Clone Information

BLAST Search Result

Clone Name	rbags13k08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; ...	38	0.034
2	GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; ...	37	0.077
3	POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	0.12
4	GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; ...	36	0.13
5	GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; ...	36	0.13
6	GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	0.21
7	GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; ...	35	0.22
8	GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; ...	35	0.29
9	POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	0.32
10	GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	34	0.38
11	POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	34	0.38
12	GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15; ...	34	0.38
13	DNAJ_CLOAB (P30725) Chaperone protein dnaJ	33	0.65
14	POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	0.69
15	POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	0.69
16	HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p...	28	0.78
17	GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	27	0.95
18	AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-int...	28	0.99
19	GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	1.2
20	GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	32	1.4
21	POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	32	1.4
22	POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	27	1.5
23	POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	1.5
24	GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	1.6
25	AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-int...	27	1.6
26	UN13C_MOUSE (Q8K0T7) Unc-13 homolog C (Munc13-3) (Fragment)	32	1.9
27	GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	26	2.0
28	GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	27	2.6
29	GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-...	31	3.2
30	GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-...	31	3.2
31	CP3AS_BOVIN (P79102) Cytochrome P450 3A28 (EC 1.14.14.1) (CYPIII...	31	4.2
32	GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	31	4.2
33	POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	31	4.2
34	GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosp...	31	4.2
35	GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; ...	25	4.3
36	GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15...	30	5.5
37	GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15...	30	5.5
38	GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15...	30	5.5
39	TRFE_ONCKI (P79815) Serotransferrin precursor	30	5.5
40	POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...	30	5.5
41	GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosp...	30	5.5
42	POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	5.5
43	CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (...	25	6.1
44	CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP)...	25	6.1
45	CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP)...	25	6.1
46	BIK1_YEAST (P11709) Nuclear fusion protein BIK1	30	7.2
47	GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	30	7.2
48	POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	7.2
49	NET1_HUMAN (O95631) Netrin-1 precursor	30	9.4
50	MTH3_DROME (Q9V818) Probable G-protein coupled receptor Mth-like...	30	9.4
51	RAG1_HUMAN (P15918) V(D)J recombination-activating protein 1 (RA...	30	9.4
52	BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain ...	30	9.4
53	PAR1_XENLA (P47749) Proteinase-activated receptor 1 precursor (P...	30	9.4
54	MTH4_DROME (Q9V817) Probable G-protein coupled receptor Mth-like...	30	9.4
55	POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	9.4

>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 520

 Score = 37.7 bits (86), Expect = 0.034
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 312 AKIVVE--RGTTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 184
           AK++ E  +    QN+ Q GG   + R  P+C  CG  GH++ QC
Sbjct: 369 AKVMAEMMQNLQSQNMVQQGGGRGRPRPPPKCYNCGKFGHMQRQC 413



 Score = 26.2 bits (56), Expect(2) = 9.0
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESF 163
           G  ++Q  EPR   C KCG  GH+   C RG  +F
Sbjct: 407 GHMQRQCPEPRKIKCLKCGKPGHLAKDC-RGQVNF 440



 Score = 21.9 bits (45), Expect(2) = 9.0
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = -3

Query: 463 KEKIDMQQNINGKTVLKNSMIVESRKRDRGRPTNARCRPGYEVSQPRTKFCKNCRGKGHN 284
           K   +M QN+  + +++           RGRP            +P  K C NC   GH 
Sbjct: 370 KVMAEMMQNLQSQNMVQQG-------GGRGRP------------RPPPK-CYNCGKFGHM 409

Query: 283 SAKCP 269
             +CP
Sbjct: 410 QRQCP 414

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>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 513

 Score = 36.6 bits (83), Expect = 0.077
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -1

Query: 312 AKIVVERGTTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQCGRGWE-SFFR*RGVYHF 136
           AK++VE  +  QN+ Q G   K  R   +C  CG  GH++ +C    +   F+   + H 
Sbjct: 363 AKLMVEMMSNGQNMVQVGPQKKGPRGPLKCFNCGKFGHMQRECKAPRQIKCFKCGKIGHM 422

Query: 135 *KECRD 118
            K+C++
Sbjct: 423 AKDCKN 428

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>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 28.5 bits (62), Expect(2) = 0.12
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 157
           G + +Q + PR   C KCG  GHI T C      F R
Sbjct: 397 GHSARQCRAPRRQGCWKCGKPGHIMTNCPDRQAGFLR 433



