ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13j16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1GRP2_NICSY (P27484) Glycine-rich protein 2 38 0.016
2GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b) 36 0.062
3CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP)... 35 0.11
4HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p... 35 0.11
5CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP)... 35 0.11
6CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (... 35 0.11
7CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP)... 35 0.11
8CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP)... 35 0.11
9LARK_DROME (Q94901) RNA-binding protein lark 33 0.40
10GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; ... 33 0.40
11GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; ... 33 0.40
12GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; ... 33 0.40
13GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; C... 33 0.40
14GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; ... 33 0.68
15SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7 33 0.68
16BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog 33 0.68
17SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Sp... 33 0.68
18GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix prote... 33 0.68
19GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix prote... 33 0.68
20GIS2_YEAST (P53849) Zinc-finger protein GIS2 32 0.89
21POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 32 0.89
22GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 32 1.2
23GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 32 1.2
24GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 32 1.2
25GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: ... 32 1.2
26POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 32 1.2
27GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 32 1.2
28POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 32 1.2
29POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 32 1.2
30POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 32 1.2
31GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 32 1.2
32POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 32 1.5
33POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 32 1.5
34GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 32 1.5
35GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 32 1.5
36GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 32 1.5
37POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 32 1.5
38POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 32 1.5
39GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; ... 32 1.5
40GAG_SIVMK (P05893) Gag polyprotein [Contains: Core protein p17; ... 32 1.5
41GAG_SIVM1 (P05894) Gag polyprotein [Contains: Core protein p17; ... 32 1.5
42GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 32 1.5
43GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.0
44POST_XENLA (P27536) Posterior protein (xPO) 31 2.0
45POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.0
46POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.0
47POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.0
48ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein ... 31 2.0
49GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.0
50GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; ... 31 2.0
51POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.0
52ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein ... 31 2.0
53GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.0
54GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.0
55SCX7_CENNO (Q9TWL1) Toxin 7 (Toxin II-13.3) (Fragment) 31 2.6
56GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.6
57GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.6
58GAG_HV1EL (P04592) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.6
59GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.6
60ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13 31 2.6
61POL_HV1Z2 (P12499) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.6
62GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.6
63POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.6
64POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.6
65POL_HV1EL (P04589) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.6
66POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.6
67POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.6
68POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.6
69GAG_HV1Z2 (P12495) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.6
70GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.6
71GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.6
72POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.6
73GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; ... 31 2.6
74POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.6
75GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.6
76POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 31 2.6
77GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 31 2.6
78CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity fa... 30 3.4
79RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro... 30 3.4
80GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: ... 30 3.4
81GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; ... 30 3.4
82GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 3.4
83GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; ... 30 3.4
84POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 3.4
85GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; ... 30 3.4
86CPSF4_MOUSE (Q8BQZ5) Cleavage and polyadenylation specificity fa... 30 3.4
87POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 4.4
88GAG_HV1ND (P18800) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 4.4
89GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; ... 30 4.4
90POL_HV1ND (P18802) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 4.4
91GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 4.4
92RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro... 29 7.6
93RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro... 29 7.6
94RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p... 29 7.6
95RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro... 29 7.6
96GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: ... 29 7.6
97POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 7.6
98GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 7.6
99GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 7.6
100POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 7.6
101SCX4_CENLL (Q7Z1K8) Sodium-channel modifier toxin Cll4 precursor 29 7.6
102RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro... 29 7.6
103RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p... 29 7.6
104GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: ... 29 7.6
105GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; ... 29 7.6
106RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro... 29 7.6
107GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; ... 29 7.6
108SPR4_CAEEL (O17582) Suppressor of presenilin protein 4 29 9.9
109ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9 29 9.9
110ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9 29 9.9
111GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polypro... 29 9.9
112GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag poly... 29 9.9 
>GRP2_NICSY (P27484) Glycine-rich protein 2|
          Length = 214

