| Clone Name | rbags13j19 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | gb|AC090430.7| Mus Musculus Strain C57BL6/J chromosome 10 BAC, R... | 40 | 1.5 | 2 | gb|AC130815.4| Mus musculus BAC clone RP23-19E7 from 16, complet... | 40 | 1.5 | 3 | ref|XM_414870.1| PREDICTED: Gallus gallus similar to retinoblast... | 38 | 6.1 | 4 | emb|AL442635.11| Human DNA sequence from clone RP11-259F16 on ch... | 38 | 6.1 |
|---|
>gb|AC090430.7| Mus Musculus Strain C57BL6/J chromosome 10 BAC, RP23-131G5, complete sequence Length = 185453 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 gttacagcaaatggaaaagc 65 |||||||||||||||||||| Sbjct: 172254 gttacagcaaatggaaaagc 172235
>gb|AC130815.4| Mus musculus BAC clone RP23-19E7 from 16, complete sequence Length = 195188 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gttacagcaaatggaaaagc 65 |||||||||||||||||||| Sbjct: 171451 gttacagcaaatggaaaagc 171470
>ref|XM_414870.1| PREDICTED: Gallus gallus similar to retinoblastoma-binding protein 6 isoform 2; proliferation potential-related protein; RB-binding Q-protein 1; retinoblastoma-binding protein 6 (LOC416569), mRNA Length = 6087 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 ttacagcaaatggaaaagc 65 ||||||||||||||||||| Sbjct: 604 ttacagcaaatggaaaagc 622
>emb|AL442635.11| Human DNA sequence from clone RP11-259F16 on chromosome 10 Contains the PRG1 gene for proteoglycan 1, secretory granule (PPG, PRG, SERGLYCIN), the 5' end of the VPS26 gene for vacuolar protein sorting 26 (yeast) (HB58, Hbeta58, FLJ12930), a ribosomal protein S12 (RPS12) pseudogene and a CpG island, complete sequence Length = 143093 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 tgttacagcaaatggaaaa 63 ||||||||||||||||||| Sbjct: 7978 tgttacagcaaatggaaaa 7960 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 512,774 Number of Sequences: 3902068 Number of extensions: 512774 Number of successful extensions: 37153 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37149 Number of HSP's gapped (non-prelim): 4 length of query: 130 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 109 effective length of database: 17,151,101,840 effective search space: 1869470100560 effective search space used: 1869470100560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)