 Score = 26.2 bits (56), Expect(2) = 0.12
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 415 KNSMIVESRKRDRGRPTNARCRPGYEVSQPRTKFCKNCRGKGHNSAKCPA 266
           K  ++ E+ K   G P      P     Q RT  C NC  +GH++ +C A
Sbjct: 360 KARLMAEALKEAMGPPPI----PFAAAQQRRTIKCWNCGKEGHSARQCRA 405

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>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 519

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -1

Query: 312 AKIVVERGTTPQN---VQQTGGANKKQRKEPRCDKCGLTGHIRTQC 184
           AK++ E   T QN   VQQ  G  K+QR   RC  CG  GH++ QC
Sbjct: 369 AKVMAEMMQTMQNQNMVQQ--GGPKRQRPPLRCYNCGKFGHMQRQC 412

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>GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; Major core|
           protein p24; Nucleic acid-binding protein p10]
          Length = 450

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = -1

Query: 342 MK*VNQELSSAKIVVERGTTPQ--NVQQTGGANKKQRKEPRCDKCGLTGHIRTQCGRG 175
           M+ + + L+  ++V  +G+ P   N ++ G   ++ R+  +C+KCG  GH+  +C +G
Sbjct: 355 MQLLAEALTKVQVVQSKGSGPVCFNCKKPGHLARQCREVKKCNKCGKPGHLAAKCWQG 412

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>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 27.7 bits (60), Expect(2) = 0.21
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQC 184
           G + +Q + PR   C KCG  GHI T C
Sbjct: 397 GHSARQCRAPRRQGCWKCGKPGHIMTNC 424



 Score = 26.2 bits (56), Expect(2) = 0.21
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 415 KNSMIVESRKRDRGRPTNARCRPGYEVSQPRTKFCKNCRGKGHNSAKCPA 266
           K  ++ E+ K   G P      P     Q RT  C NC  +GH++ +C A
Sbjct: 360 KARLMAEALKEAMGPPPI----PFAAAQQRRTIKCWNCGKEGHSARQCRA 405

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>GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; Major core|
           protein p24; Nucleic acid-binding protein p10]
          Length = 450

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -1

Query: 342 MK*VNQELSSAKIVVERGTTPQ--NVQQTGGANKKQRKEPRCDKCGLTGHIRTQCGRG 175
           M+ + + L+  ++V  +G+ P   N ++ G   ++ R   +C+KCG  GH+  +C +G
Sbjct: 355 MQLLAEALTKVQVVQSKGSGPVCFNCKKPGHLARQCRDVKKCNKCGKPGHLAAKCWQG 412

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>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 521

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 312 AKIVVE--RGTTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 184
           AK++ E  +    QN+ Q GG   + R   +C  CG  GH++ QC
Sbjct: 373 AKVMAEMMQNMQSQNMMQQGGQRGRPRPPVKCYNCGKFGHMQRQC 417



 Score = 26.2 bits (56), Expect(2) = 5.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESF 163
           G  ++Q  EPR   C KCG  GH+   C RG  +F
Sbjct: 411 GHMQRQCPEPRKMRCLKCGKPGHLAKDC-RGQVNF 444



 Score = 22.7 bits (47), Expect(2) = 5.5
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = -3

Query: 463 KEKIDMQQNINGKTVLKNSMIVESRKRDRGRPTNARCRPGYEVSQPRTKFCKNCRGKGHN 284
           K   +M QN+  + +++           RGRP            +P  K C NC   GH 
Sbjct: 374 KVMAEMMQNMQSQNMMQQG-------GQRGRP------------RPPVK-CYNCGKFGHM 413

Query: 283 SAKCP 269
             +CP
Sbjct: 414 QRQCP 418

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>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 28.1 bits (61), Expect(2) = 0.32
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 157
           G + +Q + PR   C KCG  GHI  +C      F R
Sbjct: 397 GHSARQCRAPRRQGCWKCGKAGHIMAKCPERQAGFLR 433



 Score = 25.0 bits (53), Expect(2) = 0.32
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 349 PGYEVSQPRTKFCKNCRGKGHNSAKCPA 266
           P     Q RT  C NC  +GH++ +C A
Sbjct: 378 PFAAAQQRRTIKCWNCGKEGHSARQCRA 405

