| Clone Name | rbags13k18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L11873.1|BLYVATP57B Hordeum vulgare vacuolar ATPase B subunit mRNA, complete cds Length = 1778 Score = 618 bits (312), Expect = e-174 Identities = 394/423 (93%), Gaps = 5/423 (1%) Strand = Plus / Minus Query: 4 tgctgcgcaatncagggnaaangaanaccaganaatggnctagctngtgactcgaggcta 63 |||||| |||| ||||| ||| ||| |||||| ||||| |||||| |||||||||||||| Sbjct: 1734 tgctgcacaatacaggg-aaatgaaaaccagaaaatggtctagcttgtgactcgaggcta 1676 Query: 64 catggcaagatnacaaagctgccaggtgcacaagacatgtggggtacaactngggcatac 123 ||||| || | ||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 1675 catggaaa--ttacaaagctgccaggtgcacaagacatgtggggtacaacttgtgcatac 1618 Query: 124 agactgaaagaataggattggactatntagcgtagcaaaatgatagtncaactntggatn 183 ||||||||||| ||||||| |||||| |||||||||||||||||||| ||||| ||||| Sbjct: 1617 agactgaaaga-taggatttgactatatagcgtagcaaaatgatagtacaactttggatt 1559 Query: 184 tctctcttattcaagctgctcttaatgaaaaaattannnnnnnatgaacaaaaaggatca 243 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1558 tctctcttattcaagctgctcttaatgaaaaaattatttttttatgaacaaaaaggatca 1499 Query: 244 atgggtggcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaa 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1498 atgggtggcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgca-gaa 1440 Query: 304 gttcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaatgttcc 363 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1439 gttcacgggggaatatacgtagcaaagtccatgccagatcaagtgactgaaaaatgttcc 1380 Query: 364 gagtatcatatgctccttgtgctacaaatttcctctcgaacttgtccaggaattctaaat 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1379 gagtatcatatgctccttgtgctacaaatttcctctcgaacttgtccaggaattctaaat 1320 Query: 424 aga 426 ||| Sbjct: 1319 aga 1317
>gb|AF375052.1|AF375052 Oryza sativa vacuolar ATPase B subunit mRNA, complete cds Length = 1947 Score = 149 bits (75), Expect = 9e-33 Identities = 159/186 (85%), Gaps = 1/186 (0%) Strand = Plus / Minus Query: 239 gatcaatgggtggcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgc 298 ||||| ||||| ||||||||||||||| | |||||||| ||||||||||| ||||| || Sbjct: 1613 gatcagtgggtagcatctctgctgtagtactgatccaatgtcttcgcagggatacgatgg 1554 Query: 299 atgaagttcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaat 358 | |||| ||||| |||||||| | ||||| |||||||| || |||||||||||||| || Sbjct: 1553 a-gaagctcacgagggaatatgcgaagcaatgtccatgctaggtcaagtgactgaaagat 1495 Query: 359 gttccgagtatcatatgctccttgtgctacaaatttcctctcgaacttgtccaggaattc 418 ||| | ||||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 1494 gtttcttgtatcatatgctccttgtgtaacaaatttcctctcaaatttgtcaaggaattc 1435 Query: 419 taaata 424 ||||| Sbjct: 1434 caaata 1429
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 149 bits (75), Expect = 9e-33 Identities = 159/186 (85%), Gaps = 1/186 (0%) Strand = Plus / Plus Query: 239 gatcaatgggtggcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgc 298 ||||| ||||| ||||||||||||||| | |||||||| ||||||||||| ||||| || Sbjct: 21615722 gatcagtgggtagcatctctgctgtagtactgatccaatgtcttcgcagggatacgatgg 21615781 Query: 299 atgaagttcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaat 358 | |||| ||||| |||||||| | ||||| |||||||| || |||||||||||||| || Sbjct: 21615782 a-gaagctcacgagggaatatgcgaagcaatgtccatgctaggtcaagtgactgaaagat 21615840 Query: 359 gttccgagtatcatatgctccttgtgctacaaatttcctctcgaacttgtccaggaattc 418 ||| | ||||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 21615841 gtttcttgtatcatatgctccttgtgtaacaaatttcctctcaaatttgtcaaggaattc 21615900 Query: 419 taaata 424 ||||| Sbjct: 21615901 caaata 21615906
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 149 bits (75), Expect = 9e-33 Identities = 159/186 (85%), Gaps = 1/186 (0%) Strand = Plus / Plus Query: 239 gatcaatgggtggcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgc 298 ||||| ||||| ||||||||||||||| | |||||||| ||||||||||| ||||| || Sbjct: 172906 gatcagtgggtagcatctctgctgtagtactgatccaatgtcttcgcagggatacgatgg 172965 Query: 299 atgaagttcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaat 358 | |||| ||||| |||||||| | ||||| |||||||| || |||||||||||||| || Sbjct: 172966 a-gaagctcacgagggaatatgcgaagcaatgtccatgctaggtcaagtgactgaaagat 173024 Query: 359 gttccgagtatcatatgctccttgtgctacaaatttcctctcgaacttgtccaggaattc 418 ||| | ||||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 173025 gtttcttgtatcatatgctccttgtgtaacaaatttcctctcaaatttgtcaaggaattc 173084 Query: 419 taaata 424 ||||| Sbjct: 173085 caaata 173090
>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062E01 Length = 161804 Score = 149 bits (75), Expect = 9e-33 Identities = 159/186 (85%), Gaps = 1/186 (0%) Strand = Plus / Plus Query: 239 gatcaatgggtggcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgc 298 ||||| ||||| ||||||||||||||| | |||||||| ||||||||||| ||||| || Sbjct: 14653 gatcagtgggtagcatctctgctgtagtactgatccaatgtcttcgcagggatacgatgg 14712 Query: 299 atgaagttcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaat 358 | |||| ||||| |||||||| | ||||| |||||||| || |||||||||||||| || Sbjct: 14713 a-gaagctcacgagggaatatgcgaagcaatgtccatgctaggtcaagtgactgaaagat 14771 Query: 359 gttccgagtatcatatgctccttgtgctacaaatttcctctcgaacttgtccaggaattc 418 ||| | ||||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 14772 gtttcttgtatcatatgctccttgtgtaacaaatttcctctcaaatttgtcaaggaattc 14831 Query: 419 taaata 424 ||||| Sbjct: 14832 caaata 14837