 Score = 38.1 bits (87), Expect = 0.016
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -2

Query: 540 CYECGESGHFARECRLRIGAGG 475
           C++CGESGHFAR+C    G GG
Sbjct: 159 CFKCGESGHFARDCSQSGGGGG 180



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY+CGE GHFAREC
Sbjct: 196 CYKCGEDGHFAREC 209
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>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)|
          Length = 201

 Score = 36.2 bits (82), Expect = 0.062
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 546 MKCYECGESGHFAREC 499
           + CY CGESGHFAR+C
Sbjct: 180 LSCYSCGESGHFARDC 195



 Score = 32.0 bits (71), Expect = 1.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 540 CYECGESGHFARECRLRIGAGG 475
           C++CGE GH AREC    G GG
Sbjct: 138 CFKCGEPGHMARECSQ--GGGG 157
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>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 178

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 546 MKCYECGESGHFARECRLRIGA 481
           + CY CGESGH AREC +   A
Sbjct: 157 VNCYRCGESGHLARECTIEATA 178



 Score = 33.1 bits (74), Expect = 0.52
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 540 CYECGESGHFARECRLR 490
           CY CGESGH A++C L+
Sbjct: 54  CYRCGESGHLAKDCDLQ 70



 Score = 32.7 bits (73), Expect = 0.68
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 543 KCYECGESGHFARECRLRIGAG 478
           +C++CG SGH+AREC    G G
Sbjct: 5   ECFKCGRSGHWARECPTGGGRG 26



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 546 MKCYECGESGHFAREC 499
           +KCY CGE+GH A  C
Sbjct: 136 VKCYRCGETGHVAINC 151



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           KCY CGE GH  ++C
Sbjct: 119 KCYSCGEFGHIQKDC 133



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY CG+ GH AR+C
Sbjct: 99  CYNCGKPGHLARDC 112



 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 540 CYECGESGHFARECR 496
           CY CG  GH A++C+
Sbjct: 75  CYNCGRGGHIAKDCK 89
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>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)|
          Length = 271

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           KCY+CGESGH +REC
Sbjct: 197 KCYKCGESGHMSREC 211



 Score = 32.0 bits (71), Expect = 1.2
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 540 CYECGESGHFAREC--RLRIGAGG 475
           C+ CGE GH +REC    R GA G
Sbjct: 45  CFRCGEEGHMSRECPNEARSGAAG 68



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY+CGE+GH +R+C
Sbjct: 255 CYKCGEAGHISRDC 268



 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 546 MKCYECGESGHFAREC 499
           M C+ CGE+GH +R+C
Sbjct: 70  MTCFRCGEAGHMSRDC 85



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY+CG+ GH +REC
Sbjct: 224 CYKCGKPGHISREC 237



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY+CG++GH +R+C
Sbjct: 170 CYKCGDAGHISRDC 183



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY+CG++GH +R+C
Sbjct: 142 CYKCGDAGHISRDC 155



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           +CY+CG+ GH +R+C
Sbjct: 98  ECYKCGQEGHLSRDC 112



 Score = 28.9 bits (63), Expect = 9.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           C  CG+ GH+AREC
Sbjct: 18  CRNCGKEGHYAREC 31
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>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 172

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 546 MKCYECGESGHFARECRLRIGA 481
           + CY CGESGH AREC +   A
Sbjct: 151 VNCYRCGESGHLARECTIEATA 172



 Score = 34.7 bits (78), Expect = 0.18
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 543 KCYECGESGHFARECRLRIGAG 478
           +C++CG +GH+AREC   IG G
Sbjct: 5   ECFKCGRTGHWARECPTGIGRG 26



 Score = 33.1 bits (74), Expect = 0.52
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 540 CYECGESGHFARECRLR 490
           CY CGESGH A++C L+
Sbjct: 48  CYRCGESGHLAKDCDLQ 64



