ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13l02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188632.1| Oryza sativa (japonica cultivar-group), Ozsa823... 406 e-110
2dbj|AK120694.1| Oryza sativa (japonica cultivar-group) cDNA clon... 406 e-110
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 208 2e-50
4dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D... 208 2e-50
5ref|NM_112497.1| Arabidopsis thaliana catalytic AT3G16260 mRNA, ... 48 0.037
6gb|AC119856.13| Mus musculus chromosome 5, clone RP23-256B18, co... 48 0.037
7gb|AY086950.1| Arabidopsis thaliana clone 29889 mRNA, complete s... 48 0.037
8dbj|AK117304.1| Arabidopsis thaliana At3g16260 mRNA for unknown ... 48 0.037
9gb|CP000110.1| Synechococcus sp. CC9605, complete genome 44 0.58
10gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 2.3
11gb|AC145123.2| Homo sapiens chromosome 8, clone XXfos-82949F4, c... 42 2.3
12gb|BC036794.1| Homo sapiens, clone IMAGE:5587337, mRNA 42 2.3
13emb|CR627103.1| Homo sapiens mRNA; cDNA DKFZp781D034 (from clone... 42 2.3
14dbj|AK024145.1| Homo sapiens cDNA FLJ14083 fis, clone HEMBB1002381 42 2.3
15dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 42 2.3
16gb|AC108002.3| Homo sapiens chromosome 8, clone CTD-2292P10, com... 42 2.3
17dbj|AK025687.1| Homo sapiens cDNA: FLJ22034 fis, clone HEP08814,... 42 2.3
18dbj|AK024975.1| Homo sapiens cDNA: FLJ21322 fis, clone COL02358,... 42 2.3
19dbj|AB209002.1| Homo sapiens mRNA for jerky homolog variant protein 42 2.3
20ref|NM_111835.2| Arabidopsis thaliana transcription factor AT3G1... 40 9.0
21ref|XM_581925.2| PREDICTED: Bos taurus similar to guanine nucleo... 40 9.0
22gb|AC142344.3| Pan troglodytes BAC clone CH251-349N3 from X, com... 40 9.0
23gb|AC145687.4| Pan troglodytes BAC clone CH251-281C1 from X, com... 40 9.0
24gb|AC125028.8| Mus musculus chromosome 16, clone RP24-85G10, com... 40 9.0
25gb|AE009190.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 9.0
26gb|AC146187.2| Pan troglodytes BAC clone RP43-25A10 from 7, comp... 40 9.0
27gb|AY568659.1| Arabidopsis thaliana At3g10000 (At3g10000) mRNA, ... 40 9.0
28gb|AC113110.17| Mus musculus chromosome 16, clone RP23-328A9, co... 40 9.0
29gb|AC010927.5|ATAC010927 Arabidopsis thaliana chromosome III BAC... 40 9.0
30emb|AL356961.13| Human DNA sequence from clone RP11-450H6 on chr... 40 9.0
31gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 9.0
32gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, com... 40 9.0
33emb|AJ630487.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 9.0
34emb|BX663520.9| Zebrafish DNA sequence from clone DKEY-105H12 in... 40 9.0
35emb|BX548159.5| Zebrafish DNA sequence from clone CH211-163L3 in... 40 9.0
36gb|AC161378.2| Mus musculus BAC clone RP23-202A6 from chromosome... 40 9.0
37gb|AC154429.4| Mus musculus BAC clone RP24-202G18 from chromosom... 40 9.0
38dbj|AK083060.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 40 9.0
39gb|AC141634.4| Mus musculus BAC clone RP24-69A18 from chromosome... 40 9.0
40gb|AC002086.1|AC002086 Human PAC clone RP3-525N14 from Xq23, com... 40 9.0
41dbj|AK107616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
42gb|AC122387.3| Mus musculus BAC clone RP24-76F22 from 6, complet... 40 9.0
43emb|AL672298.4| Mouse DNA sequence from clone RP23-456D8 on chro... 40 9.0 
>ref|NM_188632.1| Oryza sativa (japonica cultivar-group), Ozsa8235 predicted mRNA
          Length = 2418