>dbj|AK099907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116A19, full insert sequence Length = 1940 Score = 149 bits (75), Expect = 9e-33 Identities = 159/186 (85%), Gaps = 1/186 (0%) Strand = Plus / Minus Query: 239 gatcaatgggtggcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgc 298 ||||| ||||| ||||||||||||||| | |||||||| ||||||||||| ||||| || Sbjct: 1606 gatcagtgggtagcatctctgctgtagtactgatccaatgtcttcgcagggatacgatgg 1547 Query: 299 atgaagttcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaat 358 | |||| ||||| |||||||| | ||||| |||||||| || |||||||||||||| || Sbjct: 1546 a-gaagctcacgagggaatatgcgaagcaatgtccatgctaggtcaagtgactgaaagat 1488 Query: 359 gttccgagtatcatatgctccttgtgctacaaatttcctctcgaacttgtccaggaattc 418 ||| | ||||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 1487 gtttcttgtatcatatgctccttgtgtaacaaatttcctctcaaatttgtcaaggaattc 1428 Query: 419 taaata 424 ||||| Sbjct: 1427 caaata 1422
>dbj|AK064802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D11, full insert sequence Length = 1933 Score = 149 bits (75), Expect = 9e-33 Identities = 159/186 (85%), Gaps = 1/186 (0%) Strand = Plus / Minus Query: 239 gatcaatgggtggcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgc 298 ||||| ||||| ||||||||||||||| | |||||||| ||||||||||| ||||| || Sbjct: 1595 gatcagtgggtagcatctctgctgtagtactgatccaatgtcttcgcagggatacgatgg 1536 Query: 299 atgaagttcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaat 358 | |||| ||||| |||||||| | ||||| |||||||| || |||||||||||||| || Sbjct: 1535 a-gaagctcacgagggaatatgcgaagcaatgtccatgctaggtcaagtgactgaaagat 1477 Query: 359 gttccgagtatcatatgctccttgtgctacaaatttcctctcgaacttgtccaggaattc 418 ||| | ||||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 1476 gtttcttgtatcatatgctccttgtgtaacaaatttcctctcaaatttgtcaaggaattc 1417 Query: 419 taaata 424 ||||| Sbjct: 1416 caaata 1411
>dbj|AK060816.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-A03, full insert sequence Length = 1406 Score = 149 bits (75), Expect = 9e-33 Identities = 159/186 (85%), Gaps = 1/186 (0%) Strand = Plus / Minus Query: 239 gatcaatgggtggcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgc 298 ||||| ||||| ||||||||||||||| | |||||||| ||||||||||| ||||| || Sbjct: 1072 gatcagtgggtagcatctctgctgtagtactgatccaatgtcttcgcagggatacgatgg 1013 Query: 299 atgaagttcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaat 358 | |||| ||||| |||||||| | ||||| |||||||| || |||||||||||||| || Sbjct: 1012 a-gaagctcacgagggaatatgcgaagcaatgtccatgctaggtcaagtgactgaaagat 954 Query: 359 gttccgagtatcatatgctccttgtgctacaaatttcctctcgaacttgtccaggaattc 418 ||| | ||||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 953 gtttcttgtatcatatgctccttgtgtaacaaatttcctctcaaatttgtcaaggaattc 894 Query: 419 taaata 424 ||||| Sbjct: 893 caaata 888
>dbj|AB055106.1| Oryza sativa (japonica cultivar-group) V-ATPase B gene for vacuolar ATPase B subunit, complete cds Length = 6033 Score = 149 bits (75), Expect = 9e-33 Identities = 159/186 (85%), Gaps = 1/186 (0%) Strand = Plus / Minus Query: 239 gatcaatgggtggcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgc 298 ||||| ||||| ||||||||||||||| | |||||||| ||||||||||| ||||| || Sbjct: 5321 gatcagtgggtagcatctctgctgtagtactgatccaatgtcttcgcagggatacgatgg 5262 Query: 299 atgaagttcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaat 358 | |||| ||||| |||||||| | ||||| |||||||| || |||||||||||||| || Sbjct: 5261 a-gaagctcacgagggaatatgcgaagcaatgtccatgctaggtcaagtgactgaaagat 5203 Query: 359 gttccgagtatcatatgctccttgtgctacaaatttcctctcgaacttgtccaggaattc 418 ||| | ||||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 5202 gtttcttgtatcatatgctccttgtgtaacaaatttcctctcaaatttgtcaaggaattc 5143 Query: 419 taaata 424 ||||| Sbjct: 5142 caaata 5137
>gb|BT017191.1| Zea mays clone EL01N0370H08.c mRNA sequence Length = 1571 Score = 119 bits (60), Expect = 8e-24 Identities = 144/171 (84%), Gaps = 1/171 (0%) Strand = Plus / Minus Query: 251 gcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacg 310 ||||||||||| ||| | || ||||||||||| || ||||||||||| | ||||||| || Sbjct: 1155 gcatctctgctatagtactggtccaaggtctttgctggaatacggtgga-gaagttcgcg 1097 Query: 311 ggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatc 370 ||||| || | ||||| |||||||| ||||| |||||||| || |||||||| || || Sbjct: 1096 agggaagatccgaagcaatgtccatgcaagatcgagtgactggaagatgttccgtgtgtc 1037 Query: 371 atatgctccttgtgctacaaatttcctctcgaacttgtccaggaattctaa 421 |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| Sbjct: 1036 atatgctccttgtgtcacaaacttcctctcaaacttgtcaaggaactctaa 986
