ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13j01 |
|---|---|
| Clone Library Name | barley_pub |
>CY11_SOLTU (P25076) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC13III) Length = 320 Score = 225 bits (573), Expect = 1e-58 Identities = 109/127 (85%), Positives = 112/127 (88%) Frame = -1 Query: 632 LITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDG 453 LITKARH+GQNYVFALLT Y DPPAGV IREGLHYNPYFPGGAIAMPKML DGA+EYEDG Sbjct: 194 LITKARHNGQNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDG 253 Query: 452 TPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRK 273 PATEAQMGKDVVSFLSWAAEPEMEERKLMG KWIF AYYRR+RWSVLKSRK Sbjct: 254 IPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRK 313 Query: 272 LVLDVVN 252 LVLDVVN Sbjct: 314 LVLDVVN 320
>CY12_SOLTU (P29610) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC18I) (Fragment) Length = 260 Score = 224 bits (571), Expect = 2e-58 Identities = 108/127 (85%), Positives = 112/127 (88%) Frame = -1 Query: 632 LITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDG 453 LITKARH+GQNYVFALLT Y DPPAGV IREGLHYNPYFPGGAIAMPKML DGA+EYEDG Sbjct: 134 LITKARHNGQNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDG 193 Query: 452 TPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRK 273 PATEAQMGKDVVSFL+WAAEPEMEERKLMG KWIF AYYRR+RWSVLKSRK Sbjct: 194 VPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRK 253 Query: 272 LVLDVVN 252 LVLDVVN Sbjct: 254 LVLDVVN 260
>CY1_NEUCR (P07142) Cytochrome c1, heme protein, mitochondrial precursor| Length = 332 Score = 149 bits (377), Expect = 5e-36 Identities = 70/125 (56%), Positives = 91/125 (72%), Gaps = 1/125 (0%) Frame = -1 Query: 632 LITKARHDGQNYVFALLTGYHD-PPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYED 456 LI KARH G +Y+F+LLTGY D PPAG + GL++NPYFPG IAM ++L DG ++YED Sbjct: 188 LIVKARHGGCDYIFSLLTGYPDEPPAGASVGAGLNFNPYFPGTGIAMARVLYDGLVDYED 247 Query: 455 GTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSR 276 GTPA+ +QM KDVV FL+WAAEPEM++RK MG+K + Y +R +W+ LKSR Sbjct: 248 GTPASTSQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTSVLFALSVYVKRYKWAWLKSR 307 Query: 275 KLVLD 261 K+V D Sbjct: 308 KIVYD 312
>CY1_YEAST (P07143) Cytochrome c1, heme protein, mitochondrial precursor| Length = 309 Score = 142 bits (357), Expect = 1e-33 Identities = 65/125 (52%), Positives = 89/125 (71%), Gaps = 1/125 (0%) Frame = -1 Query: 632 LITKARHDGQNYVFALLTGYHD-PPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYED 456 LI KARH G +Y+F+LLTGY D PPAGV + G +YNPYFPGG+IAM ++L D +EYED Sbjct: 179 LIVKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYED 238 Query: 455 GTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSR 276 GTPAT +QM KDV +FL+W AEPE +ERK +G+K + + ++ +W+ +K+R Sbjct: 239 GTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTR 298 Query: 275 KLVLD 261 K V + Sbjct: 299 KFVFN 303
>CY1_KLULA (Q00988) Cytochrome c1, heme protein, mitochondrial precursor| Length = 292 Score = 142 bits (357), Expect = 1e-33 Identities = 65/125 (52%), Positives = 89/125 (71%), Gaps = 1/125 (0%) Frame = -1 Query: 632 LITKARHDGQNYVFALLTGY-HDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYED 456 LI KARH G +Y+FALLTGY +PPAGV + G +YNPYFPGG+IAM ++L D +EYED Sbjct: 164 LIVKARHGGPDYIFALLTGYPEEPPAGVVLPPGANYNPYFPGGSIAMGRVLFDDLVEYED 223 Query: 455 GTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSR 276 GTPAT +QM KDV +FL W +EPE +ERK +G+K + + ++ +W+ +KSR Sbjct: 224 GTPATTSQMAKDVTTFLHWCSEPEHDERKRLGLKAMIVLSSLYLLSVWVKKFKWASIKSR 283 Query: 275 KLVLD 261 K+V + Sbjct: 284 KIVFN 288
