>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit 4)|
            (snRNA-activating protein complex 190 kDa subunit) (SNAPc
            190 kDa subunit) (Proximal sequence element-binding
            transcription factor alpha subunit) (PSE-binding factor
            alpha
          Length = 1469

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
 Frame = +1

Query: 355  GEASVASHCSTVKSCCAQPMWGPVAVTST*LQYQPWCAPAPSDVTFAQHGACSMHGPRPL 534
            G ++     ST+++    P++     T+      P   P    V+  + G      P   
Sbjct: 973  GTSAKDKRLSTMQALPLAPVFSEAEGTAPAASQAPALGPGQISVSCPESGLGQSQAPAAS 1032

Query: 535  KMSRLPRS**SWPAPIMPPHFARSPIRMPLPSEPSSVTPI-----AESVP 669
            +   LP +         PP    +P   PLP +P S+T I     A SVP
Sbjct: 1033 RKQGLPEA---------PPFLPAAPSPTPLPVQPLSLTHIGGPHVATSVP 1073

>VINT_LAMBD (P03700) Integrase|
          Length = 356

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 554 RGNLDIFSGRGPCMEHAPCWANVTSDGAGAHHGWYCNYVEVTAT 423
           + N+++FSG     +H P  A + SD +   H W   Y ++ A+
Sbjct: 50  QANIELFSGH----KHKPLTARINSDNSVTLHSWLDRYEKILAS 89

>VINT_BP434 (P27078) Integrase|
          Length = 356

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 554 RGNLDIFSGRGPCMEHAPCWANVTSDGAGAHHGWYCNYVEVTAT 423
           + N+++FSG     +H P  A + SD +   H W   Y ++ A+
Sbjct: 50  QANIELFSGH----KHKPLTARINSDNSVTLHSWLDRYEKILAS 89

>AMID_RHORH (P84650) Enantioselective amidase (EC 3.5.1.4)|
          Length = 517

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 22/71 (30%), Positives = 29/71 (40%)
 Frame = +3

Query: 411 HVGPRGRDLDVVAVPAVVRAGTVGCDVRPARRVLHARPATAEDVEVAALVIVVAGAHHAA 590
           H+GP  R +   A+   V AGT G D R A   +      A   E A L +VV       
Sbjct: 229 HLGPMTRTVGDAAMMLTVLAGTDGLDPRQADHRIEPVDYLAALAEPAGLRVVVVTEGFDT 288

Query: 591 PFRQVTDPDAL 623
           P +     DA+
Sbjct: 289 PVQDAAVDDAV 299

>YB88_YEAST (P38330) Protein YBR238C|
          Length = 731

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 NNRNWPAKTNHAHRSNRTTNSRSYFYNNNNMSH 228
           NN N  A+ N  + +N   N+R++ +NNN   H
Sbjct: 83  NNNNHLAQNNSNNSNNHHNNNRNHHHNNNRNHH 115

>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)|
           (AtRAD23-3)
          Length = 419

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 571 PAPIMPPHFARSPIRMPLPSEPSSVTPIAESVP 669
           PAP  PP  A +P   P+ +  +  TPI E VP
Sbjct: 120 PAPTRPPPPAPTPTPAPVAATETVTTPIPEPVP 152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,940,490
Number of Sequences: 219361
Number of extensions: 1307952
Number of successful extensions: 5298
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5213
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)