>gb|BT016866.1| Zea mays clone Contig699 mRNA sequence Length = 1480 Score = 119 bits (60), Expect = 8e-24 Identities = 144/171 (84%), Gaps = 1/171 (0%) Strand = Plus / Plus Query: 251 gcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacg 310 ||||||||||| ||| | || ||||||||||| || ||||||||||| | ||||||| || Sbjct: 375 gcatctctgctatagtactggtccaaggtctttgctggaatacggtgga-gaagttcgcg 433 Query: 311 ggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatc 370 ||||| || | ||||| |||||||| ||||| |||||||| || |||||||| || || Sbjct: 434 agggaagatccgaagcaatgtccatgcaagatcgagtgactggaagatgttccgtgtgtc 493 Query: 371 atatgctccttgtgctacaaatttcctctcgaacttgtccaggaattctaa 421 |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| Sbjct: 494 atatgctccttgtgtcacaaacttcctctcaaacttgtcaaggaactctaa 544
>gb|AY104180.1| Zea mays PCO062733 mRNA sequence Length = 2013 Score = 119 bits (60), Expect = 8e-24 Identities = 144/171 (84%), Gaps = 1/171 (0%) Strand = Plus / Minus Query: 251 gcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacg 310 ||||||||||| ||| | || |||||||||||||| || |||||||| | ||||||| || Sbjct: 1616 gcatctctgctatagtactggtccaaggtcttcgccgggatacggtgga-gaagttcgcg 1558 Query: 311 ggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatc 370 ||||| || | ||||| |||||||| ||||| |||||||| || |||||||| || || Sbjct: 1557 agggaagatccgaagcaatgtccatgcaagatctagtgactggaagatgttccgtgtgtc 1498 Query: 371 atatgctccttgtgctacaaatttcctctcgaacttgtccaggaattctaa 421 |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| Sbjct: 1497 atatgctccttgtgtcacaaacttcctctcaaacttgtcaaggaactctaa 1447
>gb|L11862.1|BLYVATP57A Hordeum vulgare vacuolar ATPase B subunit isoform mRNA, complete cds Length = 1923 Score = 117 bits (59), Expect = 3e-23 Identities = 143/170 (84%), Gaps = 1/170 (0%) Strand = Plus / Minus Query: 251 gcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacg 310 |||||||||||||| || |||||| |||||||| || |||||||| | | || || || Sbjct: 1536 gcatctctgctgtaaaacgcatccaaagtcttcgcggggatacggtgga-gcagctcgcg 1478 Query: 311 ggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatc 370 ||||| || | ||||| |||||||| || ||||||||||| || |||||||||||||| Sbjct: 1477 agggaagatgcgaagcaatgtccatgctaggtcaagtgactggaagatgttccgagtatc 1418 Query: 371 atatgctccttgtgctacaaatttcctctcgaacttgtccaggaattcta 420 |||||||| |||||||| ||||||||||| || |||||||||||||||| Sbjct: 1417 gtatgctccctgtgctacgaatttcctctcaaatttgtccaggaattcta 1368
>gb|U07053.1|GHU07053 Gossypium hirsutum vacuolar H+-ATPase subunit B mRNA, partial cds Length = 1551 Score = 95.6 bits (48), Expect = 1e-16 Identities = 105/123 (85%), Gaps = 1/123 (0%) Strand = Plus / Minus Query: 281 ttcgcaggaatacggtgcatgaagttcacgggggaatatacntagcaaagtccatgccag 340 |||||||| |||||||| | ||||||| || || ||||||| |||| ||||| |||| Sbjct: 1123 ttcgcaggtatacggtgaa-gaagttcgcgaggaaatatacgaagcagtgtccacgccaa 1065 Query: 341 atcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctacaaatttcctctc 400 ||||||||||||||| ||||| ||||| |||||||||||||| | |||||||||||||| Sbjct: 1064 atcaagtgactgaaagatgttgcgagtgtcatatgctccttgcgtcacaaatttcctctc 1005 Query: 401 gaa 403 ||| Sbjct: 1004 gaa 1002
>gb|AY231438.1| Suaeda maritima subsp. salsa vacuolar H(+)-ATPase subunit B (VHA-B) mRNA, complete cds Length = 1974 Score = 87.7 bits (44), Expect = 3e-14 Identities = 131/159 (82%), Gaps = 1/159 (0%) Strand = Plus / Minus Query: 260 ctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaatat 319 |||||| |||| || | ||||||||| ||||||||||| | |||| ||||| ||||| || Sbjct: 1483 ctgtagtattggtcaagggtcttcgctggaatacggtgga-gaagctcacgagggaagat 1425 Query: 320 acntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctcc 379 | || | |||||||| |||||||||||||| |||||| || |||||||| ||||| Sbjct: 1424 tctaaggagtgtccatgctagatcaagtgactggaaaatggagcgggtatcataagctcc 1365 Query: 380 ttgtgctacaaatttcctctcgaacttgtccaggaattc 418 ||| || ||||| |||||||| |||||||||| |||||| Sbjct: 1364 ttgggccacaaacttcctctcaaacttgtccaagaattc 1326
>emb|AJ438590.1|MCR438590 Mesembryanthemum crystallinum mRNA for vacuolar ATPase subunit B (vha-B gene) Length = 1962 Score = 77.8 bits (39), Expect = 3e-11 Identities = 117/142 (82%), Gaps = 1/142 (0%) Strand = Plus / Minus Query: 277 ggtcttcgcaggaatacggtgcatgaagttcacgggggaatatacntagcaaagtccatg 336 |||||| |||||||||||||| | |||| ||||||||||| || | || | ||||||| Sbjct: 1504 ggtctttgcaggaatacggtgga-gaagctcacgggggaagattctgaggagggtccatg 1446 Query: 337 ccagatcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctacaaatttcc 396 ||| ||| || || || || ||| | || || |||||||||||||| || |||||||||| Sbjct: 1445 ccaaatcgagagattggaagatggtacgggtgtcatatgctccttgggcgacaaatttcc 1386 Query: 397 tctcgaacttgtccaggaattc 418 |||| |||||||||| |||||| Sbjct: 1385 tctcaaacttgtccaagaattc 1364
>ref|NM_120012.3| Arabidopsis thaliana ATP binding / hydrogen-exporting ATPase, phosphorylative mechanism / hydrogen-transporting ATP synthase, rotational mechanism /> AT4G38510 transcript variant AT4G38510.1 mRNA, complete cds Length = 2347 Score = 69.9 bits (35), Expect = 6e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 329 agtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctac 388 |||||||||||| || |||||||| || ||||| || |||||||| ||||| || || || Sbjct: 1426 agtccatgccaggtcgagtgactggaagatgtttcgggtatcataagctccctgagccac 1367 Query: 389 aaatttcctctcgaacttgtcca 411 ||| |||||||||||||| |||| Sbjct: 1366 aaacttcctctcgaacttatcca 1344