>CY1_MOUSE (Q9D0M3) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 138 bits (347), Expect = 2e-32 Identities = 64/120 (53%), Positives = 84/120 (70%) Frame = -1 Query: 629 ITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGT 450 I +ARH G++YVF+LLTGY +PP GV +REGL++NPYFPG AI M + +EY+DGT Sbjct: 200 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYTEVLEYDDGT 259 Query: 449 PATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRKL 270 PAT +Q+ KDV +FL WA+EPE + RK MG+K + +R +WSVLKSRKL Sbjct: 260 PATMSQVAKDVATFLRWASEPEHDHRKRMGLKMLLMMGLLLPLTYAMKRHKWSVLKSRKL 319
>CY1_HUMAN (P08574) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 138 bits (347), Expect = 2e-32 Identities = 64/120 (53%), Positives = 85/120 (70%) Frame = -1 Query: 629 ITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGT 450 I +ARH G++YVF+LLTGY +PP GV +REGL++NPYFPG AIAM + +E++DGT Sbjct: 200 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGT 259 Query: 449 PATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRKL 270 PAT +Q+ KDV +FL WA+EPE + RK MG+K + +R +WSVLKSRKL Sbjct: 260 PATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319
>CY1_BOVIN (P00125) Cytochrome c1, heme protein, mitochondrial (Cytochrome| c-1) Length = 241 Score = 137 bits (346), Expect = 2e-32 Identities = 64/120 (53%), Positives = 85/120 (70%) Frame = -1 Query: 629 ITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGT 450 I +ARH G++YVF+LLTGY +PP GV +REGL++NPYFPG AI M + + +E++DGT Sbjct: 116 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGT 175 Query: 449 PATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRKL 270 PAT +Q+ KDV +FL WAAEPE + RK MG+K + +R +WSVLKSRKL Sbjct: 176 PATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKL 235
>CY1_EUGGR (P20114) Cytochrome c1, heme protein| Length = 243 Score = 119 bits (298), Expect = 8e-27 Identities = 62/128 (48%), Positives = 74/128 (57%), Gaps = 1/128 (0%) Frame = -1 Query: 632 LITKARHDGQNYVFALLTGYHDP-PAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYED 456 +IT ARH G +Y++ALLTGY P P GVQ+ YNPYF GG I MP L D IEYED Sbjct: 113 VITNARHGGVDYIYALLTGYGRPVPGGVQLSTTQWYNPYFHGGIIGMPPPLTDDMIEYED 172 Query: 455 GTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSR 276 GTPA+ QM KDV FL W + P +ERKL+G K I YY R + +SR Sbjct: 173 GTPASVPQMAKDVTCFLEWCSNPWWDERKLLGYKTIATLAVIAVSSGYYNRFLSGLWRSR 232 Query: 275 KLVLDVVN 252 +L N Sbjct: 233 RLAFRPFN 240
>CYBC_BRAJA (P51131) Cytochrome b/c1 [Contains: Cytochrome b; Cytochrome c1]| Length = 687 Score = 100 bits (249), Expect = 4e-21 Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 1/90 (1%) Frame = -1 Query: 626 TKARHDGQNYVFALLTGYHDP-PAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGT 450 T+ + G +YV A+L G+ + P GV I EG +YN YFPG AI MPK L DG + Y+DG+ Sbjct: 572 TQYQEQGPDYVSAVLQGFEEKVPEGVTIPEGSYYNKYFPGHAIKMPKPLSDGQVTYDDGS 631 Query: 449 PATEAQMGKDVVSFLSWAAEPEMEERKLMG 360 PAT AQ KDV +FL W AEP ME RK +G Sbjct: 632 PATVAQYSKDVTTFLMWTAEPHMEARKRLG 661