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>GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 501

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 288 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 184
           T P N+    G  + QRK  +C  CG  GHI   C
Sbjct: 372 TNPANIMMQRGNFRNQRKTVKCFNCGKEGHIAKNC 406

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>POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1436

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 288 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 184
           T P N+    G  + QRK  +C  CG  GHI   C
Sbjct: 372 TNPANIMMQRGNFRNQRKTVKCFNCGKEGHIAKNC 406

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>GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15; Major core|
           protein p24; Nucleic acid-binding protein p10]
          Length = 450

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = -1

Query: 342 MK*VNQELSSAKIVVERGTTPQ--NVQQTGGANKKQRKEPRCDKCGLTGHIRTQCGRG 175
           M+ + + L+  ++V  +G  P   N ++ G   ++ R   +C+KCG  GH+  +C +G
Sbjct: 355 MQLLAEALTKVQVVQSKGPGPVCFNCKRPGHLARQCRDVKKCNKCGKPGHLAAKCWQG 412

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>DNAJ_CLOAB (P30725) Chaperone protein dnaJ|
          Length = 374

 Score = 33.5 bits (75), Expect = 0.65
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 288 TTPQNVQQTGGANKKQRKEPR-CDKCGLTGHIRTQ 187
           T  +N +  GG   K+   P+ CDKCG TG IR Q
Sbjct: 145 TRSENCETCGGTGAKKGTSPKTCDKCGGTGTIRVQ 179

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>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 28.5 bits (62), Expect(2) = 0.69
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 157
           G + +Q + PR   C KCG  GHI T C      F R
Sbjct: 397 GHSARQCRAPRRQGCWKCGKPGHIMTNCPDRQAGFLR 433



 Score = 23.5 bits (49), Expect(2) = 0.69
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 343 YEVSQPRTKF-CKNCRGKGHNSAKCPA 266
           +  +Q R  F C NC  +GH++ +C A
Sbjct: 379 FAAAQQRKAFKCWNCGKEGHSARQCRA 405

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>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 27.7 bits (60), Expect(2) = 0.69
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 157
           G + +Q + PR   C KCG +GH+   C      F R
Sbjct: 397 GHSARQCRAPRRQGCWKCGKSGHVMANCPERQAGFLR 433



 Score = 24.3 bits (51), Expect(2) = 0.69
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 349 PGYEVSQPRTKFCKNCRGKGHNSAKCPA 266
           P     Q RT  C NC   GH++ +C A
Sbjct: 378 PFAAAQQRRTIKCWNCGKDGHSARQCRA 405

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>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)|
          Length = 271

 Score = 28.1 bits (61), Expect(2) = 1.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -3

Query: 340 EVSQPRTKF---CKNCRGKGHNSAKCP 269
           +V +PRT+    C+NC  +GH + +CP
Sbjct: 6   DVKRPRTESSTSCRNCGKEGHYARECP 32



 Score = 27.7 bits (60), Expect(2) = 0.78
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = -3

Query: 394 SRKRDRGRPTNARCRPGYEVSQPRTKFCKNCRGKGHNSAKCPANGGGKQEAEEGT 230
           S+   RG     R R G +      + C  C   GH S  CP   GG   A + T
Sbjct: 115 SQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRT 169



 Score = 25.8 bits (55), Expect(2) = 2.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 313 CKNCRGKGHNSAKCPANGGGKQ 248
           C  C  +GH S  CP++ GG +
Sbjct: 99  CYKCGQEGHLSRDCPSSQGGSR 120



 Score = 25.4 bits (54), Expect(2) = 2.1
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 346 GYEVSQPRTKFCKNCRGKGHNSAKCPANGGG 254
           GY  +  RT  C  C   GH S  CP   GG
Sbjct: 161 GYSGAGDRT--CYKCGDAGHISRDCPNGQGG 189



 Score = 25.0 bits (53), Expect(2) = 2.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 225 CDKCGLTGHIRTQCGRGWESFFR*RG 148
           C KCG  GHI  +C     S+   RG
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRG 249



 Score = 24.6 bits (52), Expect(2) = 2.1
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -1

Query: 258 GANKKQRKEPRCDKCGLTGHIRTQCGRG 175
           GA      +  C KCG  GHI   C  G
Sbjct: 131 GAQGGYSGDRTCYKCGDAGHISRDCPNG 158



