>RL28_DROME (Q9VZS5) 60S ribosomal protein L28|
          Length = 144

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
 Frame = -1

Query: 421 NVHSYKYSGXANKKXVTVQPAAEKX-MTVVLSTXKSKKQNKPAAFTHKTVMRKEFRKMAK 245
           +V SY+YSG  +KK + V PAA+K   T VL   K K   +PA  T +   +   R+  K
Sbjct: 38  SVSSYRYSGIVHKKTLGVVPAADKKGFTAVLK--KGKYAQRPAKNTVRVDFKAGPRRSLK 95

Query: 244 AVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVKK 128
            +KN +  + YR DLT+ AL R SAV RS + A    KK
Sbjct: 96  KLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKK 134

>RL28_MOUSE (P41105) 60S ribosomal protein L28|
          Length = 136

 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 31/86 (36%), Positives = 50/86 (58%)
 Frame = -1

Query: 415 HSYKYSGXANKKXVTVQPAAEKXMTVVLSTXKSKKQNKPAAFTHKTVMRKEFRKMAKAVK 236
           +S++Y+G  ++K V V+PAA+    VV+   +S  Q KPA    +T + K  R    +++
Sbjct: 35  NSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSG-QRKPATSYVRTTINKNARATLSSIR 93

Query: 235 NQVSDNYYRPDLTKPALARLSAVYRS 158
           + +  N YRPDL   A+ R SA+ RS
Sbjct: 94  HMIRKNKYRPDLRMAAIRRASAILRS 119

>RL28_HUMAN (P46779) 60S ribosomal protein L28|
          Length = 136

 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 31/86 (36%), Positives = 50/86 (58%)
 Frame = -1

Query: 415 HSYKYSGXANKKXVTVQPAAEKXMTVVLSTXKSKKQNKPAAFTHKTVMRKEFRKMAKAVK 236
           +S++Y+G  ++K V V+PAA+    VV+   +S  Q KPA    +T + K  R    +++
Sbjct: 35  NSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSG-QRKPATSYVRTTINKNARATLSSIR 93

Query: 235 NQVSDNYYRPDLTKPALARLSAVYRS 158
           + +  N YRPDL   A+ R SA+ RS
Sbjct: 94  HMIRKNKYRPDLRMAAIRRASAILRS 119

>RL28_SPOFR (Q962T2) 60S ribosomal protein L28|
          Length = 139

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
 Frame = -1

Query: 421 NVHSYKYSGXANKKXV-TVQPAAEKXMTVVLSTXKSKKQNKPAAFTHKTVMRKEFRKMAK 245
           N++SY+Y+G   KK V  V+    K  TVV    K+K  NKPA    K  +R++F+  A+
Sbjct: 36  NLNSYRYNGLIQKKAVGVVENPDRKGFTVVYK--KAKATNKPA----KNAVRRQFKAGAR 89

Query: 244 A----VKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKS 140
                VK  +  N+YR DL+K  L R SA+ RS +  K+
Sbjct: 90  RSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIKA 128

>RL28_RAT (P17702) 60S ribosomal protein L28|
          Length = 136

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 28/86 (32%), Positives = 47/86 (54%)
 Frame = -1

Query: 415 HSYKYSGXANKKXVTVQPAAEKXMTVVLSTXKSKKQNKPAAFTHKTVMRKEFRKMAKAVK 236
           +S++Y+G  ++K V V+   +    VV+   +S  Q KPA    +T + K  R    +++
Sbjct: 35  NSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSG-QRKPATSYVRTTINKNARATLSSIR 93

Query: 235 NQVSDNYYRPDLTKPALARLSAVYRS 158
           + +  N YRPDL   A+ R SA+ RS
Sbjct: 94  HMIRKNKYRPDLRMAAIRRASAILRS 119

>RL28_CAEEL (Q21930) 60S ribosomal protein L28|
          Length = 125

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 34/97 (35%), Positives = 50/97 (51%)
 Frame = -1

Query: 418 VHSYKYSGXANKKXVTVQPAAEKXMTVVLSTXKSKKQNKPAAFTHKTVMRKEFRKMAKAV 239
           V+S KYSG ANK  + V  AA+    VV+ST K++K     A T  T+ +     + +  
Sbjct: 36  VNSPKYSGLANKHAIDVSAAAK---GVVVST-KNEKGRPAKAVTTSTLSKTPVASVRRLA 91

Query: 238 KNQVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVKK 128
           KN   + +      K A  R +A+ RS QV K+ V+K
Sbjct: 92  KNAGFNKF-----NKLAQRRAAAIVRS-QVKKAKVQK 122

>H1A_XENLA (P06892) Histone H1A|
          Length = 209

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 24/89 (26%), Positives = 37/89 (41%)
 Frame = -1

Query: 391 ANKKXVTVQPAAEKXMTVVLSTXKSKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYY 212
           A KK   +   A+K       T KS K+ K  +   K+   K+ +K AKA K+       
Sbjct: 122 AAKKKAPLAAEAKKPAAAAKKTAKSPKKPKKVSAAAKSP--KKLKKPAKAAKSPAKKTAV 179

Query: 211 RPDLTKPALARLSAVYRSLQVAKSGVKKK 125
           +P +   + A+  A    +  AK    KK
Sbjct: 180 KPKVAAKSPAKAKAAKPKVAKAKKAAPKK 208

>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von|
            Willebrand antigen II]
          Length = 2813