 Score =  406 bits (205), Expect = e-110
 Identities = 412/481 (85%)
 Strand = Plus / Minus

                                                                        
Query: 178  gcctccaggacctcatccgactcttcaacgaccatctcgtccttgaagaggagcttcagg 237
            |||||| ||| |||||| || || ||||| |||||||| || ||||| | ||||||||||
Sbjct: 2408 gcctcctggatctcatcagattcgtcaaccaccatctcatctttgaacaagagcttcagg 2349

                                                                        
Query: 238  tgaggcagaaccttcggcagcacgggcaaatcggcaaggtttacactcatcaggtcgaaa 297
            ||||| |||||||| ||||| || ||||| || || || || ||||||||||||||||| 
Sbjct: 2348 tgaggaagaacctttggcagtactggcaagtccgccagattcacactcatcaggtcgaac 2289

                                                                        
Query: 298  gcgatgcaggtcttgtgcatgtcgtcctcgtcaaagaccgggattttaggatatctctgg 357
            || ||||| ||||| ||||| ||  |||| ||||| || ||||||||||| ||||| |||
Sbjct: 2288 gcaatgcaagtcttttgcatatcaacctcatcaaaaactgggattttagggtatctttgg 2229

                                                                        
Query: 358  ctaaagtgggtcaggatgatgcggtacgctccagccgatgtgcctaccgctatggcttcc 417
            ||||||||||||| ||| || ||||| ||||| || ||||||||||| |||||||| |||
Sbjct: 2228 ctaaagtgggtcaagattatacggtatgctccggctgatgtgcctactgctatggcctcc 2169

                                                                        
Query: 418  ttcgttgtgctgtggttctttgcgatcgcttcgtccttcatgctgtcctcaaacgtcgcc 477
            || ||||| || |||||| | |||||||| || |||||||| ||||||||||| || |||
Sbjct: 2168 tttgttgtactatggttcctagcgatcgcctcatccttcatactgtcctcaaatgttgcc 2109

                                                                        
Query: 478  tcatgtatcagcactgtggcatctctggacgcgtctacaagagctgggcagggccgagtg 537
            |||||||| || || ||||||||||||||||| ||||||||||||||||||||||  |||
Sbjct: 2108 tcatgtattagtacagtggcatctctggacgcatctacaagagctgggcagggcctcgtg 2049

                                                                        
Query: 538  tcacctgaatatacaaccttccatcctggaattgccttcccaacactattcaccttctcc 597
            ||||||||||| |||||||||||||||||||| || || ||| ||||  |||||||||||
Sbjct: 2048 tcacctgaataaacaaccttccatcctggaatagcttttccagcactgctcaccttctcc 1989

                                                                        
Query: 598  ttggctctcaaaacaactccaaacgcctgtgcacaatgtacaacggggacactgtacaga 657
            |||||||||| |||||||||||||||||||| ||| || | ||| ||||||||||| |||
Sbjct: 1988 ttggctctcagaacaactccaaacgcctgtggacagtgcagaactgggacactgtaaaga 1929

             
Query: 658  a 658
            |
Sbjct: 1928 a 1928
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>dbj|AK120694.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170G05, full
            insert sequence
          Length = 4407

 Score =  406 bits (205), Expect = e-110
 Identities = 412/481 (85%)
 Strand = Plus / Minus

                                                                        
Query: 178  gcctccaggacctcatccgactcttcaacgaccatctcgtccttgaagaggagcttcagg 237
            |||||| ||| |||||| || || ||||| |||||||| || ||||| | ||||||||||
Sbjct: 4206 gcctcctggatctcatcagattcgtcaaccaccatctcatctttgaacaagagcttcagg 4147

                                                                        
Query: 238  tgaggcagaaccttcggcagcacgggcaaatcggcaaggtttacactcatcaggtcgaaa 297
            ||||| |||||||| ||||| || ||||| || || || || ||||||||||||||||| 
Sbjct: 4146 tgaggaagaacctttggcagtactggcaagtccgccagattcacactcatcaggtcgaac 4087