 Score = 24.3 bits (51), Expect(2) = 0.78
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = -1

Query: 228 RCDKCGLTGHIRTQC------GRGWESFFR*RGVYHF*KEC 124
           +C KCG +GH+  +C      G G  + ++     H  +EC
Sbjct: 197 KCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISREC 237



 Score = 22.7 bits (47), Expect(2) = 1.7
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 252 NKKQRKEPRCDKCGLTGHIRTQC 184
           +K   +   C +CG  GH+  +C
Sbjct: 36  SKGDERSTTCFRCGEEGHMSREC 58

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>GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 26.6 bits (57), Expect(2) = 0.95
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQC 184
           G + +Q + PR   C KCG  GHI  +C
Sbjct: 397 GHSARQCRAPRRQGCWKCGKAGHIMAKC 424



 Score = 25.0 bits (53), Expect(2) = 0.95
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 349 PGYEVSQPRTKFCKNCRGKGHNSAKCPA 266
           P     Q RT  C NC  +GH++ +C A
Sbjct: 378 PFAAAQQRRTIKCWNCGKEGHSARQCRA 405

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>AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-interacting RING|
           finger protein 2)
          Length = 344

 Score = 28.5 bits (62), Expect(2) = 0.99
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 237 KEPRCDKCGLTGHIRTQCGRGWE 169
           K  +C KC   GH R+QC   W+
Sbjct: 97  KAIQCSKCDEVGHYRSQCPHKWK 119



 Score = 23.1 bits (48), Expect(2) = 0.99
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 313 CKNCRGKGHNSAKCP 269
           C NC  +GH    CP
Sbjct: 63  CNNCSQRGHLKKDCP 77

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>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 27.7 bits (60), Expect(2) = 1.2
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQC 184
           G + +Q + PR   C KCG  GHI T C
Sbjct: 397 GHSARQCRAPRRQGCWKCGKPGHIMTNC 424



 Score = 23.5 bits (49), Expect(2) = 1.2
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 343 YEVSQPRTKF-CKNCRGKGHNSAKCPA 266
           +  +Q R  F C NC  +GH++ +C A
Sbjct: 379 FAAAQQRKAFKCWNCGKEGHSARQCRA 405

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>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 503

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 288 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 184
           T P  +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNPATIMMQRGNFRNQRKNVKCFNCGKEGHIARNC 404

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>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1438

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 288 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 184
           T P  +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNPATIMMQRGNFRNQRKNVKCFNCGKEGHIARNC 404

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>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 27.3 bits (59), Expect(2) = 1.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 157
           G + +Q + PR   C KCG +GHI   C      F R
Sbjct: 396 GHSARQCRAPRRQGCWKCGKSGHIMANCPDRQAGFLR 432



 Score = 23.5 bits (49), Expect(2) = 1.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 349 PGYEVSQPRTKFCKNCRGKGHNSAKCPA 266
           P     Q R   C NC  +GH++ +C A
Sbjct: 377 PFAAAQQKRAIKCWNCGKEGHSARQCRA 404

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>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 27.7 bits (60), Expect(2) = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQC 184
           G + KQ + PR   C KCG +GHI   C
Sbjct: 397 GHSAKQCRAPRRQGCWKCGKSGHIMANC 424



 Score = 23.1 bits (48), Expect(2) = 1.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 349 PGYEVSQPRTKFCKNCRGKGHNSAKCPA 266
           P     Q R   C NC  +GH++ +C A
Sbjct: 378 PFAAAQQRRAIRCWNCGKEGHSAKQCRA 405

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>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 27.7 bits (60), Expect(2) = 1.6
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQC 184
           G + KQ + PR   C KCG +GHI   C
Sbjct: 397 GHSAKQCRAPRRQGCWKCGKSGHIMANC 424



 Score = 23.1 bits (48), Expect(2) = 1.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 349 PGYEVSQPRTKFCKNCRGKGHNSAKCPA 266
           P     Q R   C NC  +GH++ +C A
Sbjct: 378 PFAAAQQRRAIRCWNCGKEGHSAKQCRA 405

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>AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-interacting RING|
           finger protein 1)
          Length = 360

 Score = 27.3 bits (59), Expect(2) = 1.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 225 CDKCGLTGHIRTQCGRGWESFF 160
           C  C   GH ++QC   W+  F
Sbjct: 114 CTNCNANGHYKSQCPHKWKKVF 135