>CY1_RHORU (P23135) Cytochrome c1 precursor| Length = 272 Score = 97.4 bits (241), Expect = 3e-20 Identities = 50/109 (45%), Positives = 66/109 (60%), Gaps = 16/109 (14%) Frame = -1 Query: 632 LITKARHDGQNYVFALLTGYHDPPAG----------------VQIREGLHYNPYFPGGAI 501 L+ KAR G NY+++LL GY G V E ++N YFPG AI Sbjct: 139 LLAKARPGGPNYIYSLLEGYASDSPGEPAEWWVKQQQEKGLEVAFNEAKYFNDYFPGHAI 198 Query: 500 AMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVK 354 +MP LMD I YEDGT AT+ QM +DVV++L+WAAEPE++ RK +G+K Sbjct: 199 SMPPPLMDDLITYEDGTAATKDQMAQDVVAYLNWAAEPELDARKSLGLK 247
>CY1_RHOVI (P81379) Cytochrome c1 precursor| Length = 282 Score = 94.4 bits (233), Expect = 3e-19 Identities = 42/91 (46%), Positives = 57/91 (62%) Frame = -1 Query: 632 LITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDG 453 + T+ +G +Y+ ALL GY DPP ++ +G YN YFPG I M + DG + Y DG Sbjct: 162 IFTQYNENGVDYIVALLNGYEDPPERFKVPDGSFYNKYFPGHIIGMTPPIADGLVTYGDG 221 Query: 452 TPATEAQMGKDVVSFLSWAAEPEMEERKLMG 360 TP T+ Q KDV +FL WAAEP ++ RK +G Sbjct: 222 TPETQLQYSKDVAAFLMWAAEPTLDVRKRIG 252
>CY1_PARDE (P13627) Cytochrome c1 precursor| Length = 450 Score = 71.2 bits (173), Expect = 2e-12 Identities = 40/109 (36%), Positives = 53/109 (48%) Frame = -1 Query: 608 GQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQM 429 G Y+ A+LTGY D + L++N F G I M L D + YEDGTPAT QM Sbjct: 337 GPEYIHAVLTGY-DGEEKEEAGAVLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQM 395 Query: 428 GKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLK 282 DV +FL W AEP+M +RK +G + + W +K Sbjct: 396 ATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLYLTNKKLWQPIK 444
>CY1_RHOSH (Q02760) Cytochrome c1 precursor| Length = 285 Score = 65.1 bits (157), Expect = 2e-10 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 21/133 (15%) Frame = -1 Query: 608 GQNYVFALLTGY-HDPPAGVQIRE--GLHYNPYFPGGA------------------IAMP 492 G Y++++LTG+ +PP + E G +YN F G+ IAMP Sbjct: 149 GPEYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVPDTCKDANGVKTTAGSWIAMP 208 Query: 491 KMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAY 312 LMD +EY DG A+ M +DV +FL WAAEP++ RK G + Sbjct: 209 PPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTVLSVLLYL 268 Query: 311 YRRMRWSVLKSRK 273 + W+ +K +K Sbjct: 269 TNKRLWAGVKGKK 281
>CY1_RHOCA (P08501) Cytochrome c1 precursor| Length = 279 Score = 63.9 bits (154), Expect = 4e-10 Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 19/131 (14%) Frame = -1 Query: 608 GQNYVFALLTGYHD-PPAGVQIREGLHYNPYFPGGAIA------------------MPKM 486 G Y++ + G+ + P + +G +YN F G + MP Sbjct: 148 GPEYIYNYVIGFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDAAGVKITHGSWARMPPP 207 Query: 485 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYR 306 L+D + YEDGTPAT QM +DV +FL WAAEP++ RK MG+ + Sbjct: 208 LVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLYLTN 267 Query: 305 RMRWSVLKSRK 273 + W+ K K Sbjct: 268 KRLWAPYKGHK 278 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,281,585 Number of Sequences: 219361 Number of extensions: 1951980 Number of successful extensions: 4845 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4837 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
