ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13k06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 48 0.032
2dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 46 0.13
3gb|AE012068.1| Xanthomonas axonopodis pv. citri str. 306, secti... 46 0.13
4gb|AE012528.1| Xanthomonas campestris pv. campestris str. ATCC 3... 46 0.13
5gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 46 0.13
6gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 46 0.13
7ref|XM_467309.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.50
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
9gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complet... 44 0.50
10dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.50
11dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
12dbj|AK062786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.50
13ref|NM_118254.3| Arabidopsis thaliana transcription factor AT4G2... 42 2.0
14ref|XM_414835.1| PREDICTED: Gallus gallus similar to megakaryocy... 42 2.0
15gb|AC183990.2| Pan troglodytes BAC clone CH251-134O11 from chrom... 42 2.0
16emb|AL133322.13| Human DNA sequence from clone RP1-257L16 on chr... 42 2.0
17emb|X99911.1|DBSELBGEN D.baculatus selB gene 42 2.0
18gb|AY122937.1| Arabidopsis thaliana unknown protein (At4g21340) ... 42 2.0
19gb|AY065362.1| Arabidopsis thaliana unknown protein (At4g21340) ... 42 2.0
20emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 42 2.0
21emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, ... 42 2.0
22emb|AL031187.1|ATT6K22 Arabidopsis thaliana DNA chromosome 4, BA... 42 2.0
23gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid ... 42 2.0
24gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 42 2.0
25gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 7.8
26gb|AC102525.8| Mus musculus chromosome 8, clone RP24-133K20, com... 40 7.8
27ref|XM_515870.1| PREDICTED: Pan troglodytes similar to sodium ch... 40 7.8
28ref|XM_608042.2| PREDICTED: Bos taurus similar to sodium channel... 40 7.8
29ref|XM_874196.1| PREDICTED: Bos taurus similar to sodium channel... 40 7.8
30ref|XM_874106.1| PREDICTED: Bos taurus similar to sodium channel... 40 7.8
31ref|XM_874430.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
32ref|XM_874347.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
33ref|XM_874266.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
34ref|XM_874178.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
35ref|XM_874089.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
36ref|XM_873998.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
37ref|XM_873904.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
38ref|XM_873809.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
39ref|XM_873712.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
40ref|XM_873616.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
41ref|XM_873418.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
42ref|XM_873317.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
43ref|XM_873219.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
44ref|XM_873118.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
45ref|XM_864357.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
46ref|XM_872825.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
47ref|XM_872735.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
48ref|XM_872622.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
49ref|XM_872524.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
50ref|XM_872429.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
51ref|XM_872210.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
52ref|XM_872020.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
53ref|XM_871917.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
54ref|XM_871820.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
55ref|XM_871729.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
56ref|XM_871547.1| PREDICTED: Bos taurus similar to Sodium channel... 40 7.8
57ref|XM_422021.1| PREDICTED: Gallus gallus voltage-gated sodium c... 40 7.8
58ref|NM_001040142.1| Homo sapiens sodium channel, voltage-gated, ... 40 7.8
59ref|NM_021007.2| Homo sapiens sodium channel, voltage-gated, typ... 40 7.8
60ref|NM_001040143.1| Homo sapiens sodium channel, voltage-gated, ... 40 7.8
61gb|AC124583.4| Mus musculus BAC clone RP23-123P18 from chromosom... 40 7.8
62ref|XM_535941.2| PREDICTED: Canis familiaris similar to sodium c... 40 7.8
63ref|XM_853741.1| PREDICTED: Canis familiaris similar to sodium c... 40 7.8
