ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13k13 |
|---|---|
| Clone Library Name | barley_pub |
>ECR_AEDAE (P49880) Ecdysone receptor (Ecdysteroid receptor)| (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH) Length = 675 Score = 32.3 bits (72), Expect = 0.97 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +3 Query: 159 HIPQRYMKQQPHQMGHKKSETTHINDNGNGGGS 257 H Q QQ HQ H + + H N +G+GGGS Sbjct: 624 HGQQLTPNQQQHQQQHSQLQQVHANGSGSGGGS 656
>TONB_ECOLI (P02929) Protein tonB| Length = 239 Score = 31.6 bits (70), Expect = 1.7 Identities = 23/61 (37%), Positives = 26/61 (42%) Frame = -3 Query: 421 GAVVRGLLPEPFCSEAEATDASQGFRCPKVQRAPASLRPPGAISSEPLHVVLLAGEPPPL 242 GAVV GLL E +Q V PA L PP A+ P VV EP P+ Sbjct: 21 GAVVAGLLYTSVHQVIELPAPAQPISVTMV--TPADLEPPQAVQPPPEPVVEPEPEPEPI 78 Query: 241 P 239 P Sbjct: 79 P 79
>TONB_SALTY (P25945) Protein tonB| Length = 242 Score = 31.2 bits (69), Expect = 2.2 Identities = 25/69 (36%), Positives = 29/69 (42%) Frame = -3 Query: 442 LLPPDQEGAVVRGLLPEPFCSEAEATDASQGFRCPKVQRAPASLRPPGAISSEPLHVVLL 263 LL GAVV GLL E +Q V +PA L PP A+ P VV Sbjct: 14 LLSVGIHGAVVAGLLYTSVHQVIELPAPAQPITVTMV--SPADLEPPQAVQPPPEPVVEP 71 Query: 262 AGEPPPLPL 236 EP P P+ Sbjct: 72 EPEPEPEPI 80
>UL24_HHV6U (Q06092) Protein U49| Length = 252 Score = 30.4 bits (67), Expect = 3.7 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = -1 Query: 513 ELSWDVMEPICFFVTSTYFMAGYAFFLRTKREPSFEGFFQSRFAVKQKRLMQARDFDVRR 334 E+SW+V+ ICFF + + F + SF F + FA Q +Q+ + Sbjct: 133 EVSWNVVPVICFFRQWGLKLDFFKKFSGKTKRLSF-SFIRDLFARSQDGAVQSL-LSIPN 190 Query: 333 YSELRRAC 310 Y+ RRAC Sbjct: 191 YTNFRRAC 198
>UL24_HHV6G (P52535) Protein U49| Length = 252 Score = 30.4 bits (67), Expect = 3.7 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = -1 Query: 513 ELSWDVMEPICFFVTSTYFMAGYAFFLRTKREPSFEGFFQSRFAVKQKRLMQARDFDVRR 334 E+SW+V+ ICFF + + F + SF F + FA Q +Q+ + Sbjct: 133 EVSWNVVPVICFFRQWGLKLDFFKKFSGKTKRLSF-SFIRDLFARSQDGAVQSL-LSIPN 190 Query: 333 YSELRRAC 310 Y+ RRAC Sbjct: 191 YTNFRRAC 198
>YG2K_YEAST (P53253) Protein YGR089W| Length = 936 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 68 SDASIHPSGQDTAISSLKSESDLVNEYASHPHSTT 172 S+ +IHPS Q+ + L S S+++N AS+P T Sbjct: 328 SNQTIHPSQQNNSPVPLSSHSNILNPAASYPTDAT 362
>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1287 Score = 30.0 bits (66), Expect = 4.8 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Frame = -3 Query: 382 SEAEATDASQGFRCPKVQRAPASLRP--PGAISSEPLHVVLLAGEPPPLP 239 +EA TDA Q C K++ A L P + PL ++ G PPP P Sbjct: 844 AEAPLTDACQQEMCSKLRGAQGPLGPDMESPLPPPPLSLLRPGGAPPPPP 893
