ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13i15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY614716.1| Triticum aestivum mitochondrial ATP synthase prec... 567 e-159
2ref|XM_464007.1| Oryza sativa (japonica cultivar-group), mRNA 357 2e-95
3dbj|AK066913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 357 2e-95
4gb|AY103737.1| Zea mays PCO126068 mRNA sequence 258 1e-65
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 176 3e-41
6dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic D... 176 3e-41
7emb|X74296.1|GMATPSYNS G.max gene for ATP synthase subunit 44 0.30
8gb|AC068913.22| Mus musculus strain 129/Sv clone ct7-362c13 map ... 42 1.2
9gb|AC025366.11| Homo sapiens chromosome 8, clone RP11-238I10, co... 42 1.2
10gb|AC068911.38| Mus musculus strain 129/Sv chromosome 2 clone ct... 42 1.2
11gb|AC112719.4| Homo sapiens BAC clone RP11-630D6 from 4, complet... 42 1.2
12gb|AC093599.6| Homo sapiens BAC clone RP11-285C1 from 4, complet... 42 1.2
13gb|AC155940.6| Mus musculus 10 BAC RP24-94O5 (Roswell Park Cance... 42 1.2
14emb|BX908734.3| Mouse DNA sequence from clone RP23-266F3 on chro... 42 1.2
15gb|AC090819.7| Homo sapiens chromosome 8, clone CTD-2544L4, comp... 42 1.2
16dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 42 1.2
17emb|AL844146.2| Mouse DNA sequence from clone RP24-89J1 on chrom... 42 1.2
18emb|AL845273.7| Mouse DNA sequence from clone RP23-334D15 on chr... 42 1.2
19dbj|AP003547.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.2
20dbj|AP003693.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.2
21gb|AC068140.4| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 4.8
22ref|XM_748618.1| Aspergillus fumigatus Af293 hypothetical protei... 40 4.8
23emb|Z68012.1|CET24D5 Caenorhabditis elegans Cosmid T24D5, comple... 40 4.8
24gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete se... 40 4.8
25emb|AL590308.8| Human DNA sequence from clone RP11-501K14 on chr... 40 4.8
26emb|AL445470.5| Human DNA sequence from clone RP11-421L10 on chr... 40 4.8
27emb|AL136090.12| Human DNA sequence from clone RP11-97N19 on chr... 40 4.8
28gb|AY046926.1| Lactococcus lactis subsp. cremoris YdjD (ydjD), N... 40 4.8
29dbj|AK128488.1| Homo sapiens cDNA FLJ46636 fis, clone TRACH3002188 40 4.8
30gb|AC104664.2| Homo sapiens BAC clone RP11-724H6 from 4, complet... 40 4.8
31gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome... 40 4.8
32gb|AC074395.1|AC074395 Arabidopsis thaliana chromosome 3 BAC T8G... 40 4.8
33ref|NM_001010913.2| Homo sapiens chromosome 1 open reading frame... 40 4.8
34dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
35dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
36gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromoso... 40 4.8
37emb|AJ575922.1|MSU575922 Monomorium subopacum satellite DNA, clo... 40 4.8
38emb|AJ575920.1|MSU575920 Monomorium subopacum satellite DNA, clo... 40 4.8
39emb|AJ575919.1|MSU575919 Monomorium subopacum satellite DNA, clo... 40 4.8
40emb|AJ012585.1|TTH012585 Tetrahymena thermophila macronuclear ge... 40 4.8 
>gb|AY614716.1| Triticum aestivum mitochondrial ATP synthase precursor mRNA,
           complete cds; nuclear gene for mitochondrial product
          Length = 717

 Score =  567 bits (286), Expect = e-159
 Identities = 340/358 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgaccctccattgcttcaacaacttccttcttaagttccgtcagctcagctttggca 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 647 agttgaccctccattgcttcaacaacttccttcttgagttccgtcagctcagctttggca 588

                                                                       
Query: 61  atttgcatttcaagttcttcctcaatcttgggaagatcctccttccgaaagccaagcttt 120
           | || ||||||||| |  ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 587 agttccatttcaagattctcctcaatcttgggaagatcctccttccgaatgccaagcttt 528