                                                                        
Query: 298  gcgatgcaggtcttgtgcatgtcgtcctcgtcaaagaccgggattttaggatatctctgg 357
            || ||||| ||||| ||||| ||  |||| ||||| || ||||||||||| ||||| |||
Sbjct: 4086 gcaatgcaagtcttttgcatatcaacctcatcaaaaactgggattttagggtatctttgg 4027

                                                                        
Query: 358  ctaaagtgggtcaggatgatgcggtacgctccagccgatgtgcctaccgctatggcttcc 417
            ||||||||||||| ||| || ||||| ||||| || ||||||||||| |||||||| |||
Sbjct: 4026 ctaaagtgggtcaagattatacggtatgctccggctgatgtgcctactgctatggcctcc 3967

                                                                        
Query: 418  ttcgttgtgctgtggttctttgcgatcgcttcgtccttcatgctgtcctcaaacgtcgcc 477
            || ||||| || |||||| | |||||||| || |||||||| ||||||||||| || |||
Sbjct: 3966 tttgttgtactatggttcctagcgatcgcctcatccttcatactgtcctcaaatgttgcc 3907

                                                                        
Query: 478  tcatgtatcagcactgtggcatctctggacgcgtctacaagagctgggcagggccgagtg 537
            |||||||| || || ||||||||||||||||| ||||||||||||||||||||||  |||
Sbjct: 3906 tcatgtattagtacagtggcatctctggacgcatctacaagagctgggcagggcctcgtg 3847

                                                                        
Query: 538  tcacctgaatatacaaccttccatcctggaattgccttcccaacactattcaccttctcc 597
            ||||||||||| |||||||||||||||||||| || || ||| ||||  |||||||||||
Sbjct: 3846 tcacctgaataaacaaccttccatcctggaatagcttttccagcactgctcaccttctcc 3787

                                                                        
Query: 598  ttggctctcaaaacaactccaaacgcctgtgcacaatgtacaacggggacactgtacaga 657
            |||||||||| |||||||||||||||||||| ||| || | ||| ||||||||||| |||
Sbjct: 3786 ttggctctcagaacaactccaaacgcctgtggacagtgcagaactgggacactgtaaaga 3727

             
Query: 658  a 658
            |
Sbjct: 3726 a 3726
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  208 bits (105), Expect = 2e-50
 Identities = 246/293 (83%)
 Strand = Plus / Minus

                                                                           
Query: 178     gcctccaggacctcatccgactcttcaacgaccatctcgtccttgaagaggagcttcagg 237
               |||||| ||| |||||| || || ||||| |||||||| || ||||| | ||||||||||
Sbjct: 7331015 gcctcctggatctcatcagattcgtcaaccaccatctcatctttgaacaagagcttcagg 7330956

                                                                           
Query: 238     tgaggcagaaccttcggcagcacgggcaaatcggcaaggtttacactcatcaggtcgaaa 297
               ||||| |||||||| ||||| || ||||| || || || || ||||||||||||||||| 
Sbjct: 7330955 tgaggaagaacctttggcagtactggcaagtccgccagattcacactcatcaggtcgaac 7330896

                                                                           
Query: 298     gcgatgcaggtcttgtgcatgtcgtcctcgtcaaagaccgggattttaggatatctctgg 357
               || ||||| ||||| ||||| ||  |||| ||||| || ||||||||||| ||||| |||
Sbjct: 7330895 gcaatgcaagtcttttgcatatcaacctcatcaaaaactgggattttagggtatctttgg 7330836

                                                                           
Query: 358     ctaaagtgggtcaggatgatgcggtacgctccagccgatgtgcctaccgctatggcttcc 417
               ||||||||||||| ||| || ||||| ||||| || ||||||||||| |||||||| |||
Sbjct: 7330835 ctaaagtgggtcaagattatacggtatgctccggctgatgtgcctactgctatggcctcc 7330776