64ref|XM_853704.1| PREDICTED: Canis familiaris similar to sodium c... 40 7.8
65ref|XM_535939.2| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
66ref|XM_853544.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
67ref|XM_853501.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
68ref|XM_844269.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
69ref|XM_853423.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
70ref|XM_853387.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
71ref|XM_853355.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
72ref|XM_853314.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
73ref|XM_853277.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
74ref|XM_853235.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
75ref|XM_853195.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
76ref|XM_853159.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
77ref|XM_853113.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
78ref|XM_853076.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
79ref|XM_853036.1| PREDICTED: Canis familiaris similar to Sodium c... 40 7.8
80ref|XM_001001633.1| PREDICTED: Mus musculus sodium channel, volt... 40 7.8
81ref|XM_001001623.1| PREDICTED: Mus musculus sodium channel, volt... 40 7.8
82ref|XM_980330.1| PREDICTED: Mus musculus sodium channel, voltage... 40 7.8
83gb|AC132411.3| Mus musculus BAC clone RP23-352O24 from chromosom... 40 7.8
84gb|AC125187.4| Mus musculus BAC clone RP23-302N11 from chromosom... 40 7.8
85gb|AC124386.4| Mus musculus BAC clone RP24-422C24 from chromosom... 40 7.8
86ref|NM_006920.3| Homo sapiens sodium channel, voltage-gated, typ... 40 7.8
87ref|XM_762319.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 7.8
88emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on ch... 40 7.8
89emb|AL157759.16| Human DNA sequence from clone RP11-107L16 on ch... 40 7.8
90emb|AL137026.21| Human DNA sequence from clone RP11-20J15 on chr... 40 7.8
91emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete ... 40 7.8
92emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 40 7.8
93emb|AL592550.11| Zebrafish DNA sequence from clone BUSM1-18F12 i... 40 7.8
94gb|AC162904.4| Mus musculus BAC clone RP24-152H15 from chromosom... 40 7.8
95gb|AC025888.8| Homo sapiens chromosome 18, clone RP11-479H18, co... 40 7.8
96gb|AY043484.1| Homo sapiens voltage-gated sodium channel type I ... 40 7.8
97gb|AF290478.1|AF290478 Bradyrhizobium japonicum acetyl-CoA synth... 40 7.8
98gb|AF225985.1|AF225985 Homo sapiens voltage-gated sodium channel... 40 7.8
99gb|AE004523.1| Pseudomonas aeruginosa PAO1, section 84 of 529 of... 40 7.8
100ref|NM_012647.1| Rattus norvegicus sodium channel, voltage-gated... 40 7.8
101gb|AC022336.12| Homo sapiens 3 BAC RP11-71H17 (Roswell Park Canc... 40 7.8
102dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.8
103gb|AC156454.2| Volvox carteri clone JGIAOBO-9I12, complete sequence 40 7.8
104emb|CR450733.7| Zebrafish DNA sequence from clone DKEYP-86E4 in ... 40 7.8
105emb|CR381582.9| Zebrafish DNA sequence from clone DKEY-28M3 in l... 40 7.8
106emb|BX255939.3| Zebrafish DNA sequence from clone DKEY-5G7 in li... 40 7.8
107emb|X03639.1|RNSCPIIR Rat brain mRNA for sodium channel protein II 40 7.8
108dbj|AB098335.1| Homo sapiens SCN1A mRNA for Voltage-gated sodium... 40 7.8
109dbj|AB093549.1| Homo sapiens SCN1A mRNA for Voltage-gated sodium... 40 7.8
110dbj|AB093548.1| Homo sapiens SCN1A mRNA for voltage-gated sodium... 40 7.8
111gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.8
112gb|AC144947.4| Mus musculus BAC clone RP23-319M19 from 1, comple... 40 7.8
113dbj|AB208888.1| Homo sapiens mRNA for Sodium channel protein typ... 40 7.8
114gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosom... 40 7.8
115gb|M22254.1|RATNACHII Rattus norvegicus sodium channel II mRNA 40 7.8
116gb|M94055.1|HUMHBAX Human voltage-gated sodium channel mRNA, com... 40 7.8 
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 224    tgccttcgtcggcggtgatgaccagctt 251
              ||||||| ||||||||||||||||||||
Sbjct: 896572 tgccttcatcggcggtgatgaccagctt 896599
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 225     gccttcgtcggcggtgatgaccagctt 251
               |||||||||||||||||||| ||||||
Sbjct: 4840041 gccttcgtcggcggtgatgatcagctt 4840067
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>gb|AE012068.1| Xanthomonas axonopodis pv. citri str. 306,  section 446 of 469 of the
            complete genome
          Length = 10884

