>BP73_ORYSA (Q8L4E7) SAP-like protein BP-73 (OsBP-73) (Riaa1)|
          Length = 375

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
 Frame = -2

Query: 480 IARDSPKAPGRTRKPSSPADTLEEAGTKMQPYEELHQD------GQPNLEDMKVPELRDM 319
           I+ D P A   T +PS   D        +   +E H        G P+L  +KV ELR++
Sbjct: 292 ISDDEPDASD-TDEPSGEYDEPSLQIPSVPIIDESHDTTLKSSLGGPDLSTLKVTELREL 350

Query: 318 ARERGMRGYSKLKKGELIDRL 256
           A+ RG++GYSK+KK +L++ L
Sbjct: 351 AKSRGIKGYSKMKKNDLVELL 371

>FLIF_TREPA (O83414) Flagellar M-ring protein|
          Length = 567

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = -2

Query: 480 IARDSPKAPGRTRKPSSPADTLEEAGTKMQPYEELHQDGQPNLEDMKVPELRDMARERGM 301
           I +D+P  P    +      ++ E  T       L+ +G P +E    P  +DM+ + G+
Sbjct: 295 IRQDNPDTPWDDSQVVPSVTSISETATTTWQGTGLNPEGPPGVEGQTPPAYKDMSNQVGL 354

Query: 300 RGYSKLKKGELIDR 259
              S +KK E I +
Sbjct: 355 SNQSVVKKQEAISK 368

>MYCD_MOUSE (Q8VIM5) Myocardin (SRF cofactor protein) (Basic SAP coiled-coil|
           transcription activator 2)
          Length = 935

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = -2

Query: 360 PNLEDMKVPELRDMARERGMRGYSKLKKGELIDRLR 253
           PNL+D+KV ELR   R RG+       K  L+DRLR
Sbjct: 378 PNLDDLKVSELRQQLRIRGLPVSG--TKTALVDRLR 411

>MYCD_RAT (Q8R5I7) Myocardin|
          Length = 938

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = -2

Query: 360 PNLEDMKVPELRDMARERGMRGYSKLKKGELIDRLR 253
           PNL+D+KV ELR   R RG+       K  L+DRLR
Sbjct: 381 PNLDDLKVSELRQQLRIRGLPVSG--TKTALVDRLR 414

>RHO_MYCLE (P45835) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 610

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -2

Query: 357 NLEDMKVPELRDMARERGMRGYSKLKKGELI 265
           +L  M +PELR +A + G++G S ++K ELI
Sbjct: 40  SLSTMVLPELRALANQAGVKGTSGMRKSELI 70

>AKAP2_MOUSE (O54931) A-kinase anchor protein 2 (Protein kinase A-anchoring|
           protein 2) (PRKA2) (AKAP-2) (AKAP expressed in kidney
           and lung) (AKAP-KL)
          Length = 885

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
 Frame = -2

Query: 558 YSPSRMAVKKHSKEELIEFFG------AIQAAIARDSPKAPGRTRKPSS----PADTLEE 409
           YSPS       S ++ +E+        AIQ AIA    KA   T K  S    P  T+EE
Sbjct: 570 YSPSSTLGDSPSVDDPLEYQAGLLVQNAIQQAIAEQVDKAEAHTSKEGSEQQEPEATVEE 629

Query: 408 AGTKMQPYEELHQDGQPNLEDMKVPELRDM------ARERGMR 298
           AG++    E+      P      V E RD+      A +R +R
Sbjct: 630 AGSQTPGSEKPQGMFAPPQVSSPVQEKRDILPKNLPAEDRALR 672

>RHO_BACSU (Q03222) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 427

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -2

Query: 357 NLEDMKVPELRDMARERGMRGYSKLKKGELI 265
           +LE+MK+ EL ++AR   +  YSKL K ELI
Sbjct: 8   SLENMKLKELYELARHYKISYYSKLTKKELI 38

>6P21_YEAST (P40433) 6-phosphofructo-2-kinase 1 (EC 2.7.1.105)|
           (Phosphofructokinase 2 I) (6PF-2-K 1)
          Length = 827

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = -2

Query: 555 SPSRMAVKKHSKEELIEFFGAIQAAIARDSP-----KAPGRTRKPSSPADTLEEAGTKMQ 391
           S  ++  +K   +EL +     Q     D+P      +PG T + ++P+D+ E + T ++
Sbjct: 43  SDDKIDAEKGPHDELSKHLPLFQKRPLSDTPISSNWNSPGITEE-NTPSDSPENSATNLK 101

Query: 390 PYEELHQDGQPNLEDMKVP 334
               LH + +  L++ K+P
Sbjct: 102 SLHRLHINDETQLKNAKIP 120

>MYCD_HUMAN (Q8IZQ8) Myocardin|
          Length = 938

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = -2

Query: 360 PNLEDMKVPELRDMARERGMRGYSKLKKGELIDRLR 253
           PNL+D+KV ELR   R RG+       K  L+DRLR
Sbjct: 369 PNLDDLKVSELRQQLRIRGLPVSG--TKTALMDRLR 402

