ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13j12 |
|---|---|
| Clone Library Name | barley_pub |
>VATH_ARATH (Q9LX65) Probable vacuolar ATP synthase subunit H (EC 3.6.3.14)| (V-ATPase H subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 441 Score = 215 bits (548), Expect = 9e-56 Identities = 96/128 (75%), Positives = 120/128 (93%) Frame = -2 Query: 672 KENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTST 493 K+ +K+LSSFDKYKQ+VLLGHLDW+PMHK+ NFWREN+T FEENDFQILRVL+T++DTS+ Sbjct: 313 KDKIKKLSSFDKYKQEVLLGHLDWNPMHKETNFWRENVTCFEENDFQILRVLLTILDTSS 372 Query: 492 DTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFLG 313 D +LAVAC+D+SQF+QYH +GR++VADLKAK+RVMKL+NH+NAEV KN++LC+QRL LG Sbjct: 373 DPRSLAVACFDISQFIQYHAAGRVIVADLKAKERVMKLINHENAEVTKNAILCIQRLLLG 432 Query: 312 AKYASFLQ 289 AKYASFLQ Sbjct: 433 AKYASFLQ 440
>VATH_MANSE (Q9U5N0) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 475 Score = 111 bits (278), Expect = 2e-24 Identities = 49/117 (41%), Positives = 78/117 (66%) Frame = -2 Query: 666 NLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDT 487 +++ LSSFD+Y +V G L+WSP+HK FWREN E ++LR L+ +++ S D Sbjct: 332 SVQDLSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSHDP 391 Query: 486 TALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 316 LAVACYD+ ++++++P G+ ++ L K RVM L++HD+ VR +LL VQ+L + Sbjct: 392 VVLAVACYDVGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMV 448
>VATH_PIG (Q9TVC1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 109 bits (273), Expect = 7e-24 Identities = 46/118 (38%), Positives = 80/118 (67%) Frame = -2 Query: 669 ENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTD 490 E+++ LSSFD+Y ++ G L+WSP+HK FWREN E ++++L++L +++ S D Sbjct: 344 ESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDD 403 Query: 489 TTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 316 LAVA +D+ ++++++P G+ V+ L K VM M+H++ +VR N+LL VQ+L + Sbjct: 404 PQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461
>VATH_MOUSE (Q8BVE3) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) Length = 483 Score = 109 bits (273), Expect = 7e-24 Identities = 46/118 (38%), Positives = 80/118 (67%) Frame = -2 Query: 669 ENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTD 490 E+++ LSSFD+Y ++ G L+WSP+HK FWREN E ++++L++L +++ S D Sbjct: 344 ESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDD 403 Query: 489 TTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 316 LAVA +D+ ++++++P G+ V+ L K VM M+H++ +VR N+LL VQ+L + Sbjct: 404 PQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461
>VATH_HUMAN (Q9UI12) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) (VMA13) (Nef-binding protein 1) (NBP1) Length = 483 Score = 109 bits (273), Expect = 7e-24 Identities = 46/118 (38%), Positives = 80/118 (67%) Frame = -2 Query: 669 ENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTD 490 E+++ LSSFD+Y ++ G L+WSP+HK FWREN E ++++L++L +++ S D Sbjct: 344 ESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDD 403 Query: 489 TTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 316 LAVA +D+ ++++++P G+ V+ L K VM M+H++ +VR N+LL VQ+L + Sbjct: 404 PQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461
>VATH_DROME (Q9V3J1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 468 Score = 108 bits (271), Expect = 1e-23 Identities = 46/119 (38%), Positives = 81/119 (68%) Frame = -2 Query: 672 KENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTST 493 + +++ LSSFD+Y +V G L+WSP+HK FWREN E ++++LR+L+ +++TS Sbjct: 322 QNSVQDLSSFDEYATEVRSGRLEWSPVHKSAKFWRENAQRLNEKNYELLRILVHLLETSK 381 Query: 492 DTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 316 D L+VAC+D+ ++++++P G+ V+ L K VM+ + H++ VR +LL VQ+L + Sbjct: 382 DAIILSVACFDIGEYVRHYPRGKHVLEQLGGKQIVMQHLGHEDPNVRYEALLAVQKLMV 440
>VATH_BOVIN (O46563) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 108 bits (271), Expect = 1e-23 Identities = 46/118 (38%), Positives = 80/118 (67%) Frame = -2 Query: 669 ENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTD 490 E+++ LSSFD+Y ++ G L+WSP+HK FWREN E ++++L++L +++ S D Sbjct: 344 ESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENPARLNEKNYELLKILTKLLEVSDD 403 Query: 489 TTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 316 LAVA +D+ ++++++P G+ V+ L K VM M+H++ +VR N+LL VQ+L + Sbjct: 404 PQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461