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 546 MKCYECGESGHFAREC 499
           +KCY CGE+GH A  C
Sbjct: 130 VKCYRCGETGHVAINC 145



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           KCY CGE GH  ++C
Sbjct: 113 KCYSCGEFGHIQKDC 127



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY CG+ GH AR+C
Sbjct: 93  CYNCGKPGHLARDC 106



 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 540 CYECGESGHFARECR 496
           CY CG  GH A++C+
Sbjct: 69  CYNCGRGGHIAKDCK 83
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>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 546 MKCYECGESGHFARECRLRIGA 481
           + CY CGESGH AREC +   A
Sbjct: 156 VNCYRCGESGHLARECTIEATA 177



 Score = 33.1 bits (74), Expect = 0.52
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 540 CYECGESGHFARECRLR 490
           CY CGESGH A++C L+
Sbjct: 54  CYRCGESGHLAKDCDLQ 70



 Score = 32.7 bits (73), Expect = 0.68
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 543 KCYECGESGHFARECRLRIGAG 478
           +C++CG SGH+AREC    G G
Sbjct: 5   ECFKCGRSGHWARECPTGGGRG 26



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 546 MKCYECGESGHFAREC 499
           +KCY CGE+GH A  C
Sbjct: 135 VKCYRCGETGHVAINC 150



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           KCY CGE GH  ++C
Sbjct: 118 KCYSCGEFGHIQKDC 132



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY CG+ GH AR+C
Sbjct: 98  CYNCGKPGHLARDC 111



 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 540 CYECGESGHFARECR 496
           CY CG  GH A++C+
Sbjct: 74  CYNCGRGGHIAKDCK 88
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>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 546 MKCYECGESGHFARECRLRIGA 481
           + CY CGESGH AREC +   A
Sbjct: 156 VNCYRCGESGHLARECTIEATA 177



 Score = 33.1 bits (74), Expect = 0.52
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 540 CYECGESGHFARECRLR 490
           CY CGESGH A++C L+
Sbjct: 54  CYRCGESGHLAKDCDLQ 70



 Score = 32.7 bits (73), Expect = 0.68
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 543 KCYECGESGHFARECRLRIGAG 478
           +C++CG SGH+AREC    G G
Sbjct: 5   ECFKCGRSGHWARECPTGGGRG 26



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 546 MKCYECGESGHFAREC 499
           +KCY CGE+GH A  C
Sbjct: 135 VKCYRCGETGHVAINC 150



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           KCY CGE GH  ++C
Sbjct: 118 KCYSCGEFGHIQKDC 132



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY CG+ GH AR+C
Sbjct: 98  CYNCGKPGHLARDC 111



 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 540 CYECGESGHFARECR 496
           CY CG  GH A++C+
Sbjct: 74  CYNCGRGGHIAKDCK 88
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>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 546 MKCYECGESGHFARECRLRIGA 481
           + CY CGESGH AREC +   A
Sbjct: 156 VNCYRCGESGHLARECTIEATA 177



 Score = 33.1 bits (74), Expect = 0.52
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 540 CYECGESGHFARECRLR 490
           CY CGESGH A++C L+
Sbjct: 54  CYRCGESGHLAKDCDLQ 70



 Score = 32.7 bits (73), Expect = 0.68
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 543 KCYECGESGHFARECRLRIGAG 478
           +C++CG SGH+AREC    G G
Sbjct: 5   ECFKCGRSGHWARECPTGGGRG 26



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 546 MKCYECGESGHFAREC 499
           +KCY CGE+GH A  C
Sbjct: 135 VKCYRCGETGHVAINC 150



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           KCY CGE GH  ++C
Sbjct: 118 KCYSCGEFGHIQKDC 132



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY CG+ GH AR+C
Sbjct: 98  CYNCGKPGHLARDC 111