>RHO_MYCTU (P66028) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 602

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 357 NLEDMKVPELRDMARERGMRGYSKLKKGELI 265
           +L  M +PELR +A   G++G S ++K ELI
Sbjct: 36  SLATMVLPELRALANRAGVKGTSGMRKNELI 66

>RHO_MYCBO (P66029) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 602

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 357 NLEDMKVPELRDMARERGMRGYSKLKKGELI 265
           +L  M +PELR +A   G++G S ++K ELI
Sbjct: 36  SLATMVLPELRALANRAGVKGTSGMRKNELI 66

>OPN4_PHOSU (Q5XXP2) Melanopsin (Opsin-4)|
          Length = 469

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 175 AKQPALA-SACSYLGEEGLLIIRRPGTPQTINQLPFLQLGVTSHP 306
           A QPA   S+C    E+G+  ++ P +PQ   QLP L LG+   P
Sbjct: 427 AAQPASGQSSCGQNLEDGM--VKAPSSPQAKGQLPSLDLGMQDAP 469

>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting|
            gene 1) (Rig-1)
          Length = 1366

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 13/116 (11%)
 Frame = -2

Query: 630  LHRAPRRGSLPCSSSLTVRAEANGYSPSRMAVKKHSKEELIEFFGAIQAAIARDSP---- 463
            LH+ PRR  L  SS L+V         S+ A+  H    +    G + +  A  SP    
Sbjct: 1173 LHQMPRRVPLGPSSPLSV---------SQPALSSHDGRPVGLGAGPVLSYHASPSPVPST 1223

Query: 462  --KAPGRTRK-------PSSPADTLEEAGTKMQPYEELHQDGQPNLEDMKVPELRD 322
               APGRTR+       P            K  PY   H  G      +  PELRD
Sbjct: 1224 ASSAPGRTRQVTGEMTPPLHGHRARIRKKPKALPYRREHSPGDLPPPPLPPPELRD 1279

>DPO4_VIBPA (Q87MB4) DNA polymerase IV (EC 2.7.7.7) (Pol IV)|
          Length = 354

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 384 EELHQDGQPNLEDMKVPELRDMARERGMRGYSKLKKGELID 262
           E+LHQ G    ED+K  + R++ R+ G +G S  K+   ID
Sbjct: 194 EKLHQAGFYLCEDIKNSDYRELLRQFGRQGASLWKRSHGID 234

>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament|
            protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1072

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
 Frame = -2

Query: 624  RAPRRGSLPCSSSLTVRAEANGYSPSRMAVKKHSKEELIEFFGAIQAAIARDSPKAPGRT 445
            ++P     P  +     A++   + S + VK   K +     GA   A A+   KA    
Sbjct: 731  KSPAEAKSPAEAKSPAEAKSPAEAKSPVEVKSPEKAKSPVKEGAKSLAEAKSPEKAKSPV 790

Query: 444  R---KPSSPADTLEEAGTKMQPYEELHQDGQPNLEDMKVPELRDMARERGMR 298
            +   KP +   + E+A + M+  EE     +    D+K PE +  A+E   R
Sbjct: 791  KEEIKPPAEVKSPEKAKSPMK--EEAKSPEKAKTLDVKSPEAKTPAKEEAKR 840

>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
            transcription complex cytosolic component) (NF-ATc1)
            (NF-ATc)
          Length = 943

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -2

Query: 468  SPKAPGRTRKPSSPADTLEE-----AGTKMQPYEELHQDGQPNLEDMKVPELRD 322
            SP  P  T +P     T+       AG ++ P  E+H+DG PNL  + V   R+
Sbjct: 865  SPACPPATGRPQHLPSTVRRDESPTAGPRLLP--EVHEDGSPNLAPIPVTVKRE 916

>NU1M_RABIT (O79427) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 318

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
 Frame = +2

Query: 251 PLRRSISSPFFSLE*PLIPLSLAMSLSSGTFMSSKFGCPSWCSSSYGCIFVPASSSVSA- 427
           PLR   SSP   +  P + L+LA+S+    ++      P   + + G +F+ A+SS++  
Sbjct: 60  PLRPLTSSPLLFIIAPTLALTLALSM----WLPIPMPYP-LVNLNMGILFILATSSLAVY 114

Query: 428 -------GDDGFLVLPGALGESLAMAAWMAPKNSMSSSLLCFLTAILEGEYPLASALTVN 586
                    +    L GAL    A+A  ++ + +++  LLC L  ++ G + L+S +T  
Sbjct: 115 SILWSGWASNSKYALFGAL---RAVAQTISYEVTLAIILLCIL--LMNGSFTLSSLITTQ 169

Query: 587 E 589
           E
Sbjct: 170 E 170


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,372,745
Number of Sequences: 219361
Number of extensions: 1989152
Number of successful extensions: 6937
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6933
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)