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 225  gccttcgtcggcggtgatgaccagctt 251
            |||||||||||||||||||| ||||||
Sbjct: 7041 gccttcgtcggcggtgatgatcagctt 7015
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>gb|AE012528.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 436
            of 460 of the complete genome
          Length = 11874

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 225  gccttcgtcggcggtgatgaccagctt 251
            |||||||||||||||||||| ||||||
Sbjct: 2277 gccttcgtcggcggtgatgatcagctt 2251
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 225     gccttcgtcggcggtgatgaccagctt 251
               |||||||||||||||||||| ||||||
Sbjct: 4891563 gccttcgtcggcggtgatgatcagctt 4891537
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 225     gccttcgtcggcggtgatgaccagctt 251
               |||||||||||||||||||| ||||||
Sbjct: 4843811 gccttcgtcggcggtgatgatcagctt 4843837
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>ref|XM_467309.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2007

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 188  cggcgttgtcgtccagctccgcgagcgcca 217
            ||||||||||||||||||| || |||||||
Sbjct: 1990 cggcgttgtcgtccagctctgcaagcgcca 1961
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 188      cggcgttgtcgtccagctccgcgagcgcca 217
                ||||||||||||||||||| || |||||||
Sbjct: 28790107 cggcgttgtcgtccagctctgcaagcgcca 28790078



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 96       tagttatcacttcacaacta 115
                ||||||||||||||||||||
Sbjct: 28790220 tagttatcacttcacaacta 28790201
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>gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complete sequence
          Length = 202361

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 26     cccacacacacacgaaaattttgagc 51
              |||||||||||||| |||||||||||
Sbjct: 148242 cccacacacacacgcaaattttgagc 148217
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 230     cgtcggcggtgatgaccagctt 251
               ||||||||||||||||||||||
Sbjct: 5615138 cgtcggcggtgatgaccagctt 5615159



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 197     cgtccagctccgcgagcgcc 216
               ||||||||||||||||||||
Sbjct: 6985646 cgtccagctccgcgagcgcc 6985665
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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0459B01
          Length = 163087

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 188    cggcgttgtcgtccagctccgcgagcgcca 217
              ||||||||||||||||||| || |||||||
Sbjct: 106680 cggcgttgtcgtccagctctgcaagcgcca 106651



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     tagttatcacttcacaacta 115
              ||||||||||||||||||||
Sbjct: 106793 tagttatcacttcacaacta 106774
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>dbj|AK062786.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B09, full
           insert sequence
          Length = 596

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 188 cggcgttgtcgtccagctccgcgagcgcca 217
           ||||||||||||||||||| || |||||||
Sbjct: 140 cggcgttgtcgtccagctctgcaagcgcca 111



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  tagttatcacttcacaacta 115
           ||||||||||||||||||||
Sbjct: 253 tagttatcacttcacaacta 234
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>ref|NM_118254.3| Arabidopsis thaliana transcription factor AT4G21340 mRNA, complete
           cds
          Length = 1133

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  cactcctccgcagcatttgga 76
           |||||||||||||||||||||
Sbjct: 943 cactcctccgcagcatttgga 963
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>ref|XM_414835.1| PREDICTED: Gallus gallus similar to megakaryocyte potentiating
           factor precursor; megakaryocyte potentiating factor;
           mesothelin isoform 1 precursor (LOC416534), mRNA
          Length = 2856

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 42  aattttgagcgtttcactcct 62
           |||||||||||||||||||||
Sbjct: 454 aattttgagcgtttcactcct 474
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>gb|AC183990.2| Pan troglodytes BAC clone CH251-134O11 from chromosome 6, complete
             sequence
          Length = 166671

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 483   taaagcacttttaagcttcct 503
             |||||||||||||||||||||
Sbjct: 72883 taaagcacttttaagcttcct 72903
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>emb|AL133322.13| Human DNA sequence from clone RP1-257L16 on chromosome 6q12-13, complete
              sequence
          Length = 172624

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 483    taaagcacttttaagcttcct 503
              |||||||||||||||||||||
Sbjct: 158306 taaagcacttttaagcttcct 158286
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>emb|X99911.1|DBSELBGEN D.baculatus selB gene
          Length = 2196

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 224 tgccttcgtcggcggtgatgaccag 248
           ||||||||||||||| |||||||||
Sbjct: 472 tgccttcgtcggcggcgatgaccag 448
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>gb|AY122937.1| Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds
          Length = 937