>ref|NM_001036731.1| Arabidopsis thaliana ATP binding / hydrogen-exporting ATPase, phosphorylative mechanism / hydrogen-transporting ATP synthase, rotational mechanism /> AT4G38510 transcript variant AT4G38510.4 mRNA, complete cds Length = 2386 Score = 69.9 bits (35), Expect = 6e-09 Identities = 88/106 (83%) Strand = Plus / Minus Query: 306 tcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaatgttccga 365 ||||||||||| || | || | |||||||||||| || |||||||| || ||||| || Sbjct: 1488 tcacgggggaagattctgaggagagtccatgccaggtcgagtgactggaagatgtttcgg 1429 Query: 366 gtatcatatgctccttgtgctacaaatttcctctcgaacttgtcca 411 |||||||| ||||| || || ||||| |||||||||||||| |||| Sbjct: 1428 gtatcataagctccctgagccacaaacttcctctcgaacttatcca 1383
>ref|NM_202978.1| Arabidopsis thaliana ATP binding / hydrogen-exporting ATPase, phosphorylative mechanism / hydrogen-transporting ATP synthase, rotational mechanism /> AT4G38510 transcript variant AT4G38510.2 mRNA, complete cds Length = 2377 Score = 69.9 bits (35), Expect = 6e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 329 agtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctac 388 |||||||||||| || |||||||| || ||||| || |||||||| ||||| || || || Sbjct: 1456 agtccatgccaggtcgagtgactggaagatgtttcgggtatcataagctccctgagccac 1397 Query: 389 aaatttcctctcgaacttgtcca 411 ||| |||||||||||||| |||| Sbjct: 1396 aaacttcctctcgaacttatcca 1374
>ref|NM_001036730.1| Arabidopsis thaliana ATP binding / hydrogen-exporting ATPase, phosphorylative mechanism / hydrogen-transporting ATP synthase, rotational mechanism /> AT4G38510 transcript variant AT4G38510.3 mRNA, complete cds Length = 2485 Score = 69.9 bits (35), Expect = 6e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 329 agtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctac 388 |||||||||||| || |||||||| || ||||| || |||||||| ||||| || || || Sbjct: 1564 agtccatgccaggtcgagtgactggaagatgtttcgggtatcataagctccctgagccac 1505 Query: 389 aaatttcctctcgaacttgtcca 411 ||| |||||||||||||| |||| Sbjct: 1504 aaacttcctctcgaacttatcca 1482
>ref|NM_120011.2| Arabidopsis thaliana unknown protein AT4G38500 mRNA, complete cds Length = 2818 Score = 69.9 bits (35), Expect = 6e-09 Identities = 88/106 (83%) Strand = Plus / Plus Query: 306 tcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaatgttccga 365 ||||||||||| || | || | |||||||||||| || |||||||| || ||||| || Sbjct: 2688 tcacgggggaagattctgaggagagtccatgccaggtcgagtgactggaagatgtttcgg 2747 Query: 366 gtatcatatgctccttgtgctacaaatttcctctcgaacttgtcca 411 |||||||| ||||| || || ||||| |||||||||||||| |||| Sbjct: 2748 gtatcataagctccctgagccacaaacttcctctcgaacttatcca 2793
>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89 Length = 199789 Score = 69.9 bits (35), Expect = 6e-09 Identities = 88/106 (83%) Strand = Plus / Plus Query: 306 tcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaatgttccga 365 ||||||||||| || | || | |||||||||||| || |||||||| || ||||| || Sbjct: 120161 tcacgggggaagattctgaggagagtccatgccaggtcgagtgactggaagatgtttcgg 120220 Query: 366 gtatcatatgctccttgtgctacaaatttcctctcgaacttgtcca 411 |||||||| ||||| || || ||||| |||||||||||||| |||| Sbjct: 120221 gtatcataagctccctgagccacaaacttcctctcgaacttatcca 120266
>emb|AL035539.1|ATF22I13 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project) Length = 93760 Score = 69.9 bits (35), Expect = 6e-09 Identities = 88/106 (83%) Strand = Plus / Plus Query: 306 tcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaatgttccga 365 ||||||||||| || | || | |||||||||||| || |||||||| || ||||| || Sbjct: 79203 tcacgggggaagattctgaggagagtccatgccaggtcgagtgactggaagatgtttcgg 79262 Query: 366 gtatcatatgctccttgtgctacaaatttcctctcgaacttgtcca 411 |||||||| ||||| || || ||||| |||||||||||||| |||| Sbjct: 79263 gtatcataagctccctgagccacaaacttcctctcgaacttatcca 79308
>gb|AY090334.1| Arabidopsis thaliana AT4g38510/F20M13_70 mRNA, complete cds Length = 1167 Score = 69.9 bits (35), Expect = 6e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 329 agtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctac 388 |||||||||||| || |||||||| || ||||| || |||||||| ||||| || || || Sbjct: 1080 agtccatgccaggtcgagtgactggaagatgtttcgggtatcataagctccctgagccac 1021 Query: 389 aaatttcctctcgaacttgtcca 411 ||| |||||||||||||| |||| Sbjct: 1020 aaacttcctctcgaacttatcca 998
>gb|AY059167.1| Arabidopsis thaliana AT4g38510/F20M13_70 mRNA, complete cds Length = 1464 Score = 69.9 bits (35), Expect = 6e-09 Identities = 88/106 (83%) Strand = Plus / Minus Query: 306 tcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaatgttccga 365 ||||||||||| || | || | |||||||||||| || |||||||| || ||||| || Sbjct: 1400 tcacgggggaagattctgaggagagtccatgccaggtcgagtgactggaagatgtttcgg 1341 Query: 366 gtatcatatgctccttgtgctacaaatttcctctcgaacttgtcca 411 |||||||| ||||| || || ||||| |||||||||||||| |||| Sbjct: 1340 gtatcataagctccctgagccacaaacttcctctcgaacttatcca 1295
