gb|AY941829.1| Podarcis sicula RH2 cone opsin (RH2) mRNA, complete cds
          Length = 1676

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 427  acagggcctttgtacaaacc 446
            ||||||||||||||||||||
Sbjct: 1645 acagggcctttgtacaaacc 1626
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>gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, region 23C1-23C5, P1 clones
              DS02190 and DS00906, complete sequence
          Length = 163403

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    ggcaagaactctccaatctc 142
              ||||||||||||||||||||
Sbjct: 130636 ggcaagaactctccaatctc 130655
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>gb|AF119040.1|AF119040 Lycopersicon esculentum haplotype Northern Lights Hcr9 gene cluster,
             complete sequence
          Length = 34891

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   aactctccaatctcaaaaga 148
             ||||||||||||||||||||
Sbjct: 26197 aactctccaatctcaaaaga 26216



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  aactctccaatctcaaaaga 148
            ||||||||||||||||||||
Sbjct: 8298 aactctccaatctcaaaaga 8317
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>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete
             sequence
          Length = 314957

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   ggcaagaactctccaatctc 142
             ||||||||||||||||||||
Sbjct: 70063 ggcaagaactctccaatctc 70044
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>emb|CT030182.8| Mouse DNA sequence from clone RP23-21N15 on chromosome 13, complete
              sequence
          Length = 218811

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    agccctctggaggctgatgg 480
              ||||||||||||||||||||
Sbjct: 127676 agccctctggaggctgatgg 127695
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>emb|AL772290.3| Mouse DNA sequence from clone RP23-66O4 on chromosome 4, complete
             sequence
          Length = 110623

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 450   agcaacaacaaagccctctg 469
             ||||||||||||||||||||
Sbjct: 93778 agcaacaacaaagccctctg 93759


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,497,482
Number of Sequences: 3902068
Number of extensions: 6497482
Number of successful extensions: 121253
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121126
Number of HSP's gapped (non-prelim): 127
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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