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  cactcctccgcagcatttgga 76
           |||||||||||||||||||||
Sbjct: 864 cactcctccgcagcatttgga 884
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>gb|AY065362.1| Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds
          Length = 1149

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  cactcctccgcagcatttgga 76
           |||||||||||||||||||||
Sbjct: 943 cactcctccgcagcatttgga 963
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>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 225    gccttcgtcggcggtgatgac 245
              |||||||||||||||||||||
Sbjct: 235490 gccttcgtcggcggtgatgac 235470
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>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54
          Length = 198715

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 56     cactcctccgcagcatttgga 76
              |||||||||||||||||||||
Sbjct: 166165 cactcctccgcagcatttgga 166185
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>emb|AL031187.1|ATT6K22 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K22 (ESSAII project)
          Length = 89219

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    cactcctccgcagcatttgga 76
             |||||||||||||||||||||
Sbjct: 22888 cactcctccgcagcatttgga 22908
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>gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid sequence
          Length = 22437

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 195  gtcgtccagctccgcgagcgc 215
            |||||||||||||||||||||
Sbjct: 6862 gtcgtccagctccgcgagcgc 6882
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 237    ggtgatgaccagcttcttccc 257
              |||||||||||||||||||||
Sbjct: 382605 ggtgatgaccagcttcttccc 382585
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    actcggcgttgtcgtccagc 204
              ||||||||||||||||||||
Sbjct: 574001 actcggcgttgtcgtccagc 574020
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>gb|AC102525.8| Mus musculus chromosome 8, clone RP24-133K20, complete sequence
          Length = 162463

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   cacttctcctcagtgatggc 362
             ||||||||||||||||||||
Sbjct: 42994 cacttctcctcagtgatggc 43013
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>ref|XM_515870.1| PREDICTED: Pan troglodytes similar to sodium channel,
           voltage-gated, type II, alpha 2; sodium channel,
           voltage-gated, type II, alpha 2 polypeptide (LOC459701),
           mRNA
          Length = 931

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 421 ctggattcttcaagttcttc 440
           ||||||||||||||||||||
Sbjct: 602 ctggattcttcaagttcttc 583
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>ref|XM_608042.2| PREDICTED: Bos taurus similar to sodium channel, voltage-gated, type
            I, alpha, transcript variant 1 (LOC529590), mRNA
          Length = 6303

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2192 ctggattcttcaagttcttc 2173
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>ref|XM_874196.1| PREDICTED: Bos taurus similar to sodium channel, voltage-gated, type
            I, alpha, transcript variant 3 (LOC529590), mRNA
          Length = 7819

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2171 ctggattcttcaagttcttc 2152
to top
>ref|XM_874106.1| PREDICTED: Bos taurus similar to sodium channel, voltage-gated, type
            I, alpha, transcript variant 2 (LOC529590), mRNA
          Length = 6219

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2108 ctggattcttcaagttcttc 2089
to top
>ref|XM_874430.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 31 (LOC539718), mRNA
          Length = 6353

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2451 ctggattcttcaagttcttc 2432
to top
>ref|XM_874347.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 30 (LOC539718), mRNA
          Length = 6377

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2475 ctggattcttcaagttcttc 2456
to top
>ref|XM_874266.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 29 (LOC539718), mRNA
          Length = 6353

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2451 ctggattcttcaagttcttc 2432
to top
>ref|XM_874178.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 28 (LOC539718), mRNA
          Length = 6293

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2391 ctggattcttcaagttcttc 2372
to top
>ref|XM_874089.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 27 (LOC539718), mRNA
          Length = 6350

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2451 ctggattcttcaagttcttc 2432
to top
>ref|XM_873998.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 26 (LOC539718), mRNA
          Length = 6308

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2406 ctggattcttcaagttcttc 2387
to top
>ref|XM_873904.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 25 (LOC539718), mRNA
          Length = 6317

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2415 ctggattcttcaagttcttc 2396
to top
>ref|XM_873809.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 24 (LOC539718), mRNA
          Length = 6317

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2415 ctggattcttcaagttcttc 2396
to top
>ref|XM_873712.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 23 (LOC539718), mRNA
          Length = 6290

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2388 ctggattcttcaagttcttc 2369
to top
>ref|XM_873616.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 22 (LOC539718), mRNA
          Length = 6272