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -3

Query: 290  HPQDCHAQGVPQDGQGCQEPGXXXXXXXXXXXACSCKTERSLPQPPGCQVWCQE 129
            H Q+CH  GV    + CQEPG           + +       P+PP    +C +
Sbjct: 1221 HCQNCHCDGVNLTCEACQEPGGLVAPPTDAPVSSTTPYVEDTPEPPLHNFYCSK 1274

>FINC_PLEWA (Q91289) Fibronectin (FN) (Fragment)|
          Length = 1328

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -1

Query: 370 VQPAAEKXMTVVLSTXK--SKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYYRPDLT 197
           ++P AE  +TV   T +  S   +KP   THKTV+ K  +     V++      + P  T
Sbjct: 445 LKPGAEYIITVYAVTGRGDSPASSKPVTVTHKTVVDKPTQLQVTDVQDHSIQVRWMPSST 504

Query: 196 KPALARLSAVYRSLQVAKSGV 134
            P        YR   V KSGV
Sbjct: 505 -PVTG-----YRVTSVPKSGV 519

>RL23A_TRYBB (P41165) 60S ribosomal protein L23a (L25)|
          Length = 164

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
 Frame = -1

Query: 334 LSTXKSKK---QNKPAAF-----THKTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALAR 179
           L+T K+ K   +N    F      +KT ++K  RK+ + VK    +   RPD  K A  R
Sbjct: 89  LTTDKAMKKIEENNTLTFIVDSRANKTEIKKAIRKLYQ-VKTVKVNTLIRPDGLKKAYIR 147

Query: 178 LSAVYRSLQVA 146
           LSA Y +L  A
Sbjct: 148 LSASYDALDTA 158

>MYB_HUMAN (P10242) Myb proto-oncogene protein (C-myb)|
          Length = 640

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 76  THPQNK-LTSPSVLTACSSS*HQTWQPGGCGKLRSVLQEQAWSSQA 210
           T P+N+ L SP  L  CSS    TW+P  CGK+    ++   SSQA
Sbjct: 590 TVPKNRSLASP--LQPCSS----TWEPASCGKME---EQMTSSSQA 626

>H103_CHICK (P08285) Histone H1.03|
          Length = 223

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
 Frame = -1

Query: 385 KKXVTVQPAA-----EKXMTVVLSTXKSKKQ----NKPAAFTHKTVMRKEFRKMAKAVKN 233
           KK    +PAA     +K + V  S  K+KK      K AA + K V +    K A AVK+
Sbjct: 132 KKPAAKKPAAAAKKPKKAVAVKKSPKKAKKPAAAATKKAAKSPKKVTKAAKPKKAVAVKS 191

Query: 232 QVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVKKK 125
                  +P   KP   +  A     +  K+  KKK
Sbjct: 192 PAKAKAVKPKAAKPKATKPKAA----KAKKAAPKKK 223

>H1C_CHITE (P40277) Histone H1C|
          Length = 221

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
 Frame = -1

Query: 364 PAAEKXMTVVLSTXKSKKQN--KPAAF----THKTVMRKEFRKMAKAVKNQVSDNYYRPD 203
           PAA K   VV  T K  K+   KP+        KT+ +K     A  +K  V+    +P 
Sbjct: 111 PAAAKKEKVVKKTEKKPKKAAAKPSKAGEKKVKKTIAKKPKAATATKIKKPVAKTTKKPA 170

Query: 202 LTKPALARLSAVYRSLQVAKSGVKKK 125
             KPA  + +   ++    K+  K K
Sbjct: 171 AAKPAAKKAAPKPKAAPKPKAAPKPK 196

>H13_GLYBA (P40265) Histone H1-III|
          Length = 228

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
 Frame = -1

Query: 364 PAAEKXMTVVLSTXKSKKQNKPAAFT--------HKTVMRKEFRKMAKAVKNQVSDNYYR 209
           PAA K   V  +  K+  + KP A           K++ +K     A  VK  V+ +  +
Sbjct: 112 PAAAKKEKVAKTPKKAAGEKKPQAAAKPKKALEKKKSIAKKPKAATATKVKKPVAKSTKK 171

Query: 208 PDLTKPALARLSAVYRSLQVAKSGVKKK 125
           P   KPA  + +   ++    K+  K K
Sbjct: 172 PAAVKPAAKKAAPKPKAAPKPKAATKPK 199

>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)|
          Length = 2813

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = -3

Query: 290  HPQDCHAQGVPQDGQGCQEPGXXXXXXXXXXXACSCKTERSLPQPP 153
            H Q CH  GV    Q C+EPG             +       P+PP
Sbjct: 1221 HCQICHCDGVNFTCQACREPGSLVVPPTEGPIGSTTSYVEDTPEPP 1266

>H1_PEA (P08283) Histone H1 (PsH1b) (PsH1b-40)|
          Length = 265

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 10/104 (9%)
 Frame = -1

Query: 412 SYKYSGXANKKXVTVQPAAEKXMTVVLSTXKSKKQNKPAAFTHKTVMRKEFRKMAKAVKN 233
           S+K S  A K      PA  K      +  KS K    A    K V++ +    AKAV  
Sbjct: 125 SFKLSAAAKK------PAVAKPKAKTAAKAKSVKAKPAAKPKAKAVVKPKVASKAKAVAA 178

Query: 232 QVSDNYYRPDL----TKPALARLSAV------YRSLQVAKSGVK 131
           +      +P      TKP  A+  AV       +  +VAK+ VK
Sbjct: 179 KPKKAAAKPKTVAAKTKPTAAKPKAVVKPKSKVKPAKVAKTSVK 222


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,075,567
Number of Sequences: 219361
Number of extensions: 741632
Number of successful extensions: 1988
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1983
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)