>dbj|AK222158.1| Arabidopsis thaliana mRNA for vacuolar-type H+-ATPase subunit B2, complete cds, clone: RAFL23-16-B12 Length = 1201 Score = 69.9 bits (35), Expect = 6e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 329 agtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctac 388 |||||||||||| || |||||||| || ||||| || |||||||| ||||| || || || Sbjct: 786 agtccatgccaggtcgagtgactggaagatgtttcgggtatcataagctccctgagccac 727 Query: 389 aaatttcctctcgaacttgtcca 411 ||| |||||||||||||| |||| Sbjct: 726 aaacttcctctcgaacttatcca 704
>gb|AY045609.1| Arabidopsis thaliana AT4g38510/F20M13_70 mRNA, complete cds Length = 1829 Score = 69.9 bits (35), Expect = 6e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 329 agtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctac 388 |||||||||||| || |||||||| || ||||| || |||||||| ||||| || || || Sbjct: 1423 agtccatgccaggtcgagtgactggaagatgtttcgggtatcataagctccctgagccac 1364 Query: 389 aaatttcctctcgaacttgtcca 411 ||| |||||||||||||| |||| Sbjct: 1363 aaacttcctctcgaacttatcca 1341
>gb|AY039518.1| Arabidopsis thaliana AT4g38510/F20M13_70 mRNA, complete cds Length = 1862 Score = 69.9 bits (35), Expect = 6e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 329 agtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctac 388 |||||||||||| || |||||||| || ||||| || |||||||| ||||| || || || Sbjct: 1456 agtccatgccaggtcgagtgactggaagatgtttcgggtatcataagctccctgagccac 1397 Query: 389 aaatttcctctcgaacttgtcca 411 ||| |||||||||||||| |||| Sbjct: 1396 aaacttcctctcgaacttatcca 1374
>gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence Length = 107740 Score = 69.9 bits (35), Expect = 6e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 329 agtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctac 388 |||||||||||| || |||||||| || ||||| || |||||||| ||||| || || || Sbjct: 45343 agtccatgccaggtcgagtgactggaagatgtttcgggtatcataagctccctgagccac 45284 Query: 389 aaatttcctctcgaacttgtcca 411 ||| |||||||||||||| |||| Sbjct: 45283 aaacttcctctcgaacttatcca 45261
>emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, BAC clone F20M13 (ESSA project) Length = 91938 Score = 69.9 bits (35), Expect = 6e-09 Identities = 88/106 (83%) Strand = Plus / Plus Query: 306 tcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaatgttccga 365 ||||||||||| || | || | |||||||||||| || |||||||| || ||||| || Sbjct: 21102 tcacgggggaagattctgaggagagtccatgccaggtcgagtgactggaagatgtttcgg 21161 Query: 366 gtatcatatgctccttgtgctacaaatttcctctcgaacttgtcca 411 |||||||| ||||| || || ||||| |||||||||||||| |||| Sbjct: 21162 gtatcataagctccctgagccacaaacttcctctcgaacttatcca 21207
>emb|AJ417529.1|OSA417529 Oryza sativa partial mRNA for putative vacuolar ATPase B subunit (xd19 gene) Length = 494 Score = 65.9 bits (33), Expect = 1e-07 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand = Plus / Minus Query: 239 gatcaatgggtggcatctctgctgtagaattgatccaaggtcttcgcaggaatacggtgc 298 ||||| ||||| ||||||||||||||| | |||||||| ||||||||||| ||||| || Sbjct: 92 gatcagtgggtagcatctctgctgtagtactgatccaatgtcttcgcagggatacgatgg 33 Query: 299 atgaagttcacgggggaatat 319 | |||| ||||| |||||||| Sbjct: 32 a-gaagctcacgagggaatat 13
>gb|U07052.1|GHU07052 Gossypium hirsutum vacuolar H+-ATPase subunit B mRNA, complete cds Length = 2047 Score = 63.9 bits (32), Expect = 4e-07 Identities = 94/115 (81%) Strand = Plus / Minus Query: 301 gaagttcacgggggaatatacntagcaaagtccatgccagatcaagtgactgaaaaatgt 360 |||||||||| || ||||| | || | |||||| |||||||| |||||||| || |||| Sbjct: 1548 gaagttcacgaggaaatatgcggaggagagtccacgccagatcgagtgactggaagatgt 1489 Query: 361 tccgagtatcatatgctccttgtgctacaaatttcctctcgaacttgtccaggaa 415 | || || |||||||||||||| | |||| ||||||||| || || |||||||| Sbjct: 1488 tgcgggtgtcatatgctccttgggtaacaactttcctctcaaatttatccaggaa 1434
>dbj|AB024277.1| Citrus unshiu mRNA for vacuolar H+-ATPase B subunit, complete cds Length = 1899 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 330 gtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctaca 389 ||||||||||||||||| || || || || |||| || ||||| |||||||| || ||| Sbjct: 1435 gtccatgccagatcaagagattggaagatattcctagagtcataagctccttgagcaaca 1376 Query: 390 aatttcctctcgaacttgtccaggaattctaa 421 ||||| ||||| ||||| |||||||| ||||| Sbjct: 1375 aattttctctcaaacttatccaggaactctaa 1344
>ref|NM_101877.2| Arabidopsis thaliana ATP binding / hydrogen-transporting ATP synthase, rotational mechanism / hydrogen-transporting ATPase, rotational mechanism AT1G20260 transcript variant AT1G20260.1 mRNA, complete cds Length = 1815 Score = 58.0 bits (29), Expect = 2e-05 Identities = 101/124 (81%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||||||||||| | || || |||||||||||||| | |||| ||||| ||||| | Sbjct: 1583 gctgtagaattgatcaagtgttttggcaggaatacggtg-aagaagctcacgtgggaaga 1525 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 ||| |||| |||||||||| ||||| ||||| || ||||||| ||||| ||||| | Sbjct: 1524 tacggagcagtgtccatgccaagtcaagcgactggaagatgttccttgtatcgtatgcgc 1465 Query: 379 cttg 382 |||| Sbjct: 1464 cttg 1461