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2370 ctggattcttcaagttcttc 2351
to top
>ref|XM_873418.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 20 (LOC539718), mRNA
          Length = 6329

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2427 ctggattcttcaagttcttc 2408
to top
>ref|XM_873317.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 19 (LOC539718), mRNA
          Length = 6290

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2388 ctggattcttcaagttcttc 2369
to top
>ref|XM_873219.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 18 (LOC539718), mRNA
          Length = 6302

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2400 ctggattcttcaagttcttc 2381
to top
>ref|XM_873118.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 17 (LOC539718), mRNA
          Length = 6377

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2478 ctggattcttcaagttcttc 2459
to top
>ref|XM_864357.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 2 (LOC539718), mRNA
          Length = 6350

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2451 ctggattcttcaagttcttc 2432
to top
>ref|XM_872825.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 15 (LOC539718), mRNA
          Length = 6365

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2451 ctggattcttcaagttcttc 2432
to top
>ref|XM_872735.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 14 (LOC539718), mRNA
          Length = 6332

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2451 ctggattcttcaagttcttc 2432
to top
>ref|XM_872622.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 13 (LOC539718), mRNA
          Length = 6290

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2391 ctggattcttcaagttcttc 2372
to top
>ref|XM_872524.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 12 (LOC539718), mRNA
          Length = 5873

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 1983 ctggattcttcaagttcttc 1964
to top
>ref|XM_872429.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 11 (LOC539718), mRNA
          Length = 6413

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2367 ctggattcttcaagttcttc 2348
to top
>ref|XM_872210.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 9 (LOC539718), mRNA
          Length = 5624

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 1725 ctggattcttcaagttcttc 1706
to top
>ref|XM_872020.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 7 (LOC539718), mRNA
          Length = 6314

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2415 ctggattcttcaagttcttc 2396
to top
>ref|XM_871917.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 6 (LOC539718), mRNA
          Length = 6230

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2379 ctggattcttcaagttcttc 2360
to top
>ref|XM_871820.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 5 (LOC539718), mRNA
          Length = 6176

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2307 ctggattcttcaagttcttc 2288
to top
>ref|XM_871729.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 4 (LOC539718), mRNA
          Length = 6107

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2238 ctggattcttcaagttcttc 2219
to top
>ref|XM_871547.1| PREDICTED: Bos taurus similar to Sodium channel protein type II alpha
            subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 3 (LOC539718), mRNA
          Length = 6314

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2267 ctggattcttcaagttcttc 2248
to top
>ref|XM_422021.1| PREDICTED: Gallus gallus voltage-gated sodium channel I (LOC395946),
            mRNA
          Length = 12822

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2615 ctggattcttcaagttcttc 2596
to top
>ref|NM_001040142.1| Homo sapiens sodium channel, voltage-gated, type II, alpha 2
            (SCN2A2), transcript variant 2, mRNA
          Length = 8810

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2455 ctggattcttcaagttcttc 2436
to top
>ref|NM_021007.2| Homo sapiens sodium channel, voltage-gated, type II, alpha 2
            (SCN2A2), transcript variant 1, mRNA
          Length = 8876

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2521 ctggattcttcaagttcttc 2502
to top
>ref|NM_001040143.1| Homo sapiens sodium channel, voltage-gated, type II, alpha 2
            (SCN2A2), transcript variant 3, mRNA
          Length = 8571

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2216 ctggattcttcaagttcttc 2197
to top
>gb|AC124583.4| Mus musculus BAC clone RP23-123P18 from chromosome 17, complete
             sequence
          Length = 221980

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   tctctccttcattcagtccc 141
             ||||||||||||||||||||
Sbjct: 40778 tctctccttcattcagtccc 40797
to top
>ref|XM_535941.2| PREDICTED: Canis familiaris similar to sodium channel, voltage-gated,
            type I, alpha, transcript variant 1 (LOC478775), mRNA
          Length = 6306

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2192 ctggattcttcaagttcttc 2173
to top
>ref|XM_853741.1| PREDICTED: Canis familiaris similar to sodium channel, voltage-gated,
            type I, alpha, transcript variant 4 (LOC478775), mRNA
          Length = 6222

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2108 ctggattcttcaagttcttc 2089
to top
>ref|XM_853704.1| PREDICTED: Canis familiaris similar to sodium channel, voltage-gated,
            type I, alpha, transcript variant 3 (LOC478775), mRNA
          Length = 8119