 Score = 23.5 bits (49), Expect(2) = 1.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 313 CKNCRGKGHNSAKCP 269
           C NC  +GH    CP
Sbjct: 76  CNNCSQRGHLKRNCP 90

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>UN13C_MOUSE (Q8K0T7) Unc-13 homolog C (Munc13-3) (Fragment)|
          Length = 1430

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 595 DIVRMGDSNPEAFEFAMSKLSDAMVGLKEKANGSDGKCLEDIL-DKEKIDMQQNIN 431
           D V +  S  E F++  + LSD  + L  K     GKC  D+  D E  D+ Q+ N
Sbjct: 660 DDVGLDSSTQEPFDYDTNSLSDQQLDLSSKDLDDLGKCHSDLQDDSESYDLTQDDN 715

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>GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 26.2 bits (56), Expect(2) = 2.0
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQC 184
           G + +Q + PR   C KCG +GH+   C
Sbjct: 397 GHSARQCRAPRRQGCWKCGKSGHVMANC 424



 Score = 24.3 bits (51), Expect(2) = 2.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 349 PGYEVSQPRTKFCKNCRGKGHNSAKCPA 266
           P     Q RT  C NC   GH++ +C A
Sbjct: 378 PFAAAQQRRTIKCWNCGKDGHSARQCRA 405

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>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 519

 Score = 26.6 bits (57), Expect(2) = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQC 184
           G + +Q + PR   C KCG +GHI   C
Sbjct: 396 GHSARQCRAPRRQGCWKCGKSGHIMANC 423



 Score = 23.5 bits (49), Expect(2) = 2.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 349 PGYEVSQPRTKFCKNCRGKGHNSAKCPA 266
           P     Q R   C NC  +GH++ +C A
Sbjct: 377 PFAAAQQKRAIKCWNCGKEGHSARQCRA 404

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>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline|
           helicase 2)
          Length = 974

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 313 CKNCRGKGHNSAKCP 269
           C NC+G+GH SA+CP
Sbjct: 455 CFNCKGEGHRSAECP 469

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>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline|
           helicase 1)
          Length = 763

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 313 CKNCRGKGHNSAKCP 269
           C NC+G+GH SA+CP
Sbjct: 244 CFNCKGEGHRSAECP 258

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>CP3AS_BOVIN (P79102) Cytochrome P450 3A28 (EC 1.14.14.1) (CYPIIIA28)|
          Length = 507

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 162 RMIPIHGRIES*CVLSSRTYHTWVPSSASCLPPPFAGH-FAELCPFPRQF 308
           RM PI GR+E  C      +   +P   + L P F  H   EL P P +F
Sbjct: 365 RMFPIAGRLERVCKKDVEIHGVTIPKGTTVLVPLFVLHNNPELWPEPEEF 414

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>GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 288 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 184
           T P  +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNPATIMIQKGNFRNQRKTVKCFNCGKEGHIAKNC 404

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>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 288 TTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 184
           T P  +    G  + QRK  +C  CG  GHI   C
Sbjct: 370 TNPATIMIQKGNFRNQRKTVKCFNCGKEGHIAKNC 404

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>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 273 VQQT--GGANKKQRKEPRCDKCGLTGHIRTQC 184
           V+QT  GG   +  K P C  CG TGHI+  C
Sbjct: 508 VKQTYGGGKGGQGSKGPVCFSCGKTGHIKRDC 539

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>GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 510

 Score = 25.4 bits (54), Expect(2) = 4.3
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQC 184
           G   KQ K PR   C KCG  GH   +C
Sbjct: 400 GHTAKQCKAPRRQGCWKCGKPGHQMAKC 427



 Score = 23.9 bits (50), Expect(2) = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 325 RTKFCKNCRGKGHNSAKCPA 266
           RT  C NC  +GH + +C A
Sbjct: 389 RTVKCWNCGKEGHTAKQCKA 408

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>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 225 CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRDI 115
           C  CG  GH+ +QC R  +  F+ +   HF K+CR +
Sbjct: 383 CYNCGKPGHLSSQC-RAPKVCFKCKQPGHFSKQCRSV 418

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>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 225 CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRDI 115
           C  CG  GH+ +QC R  +  F+ +   HF K+CR +
Sbjct: 383 CYNCGKPGHLSSQC-RAPKVCFKCKQPGHFSKQCRSV 418