>ref|NM_202142.1| Arabidopsis thaliana ATP binding / hydrogen-exporting ATPase, phosphorylative mechanism / hydrogen-transporting ATP synthase, rotational mechanism /> AT1G20260 transcript variant AT1G20260.2 mRNA, complete cds Length = 1927 Score = 58.0 bits (29), Expect = 2e-05 Identities = 101/124 (81%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||||||||||| | || || |||||||||||||| | |||| ||||| ||||| | Sbjct: 1578 gctgtagaattgatcaagtgttttggcaggaatacggtg-aagaagctcacgtgggaaga 1520 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 ||| |||| |||||||||| ||||| ||||| || ||||||| ||||| ||||| | Sbjct: 1519 tacggagcagtgtccatgccaagtcaagcgactggaagatgttccttgtatcgtatgcgc 1460 Query: 379 cttg 382 |||| Sbjct: 1459 cttg 1456
>gb|BT000150.1| Arabidopsis thaliana Unknown protein (At1g20260) mRNA, complete cds Length = 1541 Score = 58.0 bits (29), Expect = 2e-05 Identities = 101/124 (81%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||||||||||| | || || |||||||||||||| | |||| ||||| ||||| | Sbjct: 1446 gctgtagaattgatcaagtgttttggcaggaatacggtg-aagaagctcacgtgggaaga 1388 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 ||| |||| |||||||||| ||||| ||||| || ||||||| ||||| ||||| | Sbjct: 1387 tacggagcagtgtccatgccaagtcaagcgactggaagatgttccttgtatcgtatgcgc 1328 Query: 379 cttg 382 |||| Sbjct: 1327 cttg 1324
>gb|AY062616.1| Arabidopsis thaliana Unknown protein (F14O10.13) mRNA, complete cds Length = 1816 Score = 58.0 bits (29), Expect = 2e-05 Identities = 101/124 (81%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||||||||||| | || || |||||||||||||| | |||| ||||| ||||| | Sbjct: 1584 gctgtagaattgatcaagtgttttggcaggaatacggtg-aagaagctcacgtgggaaga 1526 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 ||| |||| |||||||||| ||||| ||||| || ||||||| ||||| ||||| | Sbjct: 1525 tacggagcagtgtccatgccaagtcaagcgactggaagatgttccttgtatcgtatgcgc 1466 Query: 379 cttg 382 |||| Sbjct: 1465 cttg 1462
>emb|BX816938.1|CNS0AE2D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH77ZG02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 444 Score = 58.0 bits (29), Expect = 2e-05 Identities = 101/124 (81%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||||||||||| | || || |||||||||||||| | |||| ||||| ||||| | Sbjct: 149 gctgtagaattgatcaagtgttttggcaggaatacggtg-aagaagctcacgtgggaaga 91 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 ||| |||| |||||||||| ||||| ||||| || ||||||| ||||| ||||| | Sbjct: 90 tacggagcagtgtccatgccaagtcaagcgactggaagatgttccttgtatcgtatgcgc 31 Query: 379 cttg 382 |||| Sbjct: 30 cttg 27
>gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsis thaliana chromosome 1, complete sequence Length = 53889 Score = 58.0 bits (29), Expect = 2e-05 Identities = 101/124 (81%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||||||||||| | || || |||||||||||||| | |||| ||||| ||||| | Sbjct: 45354 gctgtagaattgatcaagtgttttggcaggaatacggtg-aagaagctcacgtgggaaga 45412 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 ||| |||| |||||||||| ||||| ||||| || ||||||| ||||| ||||| | Sbjct: 45413 tacggagcagtgtccatgccaagtcaagcgactggaagatgttccttgtatcgtatgcgc 45472 Query: 379 cttg 382 |||| Sbjct: 45473 cttg 45476
>dbj|AK176750.1| Arabidopsis thaliana mRNA for vacuolar-type H+-ATPase subunit B3 (VHA-B3), complete cds, clone: RAFL25-28-P20 Length = 1890 Score = 58.0 bits (29), Expect = 2e-05 Identities = 101/124 (81%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||||||||||| | || || |||||||||||||| | |||| ||||| ||||| | Sbjct: 1562 gctgtagaattgatcaagtgttttggcaggaatacggtg-aagaagctcacgtgggaaga 1504 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 ||| |||| |||||||||| ||||| ||||| || ||||||| ||||| ||||| | Sbjct: 1503 tacggagcagtgtccatgccaagtcaagcgactggaagatgttccttgtatcgtatgcgc 1444 Query: 379 cttg 382 |||| Sbjct: 1443 cttg 1440
>dbj|AK176641.1| Arabidopsis thaliana mRNA for vacuolar-type H+-ATPase subunit B3 (VHA-B3), complete cds, clone: RAFL25-17-J11 Length = 1890 Score = 58.0 bits (29), Expect = 2e-05 Identities = 101/124 (81%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||||||||||| | || || |||||||||||||| | |||| ||||| ||||| | Sbjct: 1562 gctgtagaattgatcaagtgttttggcaggaatacggtg-aagaagctcacgtgggaaga 1504 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 ||| |||| |||||||||| ||||| ||||| || ||||||| ||||| ||||| | Sbjct: 1503 tacggagcagtgtccatgccaagtcaagcgactggaagatgttccttgtatcgtatgcgc 1444 Query: 379 cttg 382 |||| Sbjct: 1443 cttg 1440
>dbj|AK176915.1| Arabidopsis thaliana mRNA for vacuolar-type H+-ATPase subunit B3 (VHA-B3), complete cds, clone: RAFL25-49-G23 Length = 1897 Score = 58.0 bits (29), Expect = 2e-05 Identities = 101/124 (81%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||||||||||| | || || |||||||||||||| | |||| ||||| ||||| | Sbjct: 1598 gctgtagaattgatcaagtgttttggcaggaatacggtg-aagaagctcacgtgggaaga 1540 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 ||| |||| |||||||||| ||||| ||||| || ||||||| ||||| ||||| | Sbjct: 1539 tacggagcagtgtccatgccaagtcaagcgactggaagatgttccttgtatcgtatgcgc 1480 Query: 379 cttg 382 |||| Sbjct: 1479 cttg 1476