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2171 ctggattcttcaagttcttc 2152
to top
>ref|XM_535939.2| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 3 (LOC478773), mRNA
          Length = 6311

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2408 ctggattcttcaagttcttc 2389
to top
>ref|XM_853544.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 17 (LOC478773), mRNA
          Length = 6071

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2168 ctggattcttcaagttcttc 2149
to top
>ref|XM_853501.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 16 (LOC478773), mRNA
          Length = 6344

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2441 ctggattcttcaagttcttc 2422
to top
>ref|XM_844269.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 4 (LOC478773), mRNA
          Length = 6329

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2426 ctggattcttcaagttcttc 2407
to top
>ref|XM_853423.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 15 (LOC478773), mRNA
          Length = 6260

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2357 ctggattcttcaagttcttc 2338
to top
>ref|XM_853387.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 14 (LOC478773), mRNA
          Length = 6164

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2261 ctggattcttcaagttcttc 2242
to top
>ref|XM_853355.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 13 (LOC478773), mRNA
          Length = 5924

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2021 ctggattcttcaagttcttc 2002
to top
>ref|XM_853314.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 12 (LOC478773), mRNA
          Length = 6026

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2123 ctggattcttcaagttcttc 2104
to top
>ref|XM_853277.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 11 (LOC478773), mRNA
          Length = 6164

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2261 ctggattcttcaagttcttc 2242
to top
>ref|XM_853235.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 10 (LOC478773), mRNA
          Length = 6110

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2261 ctggattcttcaagttcttc 2242
to top
>ref|XM_853195.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 9 (LOC478773), mRNA
          Length = 6188

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2261 ctggattcttcaagttcttc 2242
to top
>ref|XM_853159.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 8 (LOC478773), mRNA
          Length = 6173

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2261 ctggattcttcaagttcttc 2242
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>ref|XM_853113.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 7 (LOC478773), mRNA
          Length = 6167

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2261 ctggattcttcaagttcttc 2242
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>ref|XM_853076.1| PREDICTED: Canis familiaris similar to Sodium channel protein type
           II alpha subunit (Voltage-gated sodium channel alpha
           subunit Nav1.2) (Sodium channel protein, brain II alpha
           subunit) (HBSC II), transcript variant 6 (LOC478773),
           mRNA
          Length = 3883

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 421 ctggattcttcaagttcttc 440
           ||||||||||||||||||||
Sbjct: 40  ctggattcttcaagttcttc 21
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>ref|XM_853036.1| PREDICTED: Canis familiaris similar to Sodium channel protein type II
            alpha subunit (Voltage-gated sodium channel alpha subunit
            Nav1.2) (Sodium channel protein, brain II alpha subunit)
            (HBSC II), transcript variant 5 (LOC478773), mRNA
          Length = 8590

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2267 ctggattcttcaagttcttc 2248
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>ref|XM_001001633.1| PREDICTED: Mus musculus sodium channel, voltage-gated, type II, alpha
            1, transcript variant 3 (Scn2a1), mRNA
          Length = 8622

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2147 ctggattcttcaagttcttc 2128
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>ref|XM_001001623.1| PREDICTED: Mus musculus sodium channel, voltage-gated, type II, alpha
            1, transcript variant 2 (Scn2a1), mRNA
          Length = 8622

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2147 ctggattcttcaagttcttc 2128
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>ref|XM_980330.1| PREDICTED: Mus musculus sodium channel, voltage-gated, type II, alpha
            1 (Scn2a1), mRNA
          Length = 8558

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2108 ctggattcttcaagttcttc 2089
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>gb|AC132411.3| Mus musculus BAC clone RP23-352O24 from chromosome 1, complete
            sequence
          Length = 181902

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 110  caactagagccatctctcct 129
            ||||||||||||||||||||
Sbjct: 7264 caactagagccatctctcct 7283
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>gb|AC125187.4| Mus musculus BAC clone RP23-302N11 from chromosome 7, complete sequence
          Length = 247402

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   gatggcagagtcagcagtct 463
             ||||||||||||||||||||
Sbjct: 78835 gatggcagagtcagcagtct 78854
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>gb|AC124386.4| Mus musculus BAC clone RP24-422C24 from chromosome 1, complete
            sequence
          Length = 146080