                                                                    
Query: 418     ttcgttgtgctgtggttctttgcgatcgcttcgtccttcatgctgtcctcaaa 470
               || ||||| || |||||| | |||||||| || |||||||| |||||||||||
Sbjct: 7330775 tttgttgtactatggttcctagcgatcgcctcatccttcatactgtcctcaaa 7330723



 Score =  204 bits (103), Expect = 3e-49
 Identities = 163/183 (89%)
 Strand = Plus / Minus

                                                                           
Query: 476     cctcatgtatcagcactgtggcatctctggacgcgtctacaagagctgggcagggccgag 535
               |||||||||| || || ||||||||||||||||| ||||||||||||||||||||||  |
Sbjct: 7330328 cctcatgtattagtacagtggcatctctggacgcatctacaagagctgggcagggcctcg 7330269

                                                                           
Query: 536     tgtcacctgaatatacaaccttccatcctggaattgccttcccaacactattcaccttct 595
               ||||||||||||| |||||||||||||||||||| || || ||| ||||  |||||||||
Sbjct: 7330268 tgtcacctgaataaacaaccttccatcctggaatagcttttccagcactgctcaccttct 7330209

                                                                           
Query: 596     ccttggctctcaaaacaactccaaacgcctgtgcacaatgtacaacggggacactgtaca 655
               |||||||||||| |||||||||||||||||||| ||| || | ||| ||||||||||| |
Sbjct: 7330208 ccttggctctcagaacaactccaaacgcctgtggacagtgcagaactgggacactgtaaa 7330149

                  
Query: 656     gaa 658
               |||
Sbjct: 7330148 gaa 7330146
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>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0431F01
          Length = 143209

 Score =  208 bits (105), Expect = 2e-50
 Identities = 246/293 (83%)
 Strand = Plus / Minus

                                                                          
Query: 178    gcctccaggacctcatccgactcttcaacgaccatctcgtccttgaagaggagcttcagg 237
              |||||| ||| |||||| || || ||||| |||||||| || ||||| | ||||||||||
Sbjct: 132445 gcctcctggatctcatcagattcgtcaaccaccatctcatctttgaacaagagcttcagg 132386

                                                                          
Query: 238    tgaggcagaaccttcggcagcacgggcaaatcggcaaggtttacactcatcaggtcgaaa 297
              ||||| |||||||| ||||| || ||||| || || || || ||||||||||||||||| 
Sbjct: 132385 tgaggaagaacctttggcagtactggcaagtccgccagattcacactcatcaggtcgaac 132326

                                                                          
Query: 298    gcgatgcaggtcttgtgcatgtcgtcctcgtcaaagaccgggattttaggatatctctgg 357
              || ||||| ||||| ||||| ||  |||| ||||| || ||||||||||| ||||| |||
Sbjct: 132325 gcaatgcaagtcttttgcatatcaacctcatcaaaaactgggattttagggtatctttgg 132266

                                                                          
Query: 358    ctaaagtgggtcaggatgatgcggtacgctccagccgatgtgcctaccgctatggcttcc 417
              ||||||||||||| ||| || ||||| ||||| || ||||||||||| |||||||| |||
Sbjct: 132265 ctaaagtgggtcaagattatacggtatgctccggctgatgtgcctactgctatggcctcc 132206

                                                                   
Query: 418    ttcgttgtgctgtggttctttgcgatcgcttcgtccttcatgctgtcctcaaa 470
              || ||||| || |||||| | |||||||| || |||||||| |||||||||||
Sbjct: 132205 tttgttgtactatggttcctagcgatcgcctcatccttcatactgtcctcaaa 132153



 Score =  204 bits (103), Expect = 3e-49
 Identities = 163/183 (89%)
 Strand = Plus / Minus

                                                                          
Query: 476    cctcatgtatcagcactgtggcatctctggacgcgtctacaagagctgggcagggccgag 535
              |||||||||| || || ||||||||||||||||| ||||||||||||||||||||||  |
Sbjct: 131758 cctcatgtattagtacagtggcatctctggacgcatctacaagagctgggcagggcctcg 131699