>dbj|AK176408.1| Arabidopsis thaliana mRNA for vacuolar-type H+-ATPase subunit B3 (VHA-B3), complete cds, clone: RAFL24-13-A20 Length = 1897 Score = 58.0 bits (29), Expect = 2e-05 Identities = 101/124 (81%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||||||||||| | || || |||||||||||||| | |||| ||||| ||||| | Sbjct: 1598 gctgtagaattgatcaagtgttttggcaggaatacggtg-aagaagctcacgtgggaaga 1540 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 ||| |||| |||||||||| ||||| ||||| || ||||||| ||||| ||||| | Sbjct: 1539 tacggagcagtgtccatgccaagtcaagcgactggaagatgttccttgtatcgtatgcgc 1480 Query: 379 cttg 382 |||| Sbjct: 1479 cttg 1476
>dbj|AK175727.1| Arabidopsis thaliana mRNA for vacuolar-type H+-ATPase subunit B3 (VHA-B3), complete cds, clone: RAFL22-27-D19 Length = 1794 Score = 58.0 bits (29), Expect = 2e-05 Identities = 101/124 (81%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||||||||||| | || || |||||||||||||| | |||| ||||| ||||| | Sbjct: 1565 gctgtagaattgatcaagtgttttggcaggaatacggtg-aagaagctcacgtgggaaga 1507 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 ||| |||| |||||||||| ||||| ||||| || ||||||| ||||| ||||| | Sbjct: 1506 tacggagcagtgtccatgccaagtcaagcgactggaagatgttccttgtatcgtatgcgc 1447 Query: 379 cttg 382 |||| Sbjct: 1446 cttg 1443
>dbj|AK175169.1| Arabidopsis thaliana mRNA for vacuolar-type H+-ATPase subunit B3 (VHA-B3), complete cds, clone: RAFL21-58-M18 Length = 1872 Score = 58.0 bits (29), Expect = 2e-05 Identities = 101/124 (81%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||||||||||| | || || |||||||||||||| | |||| ||||| ||||| | Sbjct: 1571 gctgtagaattgatcaagtgttttggcaggaatacggtg-aagaagctcacgtgggaaga 1513 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 ||| |||| |||||||||| ||||| ||||| || ||||||| ||||| ||||| | Sbjct: 1512 tacggagcagtgtccatgccaagtcaagcgactggaagatgttccttgtatcgtatgcgc 1453 Query: 379 cttg 382 |||| Sbjct: 1452 cttg 1449
>emb|AJ417526.1|OSA417526 Oryza sativa partial mRNA for putative vacuolar H+-ATPase B subunit (xd14 gene) Length = 610 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 246 gggtggcatctctgctgtagaattgatccaaggtcttcgcaggaatacg 294 |||| ||||||||||||||| | |||||||| ||||||||||| ||||| Sbjct: 200 gggtagcatctctgctgtagtactgatccaatgtcttcgcagggatacg 152
>gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete sequence Length = 129667 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 348 gactgaaaaatgttccgagtatcatatgctccttgtgctacaaatttcctctcgaacttg 407 ||||| || ||||| || |||||||| ||||||||| | ||||| ||||||||||| ||| Sbjct: 37446 gactggaagatgttacgtgtatcataagctccttgtaccacaaacttcctctcgaatttg 37387 Query: 408 tcca 411 |||| Sbjct: 37386 tcca 37383
>emb|AJ718322.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT41-4-470, cultivar Bright Yellow 2 Length = 423 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 330 gtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctaca 389 |||||||| | |||||||||||| || ||||| || || ||||| |||||||| || ||| Sbjct: 339 gtccatgctaaatcaagtgactggaatatgttgcgtgtgtcataggctccttgagcgaca 280 Query: 390 aatttcctctcgaacttgtc 409 ||||||| ||| || ||||| Sbjct: 279 aatttccgctcaaatttgtc 260
>emb|AJ718296.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT4-44-450, cultivar Bright Yellow 2 Length = 409 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 330 gtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctaca 389 |||||||| | |||||||||||| || ||||| || || ||||| |||||||| || ||| Sbjct: 325 gtccatgctaaatcaagtgactggaatatgttgcgtgtgtcataggctccttgagcgaca 266 Query: 390 aatttcctctcgaacttgtc 409 ||||||| ||| || ||||| Sbjct: 265 aatttccgctcaaatttgtc 246
>ref|NM_191702.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1467 Score = 48.1 bits (24), Expect = 0.023 Identities = 57/68 (83%) Strand = Plus / Minus Query: 342 tcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctacaaatttcctctcg 401 ||||| ||||| || ||||| || || |||||||||||||||| || || |||| |||| Sbjct: 1367 tcaagcgactggaagatgttgcgtgtgtcatatgctccttgtgtcacgaacttccgctcg 1308 Query: 402 aacttgtc 409 |||||||| Sbjct: 1307 aacttgtc 1300
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.023 Identities = 57/68 (83%) Strand = Plus / Minus Query: 342 tcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctacaaatttcctctcg 401 ||||| ||||| || ||||| || || |||||||||||||||| || || |||| |||| Sbjct: 29535237 tcaagcgactggaagatgttgcgtgtgtcatatgctccttgtgtcacgaacttccgctcg 29535178 Query: 402 aacttgtc 409 |||||||| Sbjct: 29535177 aacttgtc 29535170
>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1142C05 Length = 151457 Score = 48.1 bits (24), Expect = 0.023 Identities = 57/68 (83%) Strand = Plus / Minus Query: 342 tcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctacaaatttcctctcg 401 ||||| ||||| || ||||| || || |||||||||||||||| || || |||| |||| Sbjct: 5057 tcaagcgactggaagatgttgcgtgtgtcatatgctccttgtgtcacgaacttccgctcg 4998 Query: 402 aacttgtc 409 |||||||| Sbjct: 4997 aacttgtc 4990