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 450  agagtcagcagtcttggctt 469
            ||||||||||||||||||||
Sbjct: 5146 agagtcagcagtcttggctt 5165
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>ref|NM_006920.3| Homo sapiens sodium channel, voltage-gated, type I, alpha (SCN1A),
            mRNA
          Length = 8082

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2159 ctggattcttcaagttcttc 2140
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>ref|XM_762319.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_748_6185_2778)
            partial mRNA
          Length = 3408

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  ttcaaagcactcttgagctt 302
            ||||||||||||||||||||
Sbjct: 3341 ttcaaagcactcttgagctt 3360
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>emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on chromosome 9 Contains the
             5' end of the NTRK2 gene for Neurotrophic tyrosine kinase,
             receptor, type 2 (TRKB) and a CpG island, complete
             sequence
          Length = 182914

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 73    tggaaatgaaaaaaggcaaagcct 96
             |||||| |||||||||||||||||
Sbjct: 47039 tggaaaggaaaaaaggcaaagcct 47062
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>emb|AL157759.16| Human DNA sequence from clone RP11-107L16 on chromosome 13, complete
            sequence
          Length = 83552

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 544  gcagatgaggcaggggcagcatgg 567
            ||||||| ||||||||||||||||
Sbjct: 8494 gcagatggggcaggggcagcatgg 8471
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>emb|AL137026.21| Human DNA sequence from clone RP11-20J15 on chromosome 10 Contains CXCL12
              gene for chemokine (C-X-C motif) ligand 12 (stromal
              cell-derived factor 1), two putative transcripts and two
              putative CpG islands, complete sequence
          Length = 184474

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 479    cctttaaagcacttttaagcttccttag 506
              |||||||||||||||| || ||||||||
Sbjct: 150005 cctttaaagcacttttcagtttccttag 150032
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>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29
          Length = 292100

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    actcggcgttgtcgtccagc 204
              ||||||||||||||||||||
Sbjct: 157691 actcggcgttgtcgtccagc 157672
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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   cgtccagctccgcgagcgcc 216
             ||||||||||||||||||||
Sbjct: 45091 cgtccagctccgcgagcgcc 45110
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>emb|AL592550.11| Zebrafish DNA sequence from clone BUSM1-18F12 in linkage group 2
            Contains 37 TCR-alpha V segments (II-11 to II-26, II-28
            to II-48) three of which are pseudogenes (II-21, II-22,
            II-31), complete sequence
          Length = 96481

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  cacttcacaactagagccat 122
            ||||||||||||||||||||
Sbjct: 6823 cacttcacaactagagccat 6804
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>gb|AC162904.4| Mus musculus BAC clone RP24-152H15 from chromosome 1, complete sequence
          Length = 147442

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 450    agagtcagcagtcttggctt 469
              ||||||||||||||||||||
Sbjct: 100625 agagtcagcagtcttggctt 100644
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>gb|AC025888.8| Homo sapiens chromosome 18, clone RP11-479H18, complete sequence
          Length = 178201

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    cacacacacacgaaaatttt 47
             ||||||||||||||||||||
Sbjct: 26907 cacacacacacgaaaatttt 26926
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>gb|AY043484.1| Homo sapiens voltage-gated sodium channel type I mRNA, complete cds
          Length = 6046

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2159 ctggattcttcaagttcttc 2140
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>gb|AF290478.1|AF290478 Bradyrhizobium japonicum acetyl-CoA synthetase gene, complete cds
          Length = 1947

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 gccttcgtcggcggtgatga 244
           ||||||||||||||||||||
Sbjct: 564 gccttcgtcggcggtgatga 545
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>gb|AF225985.1|AF225985 Homo sapiens voltage-gated sodium channel alpha subunit SCN1A (SCN1A)
            mRNA, complete cds
          Length = 8131

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2177 ctggattcttcaagttcttc 2158
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>gb|AE004523.1| Pseudomonas aeruginosa PAO1, section 84 of 529 of the complete genome
          Length = 11418

