ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13k06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1THII_ARCFU (O29382) Probable thiamine biosynthesis protein thiI 33 0.57
2CN054_HUMAN (Q8N9W8) Protein C14orf54 32 1.7
3SYM_BACTN (Q8A3M1) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth... 30 6.3

>THII_ARCFU (O29382) Probable thiamine biosynthesis protein thiI|
          Length = 374

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = -3

Query: 275 LIAAKEGKKLVITADEGSRVALAELDDNAEY*SALEFTGIIKHLLGLNEGEMALVVK 105
           LIA KEG K V+T D  S+VA   LD+     SA +   ++  L+G+++ E+  + K
Sbjct: 262 LIAEKEGCKAVVTGDSLSQVASQTLDNINVIYSASKL-AVLPPLIGMDKEEIVAIAK 317



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>CN054_HUMAN (Q8N9W8) Protein C14orf54|
          Length = 422

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 336 AKCRPHQHEPKEAQECFEGGSY 271
           A C PH H+P++ Q   +GG Y
Sbjct: 17  ALCTPHSHDPRDLQNMLDGGEY 38



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>SYM_BACTN (Q8A3M1) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 679

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 389 TIVETLDKVAITEEKCPKQNAALTNMSLRKLKSALKEGLIAAKE 258
           TIV  + K    EE   KQ   + N++ RKLK  + EG+I + E
Sbjct: 614 TIVSGIAKHYQPEELVGKQVCFIANLAPRKLKGIVSEGMILSAE 657


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,658,750
Number of Sequences: 219361
Number of extensions: 1102620
Number of successful extensions: 3179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3178
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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