 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 540 CYECGESGHFARECR 496
           CY CG  GH A++C+
Sbjct: 74  CYNCGRGGHIAKDCK 88
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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 543 KCYECGESGHFAREC-RLRIGAGG 475
           +CY CG SGH+++EC RL   AGG
Sbjct: 169 QCYRCGRSGHWSKECPRLYGSAGG 192
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>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 543 KCYECGESGHFARECR 496
           KCY CG+ GH AR+CR
Sbjct: 386 KCYNCGKPGHLARQCR 401
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>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 543 KCYECGESGHFARECR 496
           KCY CG+ GH AR+CR
Sbjct: 386 KCYNCGKPGHLARQCR 401
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>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 543 KCYECGESGHFARECR 496
           KCY CG+ GH AR+CR
Sbjct: 386 KCYNCGKPGHLARQCR 401
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>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 543 KCYECGESGHFARECR 496
           KCY CG+ GH AR+CR
Sbjct: 386 KCYNCGKPGHLARQCR 401
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>GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 446

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 543 KCYECGESGHFARECR 496
           KCY CG+ GH AR+CR
Sbjct: 385 KCYYCGKPGHLARQCR 400
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>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7|
          Length = 267

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           +CYECGE GH+A +C
Sbjct: 134 RCYECGEKGHYAYDC 148
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>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog|
          Length = 179

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           +CY CGE+GH AREC
Sbjct: 18  RCYNCGENGHQAREC 32



 Score = 31.6 bits (70), Expect = 1.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 543 KCYECGESGHFARECR 496
           +CY+CG  GH AR+CR
Sbjct: 84  ECYKCGRVGHIARDCR 99



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 546 MKCYECGESGHFARECRLRI 487
           M CY CG  GH AR+C + +
Sbjct: 116 MNCYACGSYGHQARDCTMGV 135
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>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor|
           9G8)
          Length = 238

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           +CYECGE GH+A +C
Sbjct: 105 RCYECGEKGHYAYDC 119
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>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein p17;|
           Capsid protein p26; Nucleocapsid protein p14]
          Length = 476

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 543 KCYECGESGHFARECRLRIG 484
           KCY CG+ GH AR CR + G
Sbjct: 422 KCYHCGKPGHQARNCRSKNG 441
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>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein p17;|
           Capsid protein p26; Nucleocapsid protein p14]
          Length = 476

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 543 KCYECGESGHFARECRLRIG 484
           KCY CG+ GH AR CR + G
Sbjct: 422 KCYHCGKPGHQARNCRSKNG 441
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>GIS2_YEAST (P53849) Zinc-finger protein GIS2|
          Length = 153

 Score = 32.3 bits (72), Expect = 0.89
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KCY CG++GH +R+C+
Sbjct: 116 LKCYTCGQAGHMSRDCQ 132



 Score = 29.3 bits (64), Expect = 7.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 546 MKCYECGESGHFARECRLRIGAGGL 472
           + CY+CG   H A++C    G  GL
Sbjct: 92  VSCYKCGGPNHMAKDCMKEDGISGL 116



 Score = 29.3 bits (64), Expect = 7.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 543 KCYECGESGHFARECRLR 490
           +CY CGE+GH   EC ++
Sbjct: 48  QCYNCGETGHVRSECTVQ 65
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>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein; Protease (EC|
           3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 1886

 Score = 32.3 bits (72), Expect = 0.89
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 543 KCYECGESGHFARECR 496
           KCY CG+ GH+A +CR
Sbjct: 880 KCYICGQEGHYANQCR 895
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>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 VKCFNCGKEGHIARNCR 405
to top
>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 IKCFNCGKEGHLARNCR 405
to top
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 504

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 395 IKCFNCGKEGHLARNCR 411
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>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 653

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -2

Query: 540 CYECGESGHFARECR 496
           C++CG+ GHFA++CR
Sbjct: 545 CFKCGKKGHFAKDCR 559
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>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 VKCFNCGKEGHIARNCR 405
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>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 503

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 VKCFNCGKEGHIARNCR 405
to top
>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1438