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 225  gccttcgtcggcggtgatgaccagcttc 252
            |||||||||||||||||| |||| ||||
Sbjct: 3798 gccttcgtcggcggtgatcaccaccttc 3771
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>ref|NM_012647.1| Rattus norvegicus sodium channel, voltage-gated, type 2, alpha 1
            polypeptide (Scn2a1), mRNA
          Length = 8553

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2375 ctggattcttcaagttcttc 2356
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>gb|AC022336.12| Homo sapiens 3 BAC RP11-71H17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166071

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 541    gctgcagatgaggcaggggcagcatgga 568
              |||||||| |||||||||||||||||||
Sbjct: 159401 gctgcaga-gaggcaggggcagcatgga 159427
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    gccttcgtcggcggtgatga 244
              ||||||||||||||||||||
Sbjct: 614712 gccttcgtcggcggtgatga 614693
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>gb|AC156454.2| Volvox carteri clone JGIAOBO-9I12, complete sequence
          Length = 36564

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  cgagcgccaccctgctgcct 228
            ||||||||||||||||||||
Sbjct: 8916 cgagcgccaccctgctgcct 8935
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>emb|CR450733.7| Zebrafish DNA sequence from clone DKEYP-86E4 in linkage group 18,
              complete sequence
          Length = 208614

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 71     tttggaaatgaaaaaaggcaaagc 94
              ||||||||||||| ||||||||||
Sbjct: 133245 tttggaaatgaaataaggcaaagc 133268
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>emb|CR381582.9| Zebrafish DNA sequence from clone DKEY-28M3 in linkage group 18, complete
              sequence
          Length = 215124

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 71     tttggaaatgaaaaaaggcaaagc 94
              ||||||||||||| ||||||||||
Sbjct: 128713 tttggaaatgaaataaggcaaagc 128690
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>emb|BX255939.3| Zebrafish DNA sequence from clone DKEY-5G7 in linkage group 20,
             complete sequence
          Length = 168897

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 477   atcctttaaagcacttttaagctt 500
             |||||||||| |||||||||||||
Sbjct: 83245 atcctttaaaacacttttaagctt 83268
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>emb|X03639.1|RNSCPIIR Rat brain mRNA for sodium channel protein II
          Length = 8553

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2375 ctggattcttcaagttcttc 2356
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>dbj|AB098335.1| Homo sapiens SCN1A mRNA for Voltage-gated sodium channel alpha 1
            subunit, complete cds
          Length = 5946

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2108 ctggattcttcaagttcttc 2089
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>dbj|AB093549.1| Homo sapiens SCN1A mRNA for Voltage-gated sodium channel alpha1
            subunit, complete cds, isoform type
          Length = 5997

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2159 ctggattcttcaagttcttc 2140
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>dbj|AB093548.1| Homo sapiens SCN1A mRNA for voltage-gated sodium channel alpha1
            subunit, complete cds
          Length = 6030

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2192 ctggattcttcaagttcttc 2173
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 189     ggcgttgtcgtccagctccgcgagcgccaccc 220
               |||| ||||||||||| |||| ||||||||||
Sbjct: 4765543 ggcggtgtcgtccagcgccgccagcgccaccc 4765574
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>gb|AC144947.4| Mus musculus BAC clone RP23-319M19 from 1, complete sequence
          Length = 185575

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    caactagagccatctctcct 129
              ||||||||||||||||||||
Sbjct: 125692 caactagagccatctctcct 125711
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>dbj|AB208888.1| Homo sapiens mRNA for Sodium channel protein type II alpha subunit
            variant protein
          Length = 11847

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2308 ctggattcttcaagttcttc 2289
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>gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosome 17, complete sequence
          Length = 162175

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    tctctccttcattcagtccc 141
              ||||||||||||||||||||
Sbjct: 103932 tctctccttcattcagtccc 103951
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>gb|M22254.1|RATNACHII Rattus norvegicus sodium channel II mRNA
          Length = 8552

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2375 ctggattcttcaagttcttc 2356
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>gb|M94055.1|HUMHBAX Human voltage-gated sodium channel mRNA, complete cds
          Length = 6328

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ctggattcttcaagttcttc 440
            ||||||||||||||||||||
Sbjct: 2270 ctggattcttcaagttcttc 2251


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,247,466
Number of Sequences: 3902068
Number of extensions: 15247466
Number of successful extensions: 140093
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 139515
Number of HSP's gapped (non-prelim): 579
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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