>VATH_SCHPO (O14265) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 54 kDa subunit) Length = 450 Score = 101 bits (251), Expect = 2e-21 Identities = 46/116 (39%), Positives = 73/116 (62%) Frame = -2 Query: 669 ENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTD 490 E+ K LS+FD YK ++ G L WSP H+ +FW +N E+++ +L+ L ++ + D Sbjct: 323 ESSKHLSTFDMYKSELDTGILHWSPSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQYNED 382 Query: 489 TTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRL 322 T+LAVAC+DL +++ +P GR ++ AK R+M LM+H + EVR +L VQ L Sbjct: 383 NTSLAVACHDLGAYIRSYPEGRSLIIKYGAKQRIMDLMSHPDPEVRFEALSTVQLL 438
>VATH2_CAEEL (Q22494) Probable vacuolar ATP synthase subunit H 2 (EC 3.6.3.14)| (V-ATPase H subunit 2) (Vacuolar proton pump H subunit 2) (Vacuolar proton pump subunit SFD 2) Length = 470 Score = 101 bits (251), Expect = 2e-21 Identities = 42/113 (37%), Positives = 76/113 (67%) Frame = -2 Query: 654 LSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTSTDTTALA 475 LSS+D+Y +V G L WSP+HK FWREN + F + F+++++L+ ++++S D L Sbjct: 336 LSSYDEYYSEVRSGRLQWSPVHKSEKFWRENASKFNDKQFEVVKILIKLLESSHDPLILC 395 Query: 474 VACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 316 VA +D+ ++++++P G+ VV + K VM+L+ ++ VR ++LL VQ+L + Sbjct: 396 VASHDIGEYVRHYPRGKTVVEQYQGKAAVMRLLTAEDPNVRYHALLAVQKLMV 448
>VATH1_CAEEL (Q20666) Probable vacuolar ATP synthase subunit H 1 (EC 3.6.3.14)| (V-ATPase H subunit 1) (Vacuolar proton pump H subunit 1) (Vacuolar proton pump subunit SFD 1) Length = 451 Score = 93.2 bits (230), Expect = 6e-19 Identities = 42/119 (35%), Positives = 75/119 (63%) Frame = -2 Query: 672 KENLKRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTVIDTST 493 K+ ++ L+SFD+Y+ ++ G L WSP HK FW EN +N ++L++L+ +++ S Sbjct: 323 KKVVQVLTSFDEYENELRQGSLHWSPAHKCEVFWNENAHRLNDNRQELLKLLVAMLEKSN 382 Query: 492 DTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQRLFL 316 D L VA +D+ +F++Y+P G+L V L K+ +M+L+ + VR ++LL Q+L + Sbjct: 383 DPLVLCVAAHDIGEFVRYYPRGKLKVEQLGGKEAMMRLLTVKDPNVRYHALLAAQKLMI 441
>VATH_YEAST (P41807) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 54 kDa subunit) Length = 478 Score = 59.3 bits (142), Expect = 1e-08 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Frame = -2 Query: 660 KRLSSFDKYKQQVLLGHLDWSPMHKDPNFWRENITNFEENDFQILRVLMTV--------- 508 + L+SFD+Y ++ L WSP H D FW +NI F++++++I R L+ + Sbjct: 351 QELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGD 410 Query: 507 IDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEVRKNSLLCVQ 328 ++ + + VA D++ ++ P V+ K +M+L+NH ++ V+ +L Q Sbjct: 411 VNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ 470 Query: 327 RL 322 + Sbjct: 471 AI 472
>CYB52_SCHPO (Q9USM6) Probable cytochrome b5 2| Length = 129 Score = 30.8 bits (68), Expect = 3.9 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 465 YDLSQFLQYHPSGRLVVADLKAKD 394 YD+S+FL HP G V+ DL +D Sbjct: 29 YDISKFLDAHPGGEEVLVDLAGRD 52
>MIP1_SCHPO (P87141) WD-repeat protein mip1| Length = 1313 Score = 30.0 bits (66), Expect = 6.6 Identities = 20/95 (21%), Positives = 45/95 (47%) Frame = -2 Query: 534 QILRVLMTVIDTSTDTTALAVACYDLSQFLQYHPSGRLVVADLKAKDRVMKLMNHDNAEV 355 QIL ++ +S + A+ + LS F + P G+L + + + +N ++ + Sbjct: 578 QILNPNSSIFPSSNISEHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSPDSLL 637 Query: 354 RKNSLLCVQRLFLGAKYASFLQV*DHKVLYLYEVL 250 R+ + LC+ +L+ A + D+ + L E++ Sbjct: 638 RQWACLCISQLWENYSEAKWSGTRDNAHVKLAEII 672
>UVRB_PROMT (Q46IE1) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 678 Score = 29.6 bits (65), Expect = 8.7 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = +2 Query: 233 MGFGGSNTSYKYKTLWSYTCRKLAYLAPRKSL----CTQSREFFLTSALSWFMSF 385 +G G+ ++ L + T R LA K+L C + REFF +A+ +F+S+ Sbjct: 37 LGATGTGKTFTIANLIAQTGRPALVLAHNKTLAAQLCNELREFFPDNAVEYFISY 91
>MAGG1_MOUSE (Q9CPR8) Melanoma-associated antigen G1 (MAGE-G1 antigen)| (Necdin-like protein 2) Length = 279 Score = 29.6 bits (65), Expect = 8.7 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 532 LEIIFLKVSDILSPEIWVFVHWRPIKMAKKHLLF 633 L +IF+K + I E+W F+ + KKHL+F Sbjct: 157 LGLIFMKGNTITETEVWDFLRRLGVYPTKKHLIF 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,201,220 Number of Sequences: 219361 Number of extensions: 1731477 Number of successful extensions: 4629 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4486 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4628 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