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>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 225 CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRDI 115
           C  CG  GH+ +QC R  +  F+ +   HF K+CR +
Sbjct: 383 CYNCGKPGHLSSQC-RAPKVCFKCKQPGHFSKQCRSV 418

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>TRFE_ONCKI (P79815) Serotransferrin precursor|
          Length = 687

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -3

Query: 355 CRPGYEVSQPRTKFCKNCRGKGH----NSAKCPAN 263
           C PG+EV  P   FC  C+G G     + +KC A+
Sbjct: 485 CAPGFEVDSP---FCAQCKGSGKSVGGDGSKCKAS 516

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>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT|
           1-94 [Includes: Protease (EC 3.4.23.-); Reverse
           transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = -3

Query: 409 SMIVESRKRDRGRPTNARCRPGYEV-----SQPRTKFCKNCRGKGHNSAKCPANGGGKQE 245
           ++I E R R   R +N   R G        S+ R + C NC   GH    CP    GK E
Sbjct: 195 ALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGE 254

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>GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 273 VQQT--GGANKKQRKEPRCDKCGLTGHIRTQC 184
           V+QT  GG   +  + P C  CG TGHIR  C
Sbjct: 508 VKQTYGGGKGGQGAEGPVCFSCGKTGHIRKDC 539

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>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1464

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR*R 151
           G   +Q + PR   C KCG TGHI ++C      F R R
Sbjct: 396 GHTARQCRAPRRQGCWKCGKTGHIMSKCPERQAGFLRVR 434

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>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 25.0 bits (53), Expect(2) = 6.1
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -1

Query: 225 CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRDIISMS**CC*RLGVSNFLCK 58
           C +CG +GH+   C    ++ +      H  K+C++       CC   G    L +
Sbjct: 54  CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 109



 Score = 23.9 bits (50), Expect(2) = 6.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 313 CKNCRGKGHNSAKCPANGG 257
           C  C   GH + +CP  GG
Sbjct: 6   CFKCGRSGHWARECPTGGG 24

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>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 25.0 bits (53), Expect(2) = 6.1
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -1

Query: 225 CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRDIISMS**CC*RLGVSNFLCK 58
           C +CG +GH+   C    ++ +      H  K+C++       CC   G    L +
Sbjct: 54  CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 109



 Score = 23.9 bits (50), Expect(2) = 6.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 313 CKNCRGKGHNSAKCPANGG 257
           C  C   GH + +CP  GG
Sbjct: 6   CFKCGRSGHWARECPTGGG 24

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>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 25.0 bits (53), Expect(2) = 6.1
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -1

Query: 225 CDKCGLTGHIRTQCGRGWESFFR*RGVYHF*KECRDIISMS**CC*RLGVSNFLCK 58
           C +CG +GH+   C    ++ +      H  K+C++       CC   G    L +
Sbjct: 54  CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 109



 Score = 23.9 bits (50), Expect(2) = 6.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 313 CKNCRGKGHNSAKCPANGG 257
           C  C   GH + +CP  GG
Sbjct: 6   CFKCGRSGHWARECPTGGG 24

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>BIK1_YEAST (P11709) Nuclear fusion protein BIK1|
          Length = 440

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 325 RTKFCKNCRGKGHNSAKCPANGGGKQE 245
           R ++C++C   GHN+A+CP +    Q+
Sbjct: 412 RQQWCEHCDTMGHNTAECPHHNPDNQQ 438

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>GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 333 VNQELSSAKIVVERGTTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 184
           ++Q  +SA I+++RG             + QRK  +C  CG  GHI   C
Sbjct: 366 MSQVTNSATIMMQRGNF-----------RNQRKTVKCFNCGKEGHIAKNC 404

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>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 333 VNQELSSAKIVVERGTTPQNVQQTGGANKKQRKEPRCDKCGLTGHIRTQC 184
           ++Q  +SA I+++RG             + QRK  +C  CG  GHI   C
Sbjct: 366 MSQVTNSATIMMQRGNF-----------RNQRKTVKCFNCGKEGHIAKNC 404

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>NET1_HUMAN (O95631) Netrin-1 precursor|
          Length = 604