>GGA2_HUMAN (Q9UJY4) ADP-ribosylation factor-binding protein GGA2| (Golgi-localized, gamma ear-containing, ARF-binding protein 2) (Gamma-adaptin-related protein 2) (VHS domain and ear domain of gamma-adaptin) (Vear) Length = 613 Score = 30.0 bits (66), Expect = 4.8 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = -3 Query: 433 PDQEGAVVRGLLPEPFC----SEAEATDASQGFRCPKVQRAPASLRPPGAISSEPLH--- 275 P Q G VV LL + S+A T G C + +R P+S PG P Sbjct: 358 PAQMGTVVPSLLHQDLAALGISDAPVTGMVSGQNCCEEKRNPSSSTLPGGGVQNPSADRN 417 Query: 274 -VVLLAGEPPPLPLS 233 + LL+ +P P PL+ Sbjct: 418 LLDLLSPQPAPCPLN 432
>RAD52_ASHGO (Q756F4) DNA repair and recombination protein RAD52| Length = 435 Score = 29.6 bits (65), Expect = 6.3 Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Frame = -3 Query: 436 PPD-QEGAVVRGLLPEPFCSEAEA-TDASQGFRCPKVQRAPASLRP-PGAISSEPLHVVL 266 PPD EG + R S A TD S+G PK + AP P PGA+ E H Sbjct: 158 PPDFDEGNLFRATDENNELSRANTVTDHSEG-PAPKKRNAPLPPAPRPGAMRPEAAHAAP 216 Query: 265 LAGEPP 248 EPP Sbjct: 217 APSEPP 222
>PPCKM_CHICK (P21642) Phosphoenolpyruvate carboxykinase [GTP], mitochondrial| precursor (EC 4.1.1.32) (Phosphoenolpyruvate carboxylase) (PEPCK-M) Length = 640 Score = 29.6 bits (65), Expect = 6.3 Identities = 22/84 (26%), Positives = 36/84 (42%) Frame = -3 Query: 472 DVDLLHGRLCLLPPDQEGAVVRGLLPEPFCSEAEATDASQGFRCPKVQRAPASLRPPGAI 293 DV + + L+ P+Q AV P P + + P +A R PG + Sbjct: 102 DVARVESKTVLVTPEQSDAV-----PPP---PPSGSPQLGNWMSPNAFQAAVQERFPGCM 153 Query: 292 SSEPLHVVLLAGEPPPLPLSLMCV 221 + PL+V+ + PP PL+ + V Sbjct: 154 AGRPLYVIPFSMGPPTSPLAKLGV 177
>PITX1_DROME (O18400) Pituitary homeobox 1 homolog (D-PTX1)| Length = 509 Score = 29.3 bits (64), Expect = 8.2 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Frame = +2 Query: 14 GLFTAGIYTLTSLA*PHDSDASIHPSGQDTAISSLKSES--------DLVNEYASHPHST 169 G T+G L S HDS +S+ S +++ + S S DLV Y+ HPH T Sbjct: 102 GSSTSGTEHLHSHHSLHDSSSSVSISPAISSLMPISSLSHLHHSAGQDLVGGYSQHPHHT 161 Query: 170 TV 175 V Sbjct: 162 VV 163
>FMT_LEIXX (Q6AF77) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 302 Score = 29.3 bits (64), Expect = 8.2 Identities = 19/63 (30%), Positives = 30/63 (47%) Frame = -3 Query: 436 PPDQEGAVVRGLLPEPFCSEAEATDASQGFRCPKVQRAPASLRPPGAISSEPLHVVLLAG 257 P D+ A RG+ PEP A A + F+ V+ A + PPGA+ ++ ++ G Sbjct: 213 PADEVYARFRGVTPEP---GAWALLDGERFKIHAVRPTAAGVLPPGAVVADGKRILAGTG 269 Query: 256 EPP 248 P Sbjct: 270 SRP 272 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,261,791 Number of Sequences: 219361 Number of extensions: 1719699 Number of successful extensions: 5146 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4897 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5136 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