                                                                          
Query: 536    tgtcacctgaatatacaaccttccatcctggaattgccttcccaacactattcaccttct 595
              ||||||||||||| |||||||||||||||||||| || || ||| ||||  |||||||||
Sbjct: 131698 tgtcacctgaataaacaaccttccatcctggaatagcttttccagcactgctcaccttct 131639

                                                                          
Query: 596    ccttggctctcaaaacaactccaaacgcctgtgcacaatgtacaacggggacactgtaca 655
              |||||||||||| |||||||||||||||||||| ||| || | ||| ||||||||||| |
Sbjct: 131638 ccttggctctcagaacaactccaaacgcctgtggacagtgcagaactgggacactgtaaa 131579

                 
Query: 656    gaa 658
              |||
Sbjct: 131578 gaa 131576
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>ref|NM_112497.1| Arabidopsis thaliana catalytic AT3G16260 mRNA, complete cds
          Length = 2900

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 463  tcctcaaacgtcgcctcatgtatcagcactgt 494
            ||||||||||||||||||||||| || |||||
Sbjct: 2480 tcctcaaacgtcgcctcatgtataagaactgt 2449
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>gb|AC119856.13| Mus musculus chromosome 5, clone RP23-256B18, complete sequence
          Length = 218174

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 224   agaggagcttcaggtgaggcagaa 247
             ||||||||||||||||||||||||
Sbjct: 74860 agaggagcttcaggtgaggcagaa 74883
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>gb|AY086950.1| Arabidopsis thaliana clone 29889 mRNA, complete sequence
          Length = 1617

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 463  tcctcaaacgtcgcctcatgtatcagcactgt 494
            ||||||||||||||||||||||| || |||||
Sbjct: 1195 tcctcaaacgtcgcctcatgtataagaactgt 1164
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>dbj|AK117304.1| Arabidopsis thaliana At3g16260 mRNA for unknown protein, complete
            cds, clone: RAFL16-86-L12
          Length = 2940

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 463  tcctcaaacgtcgcctcatgtatcagcactgt 494
            ||||||||||||||||||||||| || |||||
Sbjct: 2518 tcctcaaacgtcgcctcatgtataagaactgt 2487
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 199    tcttcaacgaccatctcgtcct 220
              ||||||||||||||||||||||
Sbjct: 593976 tcttcaacgaccatctcgtcct 593955
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 16      tgacctcacggtcggtggcttcatc 40
               |||||||||| ||||||||||||||
Sbjct: 3422034 tgacctcacgctcggtggcttcatc 3422058
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>gb|AC145123.2| Homo sapiens chromosome 8, clone XXfos-82949F4, complete sequence
          Length = 37635

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 510   gtctacaagagctgggcaggg 530
             |||||||||||||||||||||
Sbjct: 30286 gtctacaagagctgggcaggg 30306
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>gb|BC036794.1| Homo sapiens, clone IMAGE:5587337, mRNA
          Length = 4336

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 510  gtctacaagagctgggcaggg 530
            |||||||||||||||||||||
Sbjct: 1690 gtctacaagagctgggcaggg 1670
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>emb|CR627103.1| Homo sapiens mRNA; cDNA DKFZp781D034 (from clone DKFZp781D034)
          Length = 5584

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 510  gtctacaagagctgggcaggg 530
            |||||||||||||||||||||
Sbjct: 3879 gtctacaagagctgggcaggg 3859
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>dbj|AK024145.1| Homo sapiens cDNA FLJ14083 fis, clone HEMBB1002381
          Length = 3462

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 510  gtctacaagagctgggcaggg 530
            |||||||||||||||||||||
Sbjct: 1775 gtctacaagagctgggcaggg 1755
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 451     tccttcatgctgtcctcaaac 471
               |||||||||||||||||||||
Sbjct: 2114879 tccttcatgctgtcctcaaac 2114899
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>gb|AC108002.3| Homo sapiens chromosome 8, clone CTD-2292P10, complete sequence
          Length = 100079