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 VKCFNCGKEGHIARNCR 405
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>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR)] (Fragment)
          Length = 531

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 IKCFNCGKEGHLARNCR 405
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>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1439

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 395 IKCFNCGKEGHLARNCR 411
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>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 VKCFNCGKEGHIARNCR 405
to top
>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR+CR
Sbjct: 388 IKCWNCGKEGHSARQCR 404
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>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR+CR
Sbjct: 388 IKCWNCGKDGHSARQCR 404
to top
>GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR+CR
Sbjct: 388 IKCWNCGKEGHSARQCR 404
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>GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR+CR
Sbjct: 388 IKCWNCGKDGHSARQCR 404
to top
>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR+CR
Sbjct: 388 IKCWNCGKEGHSARQCR 404
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>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR+CR
Sbjct: 387 IKCWNCGKEGHSARQCR 403
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>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR+CR
Sbjct: 388 IKCWNCGKEGHSARQCR 404
to top
>GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 507

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR+CR
Sbjct: 392 IKCWNCGKEGHSARQCR 408
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>GAG_SIVMK (P05893) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 506

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR+CR
Sbjct: 391 IKCWNCGKEGHSARQCR 407
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>GAG_SIVM1 (P05894) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 506

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR+CR
Sbjct: 391 IKCWNCGKEGHSARQCR 407
to top
>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 519

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR+CR
Sbjct: 387 IKCWNCGKEGHSARQCR 403
to top
>GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 VKCFNCGKEGHTARNCR 405
to top
>POST_XENLA (P27536) Posterior protein (xPO)|
          Length = 555

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 543 KCYECGESGHFARECR 496
           KCY CG+ GH AR CR
Sbjct: 414 KCYSCGKYGHIARFCR 429
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>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 VKCFNCGKEGHTARNCR 405
to top
>POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 VKCFNCGKEGHTARNCR 405
to top
>POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 VKCFNCGKEGHTARNCR 405
to top
>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 1168

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 546  MKCYECGESGHFARECR 496
            + CY CG SGH+A++C+
Sbjct: 1121 VSCYNCGVSGHYAQDCK 1137
to top
>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 543 KCYECGESGHFARECR 496
           KC+ CG+ GH AR+CR
Sbjct: 389 KCWNCGKEGHSARQCR 404
to top
>GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 441

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 543 KCYECGESGHFARECR 496
           +CY CG+ GH AR+CR
Sbjct: 380 RCYNCGKPGHQARQCR 395
to top
>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 543 KCYECGESGHFARECR 496
           KC+ CG+ GH AR+CR
Sbjct: 389 KCWNCGKEGHSARQCR 404
to top
>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 899

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           + CY CG SGH+A++C+
Sbjct: 852 VSCYNCGVSGHYAQDCK 868
to top
>GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 VKCFNCGKEGHTARNCR 405
to top
>GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR CR
Sbjct: 389 VKCFNCGKEGHTARNCR 405
to top
>SCX7_CENNO (Q9TWL1) Toxin 7 (Toxin II-13.3) (Fragment)|
          Length = 55

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 543 KCYECGESGHFARECRLRIGAG 478
           +CY+ G++ +  REC+LR+G G
Sbjct: 15  ECYKLGDNDYCLRECKLRVGKG 36
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>GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 389 VKCFNCGKEGHIAKNCR 405
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>GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 389 VKCFNCGKEGHIAKNCR 405
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>GAG_HV1EL (P04592) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 390 IKCFNCGKEGHIAKNCR 406
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>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR C+
Sbjct: 389 VKCFNCGKEGHIARNCK 405
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>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13|
          Length = 166

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 540 CYECGESGHFARECR 496
           CY CG SGH A++C+
Sbjct: 67  CYNCGRSGHIAKDCK 81



 Score = 28.9 bits (63), Expect = 9.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 546 MKCYECGESGHFAREC 499
           +KCY CGE GH A  C
Sbjct: 128 VKCYRCGEIGHVAINC 143
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>POL_HV1Z2 (P12499) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1435