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = -3

Query: 580 GDSNPEAFEFAMSK----LSDAMVGLKEKANGSDGKCLEDILDKEKIDMQQNING 428
           GD N +  E A       +SD  VG + K NG   +C+ D  D    D + N  G
Sbjct: 258 GDENEDDSELARDSYFYAVSDLQVGGRCKCNGHAARCVRDRTDSLVCDCRHNTAG 312

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>MTH3_DROME (Q9V818) Probable G-protein coupled receptor Mth-like 3 precursor|
           (Protein methuselah-like 3)
          Length = 511

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = +3

Query: 120 LCILFKNDTHLVIERMIPIHGRIES*CVLSSR-------TYHTWVPSSASCLPPPFAGHF 278
           +CI+     +L +E++  +HG+    C L+S          + W  SS  C+   F G+F
Sbjct: 224 ICIILTISVYLYVEKLRNLHGKCFI-CYLASLFLGYFFLVLNVWKYSSGFCVTAGFLGYF 282

Query: 279 AELCPF 296
           + +  F
Sbjct: 283 SVIAAF 288

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>RAG1_HUMAN (P15918) V(D)J recombination-activating protein 1 (RAG-1) (RING|
           finger protein 74)
          Length = 1043

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
 Frame = +2

Query: 191 VLMCPVKPHLSHLGSFLCFLFAPPVCWTFCGVVP---LSTTIFAELSSWLTYFISRSTSC 361
           +L  PV+ +  H+   +C L    V  ++C         T + + + S+L+   S    C
Sbjct: 299 ILADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKC 358

Query: 362 IRRSAT--ISLARLYYHGIFQHSFSVDILLHIN 454
             +     +SL + Y H I  H  S +I +HIN
Sbjct: 359 PAKECNEEVSLEK-YNHHISSHKESKEIFVHIN 390

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>BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2B (Extracellular|
            matrix protein F22)
          Length = 2130

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
 Frame = -3

Query: 682  EST*KIYKGRNPILGSTTFRHTT--------------LYTTALDIVRMGDSNPEAFEFAM 545
            ES  +  KGR P +GST F  +T                   + ++R      +A     
Sbjct: 773  ESRMRRRKGRPPNVGSTEFLDSTDAKLLRKLQAQEIARQAAQIKLLRKLQKQEQARAAKE 832

Query: 544  SKLSDAMVGLKEKANGSDGKCLEDILDKEKIDMQQNINGKTVLKNSMIVESRKRDRGRPT 365
            +K   A++  +EK    +   ++ +  +EKI   Q I  +  L+   I+E++K+ +    
Sbjct: 833  AKKQQAIMAAEEKRKQKEQ--IKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAA 890

Query: 364  NAR 356
            NA+
Sbjct: 891  NAK 893

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>PAR1_XENLA (P47749) Proteinase-activated receptor 1 precursor (PAR-1)|
           (Thrombin receptor)
          Length = 420

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
 Frame = +1

Query: 454 FFLCLGCPPNICRLTHLLSLLNQPLHQIILTLQTQKPLGCC-------HPFAQCLVLLYK 612
           F +C G P N+  LTH L   N+ L+   +       + CC       +  +QC   LY 
Sbjct: 321 FIICFG-PTNVLFLTHYLQEANEFLYFAYILSACVGSVSCCLDPLIYYYASSQCQRYLYS 379

Query: 613 ELC 621
            LC
Sbjct: 380 LLC 382

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>MTH4_DROME (Q9V817) Probable G-protein coupled receptor Mth-like 4 precursor|
           (Protein methuselah-like 4)
          Length = 480

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = +3

Query: 120 LCILFKNDTHLVIERMIPIHGRIES*CVLSSR-------TYHTWVPSSASCLPPPFAGHF 278
           +CI+     +L +E++  +HG+    C L+S          + W  SS  C+   F G+F
Sbjct: 221 ICIILTISVYLYVEKLRNLHGKCFI-CYLASLFLGYFFLVLNVWKYSSGFCVTAGFLGYF 279

Query: 279 AELCPF 296
           + +  F
Sbjct: 280 SVMAAF 285

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>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -1

Query: 258 GANKKQRKEPR---CDKCGLTGHIRTQCGRGWESFFR 157
           G + +Q + PR   C KCG TGH+  +C      F R
Sbjct: 398 GHSARQCRAPRRQGCWKCGKTGHVMAKCPERQAGFLR 434


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,902,989
Number of Sequences: 219361
Number of extensions: 2425115
Number of successful extensions: 7184
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 6588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7151
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result