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 510   gtctacaagagctgggcaggg 530
             |||||||||||||||||||||
Sbjct: 72025 gtctacaagagctgggcaggg 72005
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>dbj|AK025687.1| Homo sapiens cDNA: FLJ22034 fis, clone HEP08814, highly similar to
            AF072467 Homo sapiens (JH8) mRNA
          Length = 5765

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 510  gtctacaagagctgggcaggg 530
            |||||||||||||||||||||
Sbjct: 4050 gtctacaagagctgggcaggg 4030
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>dbj|AK024975.1| Homo sapiens cDNA: FLJ21322 fis, clone COL02358, highly similar to
           AF072467 Homo sapiens (JH8) mRNA
          Length = 2109

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 510 gtctacaagagctgggcaggg 530
           |||||||||||||||||||||
Sbjct: 391 gtctacaagagctgggcaggg 371
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>dbj|AB209002.1| Homo sapiens mRNA for jerky homolog variant protein
          Length = 7187

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 510  gtctacaagagctgggcaggg 530
            |||||||||||||||||||||
Sbjct: 5502 gtctacaagagctgggcaggg 5482
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>ref|NM_111835.2| Arabidopsis thaliana transcription factor AT3G10000 mRNA, complete
            cds
          Length = 1446

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 34   cttcatcagcaaatgcattatcag 57
            |||||||||||||| |||||||||
Sbjct: 1120 cttcatcagcaaattcattatcag 1097
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>ref|XM_581925.2| PREDICTED: Bos taurus similar to guanine nucleotide binding protein
           (G protein), alpha 13 (LOC505611), mRNA
          Length = 1381

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 ccacggcctccaggacctca 192
           ||||||||||||||||||||
Sbjct: 457 ccacggcctccaggacctca 438
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>gb|AC142344.3| Pan troglodytes BAC clone CH251-349N3 from X, complete sequence
          Length = 176197

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 561   tcctggaattgccttcccaa 580
             ||||||||||||||||||||
Sbjct: 80141 tcctggaattgccttcccaa 80160
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>gb|AC145687.4| Pan troglodytes BAC clone CH251-281C1 from X, complete sequence
          Length = 138000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 561    tcctggaattgccttcccaa 580
              ||||||||||||||||||||
Sbjct: 101925 tcctggaattgccttcccaa 101944
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>gb|AC125028.8| Mus musculus chromosome 16, clone RP24-85G10, complete sequence
          Length = 269788

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   atgcaggtcttgtgcatgtc 320
             ||||||||||||||||||||
Sbjct: 46973 atgcaggtcttgtgcatgtc 46992
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>gb|AE009190.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 216
            of 256 of the complete sequence
          Length = 10383

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 423  tgtgctgtggttctttgcga 442
            ||||||||||||||||||||
Sbjct: 8412 tgtgctgtggttctttgcga 8431
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>gb|AC146187.2| Pan troglodytes BAC clone RP43-25A10 from 7, complete sequence
          Length = 156796

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   cacggcctccaggacctcat 193
             ||||||||||||||||||||
Sbjct: 59136 cacggcctccaggacctcat 59117
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>gb|AY568659.1| Arabidopsis thaliana At3g10000 (At3g10000) mRNA, complete cds
          Length = 1446

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 34   cttcatcagcaaatgcattatcag 57
            |||||||||||||| |||||||||
Sbjct: 1120 cttcatcagcaaattcattatcag 1097
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>gb|AC113110.17| Mus musculus chromosome 16, clone RP23-328A9, complete sequence
          Length = 240173

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   atgcaggtcttgtgcatgtc 320
             ||||||||||||||||||||
Sbjct: 23806 atgcaggtcttgtgcatgtc 23787
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>gb|AC010927.5|ATAC010927 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence,
             complete sequence
          Length = 96232

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 34    cttcatcagcaaatgcattatcag 57
             |||||||||||||| |||||||||
Sbjct: 64956 cttcatcagcaaattcattatcag 64979
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>emb|AL356961.13| Human DNA sequence from clone RP11-450H6 on chromosome 13 Contains two
             novel genes and two CpG islands, complete sequence
          Length = 99469