>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456F08 Length = 156850 Score = 48.1 bits (24), Expect = 0.023 Identities = 57/68 (83%) Strand = Plus / Minus Query: 342 tcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctacaaatttcctctcg 401 ||||| ||||| || ||||| || || |||||||||||||||| || || |||| |||| Sbjct: 101511 tcaagcgactggaagatgttgcgtgtgtcatatgctccttgtgtcacgaacttccgctcg 101452 Query: 402 aacttgtc 409 |||||||| Sbjct: 101451 aacttgtc 101444
>dbj|AK103899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150J04, full insert sequence Length = 1893 Score = 48.1 bits (24), Expect = 0.023 Identities = 57/68 (83%) Strand = Plus / Minus Query: 342 tcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctacaaatttcctctcg 401 ||||| ||||| || ||||| || || |||||||||||||||| || || |||| |||| Sbjct: 1464 tcaagcgactggaagatgttgcgtgtgtcatatgctccttgtgtcacgaacttccgctcg 1405 Query: 402 aacttgtc 409 |||||||| Sbjct: 1404 aacttgtc 1397
>emb|AJ718318.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT41-3-500, cultivar Bright Yellow 2 Length = 508 Score = 48.1 bits (24), Expect = 0.023 Identities = 120/151 (79%), Gaps = 1/151 (0%) Strand = Plus / Minus Query: 259 gctgtagaattgatccaaggtcttcgcaggaatacggtgcatgaagttcacgggggaata 318 ||||||| | ||||||| ||||||||| || |||||||| | |||| ||||| ||||| | Sbjct: 409 gctgtagtactgatccagggtcttcgcggggatacggtgaa-gaagctcacgagggaaaa 351 Query: 319 tacntagcaaagtccatgccagatcaagtgactgaaaaatgttccgagtatcatatgctc 378 | | || | ||||| || | |||||| || || |||||||| || || || || |||| Sbjct: 350 tccgaaggagtgtccaagctaaatcaagcgattggaaaatgttgcgggtgtcgtaggctc 291 Query: 379 cttgtgctacaaatttcctctcgaacttgtc 409 |||| || ||||| ||||||||||| ||||| Sbjct: 290 cttgggcaacaaacttcctctcgaatttgtc 260
>gb|AC108429.11| Mus musculus chromosome 7, clone RP23-161B5, complete sequence Length = 186903 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 catctctgctgtagaattgat 272 ||||||||||||||||||||| Sbjct: 15180 catctctgctgtagaattgat 15200
>gb|AC133950.4| Mus musculus BAC clone RP24-243C16 from chromosome 7, complete sequence Length = 176244 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 catctctgctgtagaattgat 272 ||||||||||||||||||||| Sbjct: 131789 catctctgctgtagaattgat 131809
>dbj|D50530.1| Acetabularia acetabulum clone pVBF V type adenosine triphosphatase B subunit mRNA, complete cds Length = 1666 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 387 acaaatttcctctcgaacttgtcca 411 |||||||| |||||||||||||||| Sbjct: 1359 acaaattttctctcgaacttgtcca 1335
>gb|AF220611.1|AF220611 Nicotiana tabacum vacuolar H+-ATPase B subunit mRNA, complete cds Length = 1910 Score = 42.1 bits (21), Expect = 1.4 Identities = 57/69 (82%) Strand = Plus / Minus Query: 341 atcaagtgactgaaaaatgttccgagtatcatatgctccttgtgctacaaatttcctctc 400 |||||| || || |||||||| || || || || |||||||| || ||||| |||||||| Sbjct: 1398 atcaagcgattggaaaatgttgcgggtgtcgtaggctccttgggcaacaaacttcctctc 1339 Query: 401 gaacttgtc 409 ||| ||||| Sbjct: 1338 gaatttgtc 1330
>emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chromosome 2, complete sequence Length = 226251 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 atgaacaaaaaggatcaatgg 247 ||||||||||||||||||||| Sbjct: 53809 atgaacaaaaaggatcaatgg 53789
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 ttattcaagctgctcttaatgaaa 213 |||| ||||||||||||||||||| Sbjct: 1113414 ttatacaagctgctcttaatgaaa 1113391
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 ttattcaagctgctcttaatgaaa 213 |||| ||||||||||||||||||| Sbjct: 1094094 ttatacaagctgctcttaatgaaa 1094071
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 ttattcaagctgctcttaatgaaa 213 |||| ||||||||||||||||||| Sbjct: 1093986 ttatacaagctgctcttaatgaaa 1093963
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 ttattcaagctgctcttaatgaaa 213 |||| ||||||||||||||||||| Sbjct: 1125625 ttatacaagctgctcttaatgaaa 1125602
>gb|AC157651.3| Mus musculus BAC clone RP24-363O21 from chromosome 6, complete sequence Length = 171141 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 gatcaagtgactgaaaaatg 359 |||||||||||||||||||| Sbjct: 59867 gatcaagtgactgaaaaatg 59848
>gb|AC122297.4| Mus musculus BAC clone RP23-266D1 from chromosome 6, complete sequence Length = 170005 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 caagtgactgaaaaatgttc 362 |||||||||||||||||||| Sbjct: 99417 caagtgactgaaaaatgttc 99398
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 ttattcaagctgctcttaatgaaa 213 |||| ||||||||||||||||||| Sbjct: 1094094 ttatacaagctgctcttaatgaaa 1094071 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,650,928 Number of Sequences: 3902068 Number of extensions: 2650928 Number of successful extensions: 40356 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 40218 Number of HSP's gapped (non-prelim): 131 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)