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 391 IKCFNCGKEGHIAKNCR 407
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>GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 501

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 391 VKCFNCGKEGHIAKNCR 407
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>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 389 VKCFNCGKEGHIAKNCR 405
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>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 389 VKCFNCGKEGHIAKNCR 405
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>POL_HV1EL (P04589) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 390 IKCFNCGKEGHIAKNCR 406
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>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR C+
Sbjct: 389 VKCFNCGKEGHIARNCK 405
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>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1440

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 392 IKCFNCGKEGHIAKNCR 408
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>POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1436

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 391 VKCFNCGKEGHIAKNCR 407
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>GAG_HV1Z2 (P12495) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 500

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 391 IKCFNCGKEGHIAKNCR 407
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>GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 492

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 383 IKCFNCGKEGHLAKNCR 399
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>GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 506

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 392 IKCFNCGKEGHIAKNCR 408
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>POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1427

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 383 IKCFNCGKEGHLAKNCR 399
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>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein|
           p25; Core protein p16]
          Length = 508

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR C+
Sbjct: 400 IKCFNCGKEGHLARNCK 416
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>POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1433

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 388 VKCFNCGKEGHIAKNCR 404
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>GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 498

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 388 VKCFNCGKEGHIAKNCR 404
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>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR)] (Fragment)
          Length = 549

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR C+
Sbjct: 389 VKCFNCGKEGHIARNCK 405
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>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH AR C+
Sbjct: 389 VKCFNCGKEGHIARNCK 405
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>CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity factor, 30 kDa|
           subunit (CPSF 30 kDa subunit) (NS1 effector
           domain-binding protein 1) (Neb-1) (No arches homolog)
          Length = 269

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY+CGE GH+A  C
Sbjct: 245 CYKCGEKGHYANRC 258
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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 540 CYECGESGHFARECRL 493
           CY CG+ GH+++EC L
Sbjct: 162 CYRCGQEGHWSKECPL 177
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>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC|
           3.4.23.-)]
          Length = 827

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 540 CYECGESGHFARECRLRIGAGG 475
           C+ CG+ GHF ++CR     GG
Sbjct: 460 CFNCGKPGHFKKDCRAPDKQGG 481
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>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 521

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           M+C +CG+ GH A++CR
Sbjct: 423 MRCLKCGKPGHLAKDCR 439



 Score = 29.6 bits (65), Expect = 5.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 546 MKCYECGESGHFAREC 499
           +KCY CG+ GH  R+C
Sbjct: 402 VKCYNCGKFGHMQRQC 417
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>GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           ++C+ CG+ GH AR+CR
Sbjct: 389 IRCWNCGKEGHSARQCR 405
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>GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 507

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A++CR
Sbjct: 392 IKCWNCGKEGHSAKQCR 408
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>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           ++C+ CG+ GH AR+CR
Sbjct: 389 IRCWNCGKEGHSARQCR 405
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>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 513

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH  REC+
Sbjct: 390 LKCFNCGKFGHMQRECK 406



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC++CG+ GH A++C+
Sbjct: 411 IKCFKCGKIGHMAKDCK 427
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>CPSF4_MOUSE (Q8BQZ5) Cleavage and polyadenylation specificity factor, 30 kDa|
           subunit (CPSF 30 kDa subunit) (Clipper homolog)
           (Clipper/CPSF 30K)
          Length = 211

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY+CGE GH+A  C
Sbjct: 187 CYKCGEKGHYANRC 200
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>POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1435

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 389 VKCFNCGKVGHIAKNCR 405
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>GAG_HV1ND (P18800) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 496

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 387 IKCFNCGKEGHTAKNCR 403
to top
>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 520

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC +CG+ GH A++CR
Sbjct: 419 IKCLKCGKPGHLAKDCR 435