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 119   aaagaaatacaatgtgcattgttg 142
             ||||||||||||| ||||||||||
Sbjct: 16467 aaagaaatacaatatgcattgttg 16444
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 423     tgtgctgtggttctttgcga 442
               ||||||||||||||||||||
Sbjct: 2401136 tgtgctgtggttctttgcga 2401155
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>gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, complete sequence
          Length = 177777

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 561   tcctggaattgccttcccaa 580
             ||||||||||||||||||||
Sbjct: 87685 tcctggaattgccttcccaa 87666
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>emb|AJ630487.1| Arabidopsis thaliana mRNA for hypothetical protein, clone At3g10000
          Length = 1446

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 34   cttcatcagcaaatgcattatcag 57
            |||||||||||||| |||||||||
Sbjct: 1120 cttcatcagcaaattcattatcag 1097
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>emb|BX663520.9| Zebrafish DNA sequence from clone DKEY-105H12 in linkage group 15,
              complete sequence
          Length = 248279

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 518    gagctgggcagggccgagtg 537
              ||||||||||||||||||||
Sbjct: 246311 gagctgggcagggccgagtg 246292
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>emb|BX548159.5| Zebrafish DNA sequence from clone CH211-163L3 in linkage group 15,
            complete sequence
          Length = 5350

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 518  gagctgggcagggccgagtg 537
            ||||||||||||||||||||
Sbjct: 5319 gagctgggcagggccgagtg 5338
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>gb|AC161378.2| Mus musculus BAC clone RP23-202A6 from chromosome 16, complete sequence
          Length = 219298

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     ttcatcagcaaatgcattat 54
              ||||||||||||||||||||
Sbjct: 114670 ttcatcagcaaatgcattat 114689
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>gb|AC154429.4| Mus musculus BAC clone RP24-202G18 from chromosome 16, complete
             sequence
          Length = 170875

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    ttcatcagcaaatgcattat 54
             ||||||||||||||||||||
Sbjct: 69207 ttcatcagcaaatgcattat 69226
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>dbj|AK083060.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
            enriched library, clone:C530041D10
            product:unclassifiable, full insert sequence
          Length = 2494

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   ttcatcagcaaatgcattat 54
            ||||||||||||||||||||
Sbjct: 1212 ttcatcagcaaatgcattat 1231
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>gb|AC141634.4| Mus musculus BAC clone RP24-69A18 from chromosome 6, complete sequence
          Length = 227680

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   caggtcttgtgcatgtcgtc 323
             ||||||||||||||||||||
Sbjct: 40752 caggtcttgtgcatgtcgtc 40733
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>gb|AC002086.1|AC002086 Human PAC clone RP3-525N14 from Xq23, complete sequence
          Length = 112686

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 561   tcctggaattgccttcccaa 580
             ||||||||||||||||||||
Sbjct: 48361 tcctggaattgccttcccaa 48380
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>dbj|AK107616.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-C11, full
            insert sequence
          Length = 1535

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 247  accttcggcagcacgggcaa 266
            ||||||||||||||||||||
Sbjct: 1016 accttcggcagcacgggcaa 1035
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>gb|AC122387.3| Mus musculus BAC clone RP24-76F22 from 6, complete sequence
          Length = 191058

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    caggtcttgtgcatgtcgtc 323
              ||||||||||||||||||||
Sbjct: 175671 caggtcttgtgcatgtcgtc 175652
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>emb|AL672298.4| Mouse DNA sequence from clone RP23-456D8 on chromosome X, complete
             sequence
          Length = 204050

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 118   aaaagaaatacaatgtgcattgtt 141
             |||||||||||||||| |||||||
Sbjct: 23578 aaaagaaatacaatgttcattgtt 23555


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,858,797
Number of Sequences: 3902068
Number of extensions: 4858797
Number of successful extensions: 85091
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84927
Number of HSP's gapped (non-prelim): 164
length of query: 659
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 636
effective length of database: 17,143,297,704
effective search space: 10903137339744
effective search space used: 10903137339744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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