 Score = 29.3 bits (64), Expect = 7.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           KCY CG+ GH  R+C
Sbjct: 399 KCYNCGKFGHMQRQC 413
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>POL_HV1ND (P18802) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1431

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 387 IKCFNCGKEGHTAKNCR 403
to top
>GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 500

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A+ CR
Sbjct: 389 VKCFNCGKVGHIAKNCR 405
to top
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY CG+ GH+++EC
Sbjct: 162 CYRCGKEGHWSKEC 175
to top
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY CG+ GH+++EC
Sbjct: 162 CYRCGKEGHWSKEC 175
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>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY CG+ GH+++EC
Sbjct: 162 CYRCGKEGHWSKEC 175
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>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY CG+ GH+++EC
Sbjct: 162 CYRCGKEGHWSKEC 175
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>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 657

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 540 CYECGESGHFARECRLRI 487
           C++CG  GHFA+ C   I
Sbjct: 549 CFKCGRKGHFAKNCHEHI 566
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>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1464

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 540 CYECGESGHFARECR 496
           C+ CG+ GH AR+CR
Sbjct: 389 CWNCGKQGHTARQCR 403
to top
>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 540 CYECGESGHFARECR 496
           C+ CG+ GH AR+CR
Sbjct: 389 CWNCGKQGHTARQCR 403
to top
>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           ++C+ CG+ GH A++CR
Sbjct: 388 IRCWNCGKEGHSAKQCR 404
to top
>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           ++C+ CG+ GH A++CR
Sbjct: 388 IRCWNCGKEGHSAKQCR 404
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>SCX4_CENLL (Q7Z1K8) Sodium-channel modifier toxin Cll4 precursor|
          Length = 87

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 543 KCYECGESGHFARECRLRIGAG 478
           +CY+ G++ +  REC+LR G G
Sbjct: 34  ECYKLGDNDYCLRECKLRYGKG 55
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>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY CG+ GH+++EC
Sbjct: 162 CYRCGKEGHWSKEC 175
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>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY CG+ GH+++EC
Sbjct: 162 CYRCGKEGHWSKEC 175
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>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp24; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 656

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           C++CG+ GHFA+ C
Sbjct: 548 CFKCGKKGHFAKNC 561
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>GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 510

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 546 MKCYECGESGHFARECR 496
           +KC+ CG+ GH A++C+
Sbjct: 391 VKCWNCGKEGHTAKQCK 407
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>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 540 CYECGESGHFAREC 499
           CY CG+ GH+++EC
Sbjct: 162 CYRCGKEGHWSKEC 175
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>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 519

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 543 KCYECGESGHFARECR 496
           KC +CG+ GH A++CR
Sbjct: 419 KCLKCGKLGHLAKDCR 434



 Score = 28.9 bits (63), Expect = 9.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 546 MKCYECGESGHFAREC 499
           ++CY CG+ GH  R+C
Sbjct: 397 LRCYNCGKFGHMQRQC 412
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>SPR4_CAEEL (O17582) Suppressor of presenilin protein 4|
          Length = 1311

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 279  HQENHPWHGLVTCYSCDH 332
            H + H W+ L  CYSCD+
Sbjct: 1180 HLDRHGWNQLYKCYSCDY 1197
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>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9|
          Length = 273

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           KC+ CGE GH +R C
Sbjct: 185 KCFVCGEMGHLSRSC 199
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>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9|
          Length = 271

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           KC+ CGE GH +R C
Sbjct: 185 KCFVCGEMGHLSRSC 199
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>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 666

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           KCY CG+ GH  R C
Sbjct: 543 KCYNCGQIGHLKRSC 557
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>GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 622

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 543 KCYECGESGHFAREC 499
           KCY CG+ GH  R C
Sbjct: 591 KCYNCGQIGHLKRSC 605


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,601,349
Number of Sequences: 219361
Number of extensions: 979372
Number of successful extensions: 2683
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 2397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2679
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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