                                                                       
Query: 121 ttgtttatcttgtcaaactctgccaagagaagacccatgttcttcctgtcattcctcata 180
           ||||||||||||||||||||||||||||| |||  |||||||||| ||||| |||||| |
Sbjct: 527 ttgtttatcttgtcaaactctgccaagaggagattcatgttcttcttgtcactcctcaga 468

                                                                       
Query: 181 agaggcttcttaatctccttctcaattttctcgagagcttccatcatcatatcctcaata 240
           |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 467 agaggcttcttaatgtccttctcaactttctcgagagcttccatcatcatatcctcaata 408

                                                                       
Query: 241 cccatatcatctataagtccattctttttcctgagctgctgaagggtatccaagtacgtc 300
           ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 407 cccatatcatctataagtccactctttttcctgagttgctgaagggtatccaagtacgtc 348

                                                                     
Query: 301 ctagcatcagggatgcccttcgtgaaagtctcaatagtatatttaattctctgagaat 358
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cttgcatcagggatgcccttcgtgaaagtctcaatagtatatttaattctctgagaat 290
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>ref|XM_464007.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1126

 Score =  357 bits (180), Expect = 2e-95
 Identities = 309/352 (87%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgaccctccattgcttcaacaacttccttcttaagttccgtcagctcagctttggca 60
           |||||| |||||||||||||||||  |||||||||||| ||||||||||||  |||||||
Sbjct: 738 agttgaacctccattgcttcaacacattccttcttaagctccgtcagctcacttttggca 679

                                                                       
Query: 61  atttgcatttcaagttcttcctcaatcttgggaagatcctccttccgaaagccaagcttt 120
           |||| || |||||| ||||||||||||||||||||||||||||| || |  |||||||||
Sbjct: 678 atttccaattcaagctcttcctcaatcttgggaagatcctccttgcggattccaagcttt 619

                                                                       
Query: 121 ttgtttatcttgtcaaactctgccaagagaagacccatgttcttcctgtcattcctcata 180
           ||||||||||| ||||||||||||||||| |||||||| |||||| ||||| |||||| |
Sbjct: 618 ttgtttatcttctcaaactctgccaagaggagacccatattcttcttgtcactcctcaga 559

                                                                       
Query: 181 agaggcttcttaatctccttctcaattttctcgagagcttccatcatcatatcctcaata 240
           || |||||||||||||||||||||| |||||| || ||||||||||||||| |||||  |
Sbjct: 558 agtggcttcttaatctccttctcaactttctcaagggcttccatcatcatagcctcagca 499

                                                                       
Query: 241 cccatatcatctataagtccattctttttcctgagctgctgaagggtatccaagtacgtc 300
           ||||||||||||||||| ||| ||||| |||||| || |||||| |||| |||||| |||
Sbjct: 498 cccatatcatctataaggccactctttatcctgatctcctgaagagtattcaagtaagtc 439

                                                               
Query: 301 ctagcatcagggatgcccttcgtgaaagtctcaatagtatatttaattctct 352
           |  ||||||||||||||||| || || || || || ||||||||||| ||||
Sbjct: 438 cgtgcatcagggatgccctttgtaaaggtgtcgatggtatatttaatcctct 387
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>dbj|AK066913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B14, full
           insert sequence
          Length = 1126

 Score =  357 bits (180), Expect = 2e-95
 Identities = 309/352 (87%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgaccctccattgcttcaacaacttccttcttaagttccgtcagctcagctttggca 60
           |||||| |||||||||||||||||  |||||||||||| ||||||||||||  |||||||
Sbjct: 738 agttgaacctccattgcttcaacacattccttcttaagctccgtcagctcacttttggca 679

                                                                       
Query: 61  atttgcatttcaagttcttcctcaatcttgggaagatcctccttccgaaagccaagcttt 120
           |||| || |||||| ||||||||||||||||||||||||||||| || |  |||||||||
Sbjct: 678 atttccaattcaagctcttcctcaatcttgggaagatcctccttgcggattccaagcttt 619

                                                                       
Query: 121 ttgtttatcttgtcaaactctgccaagagaagacccatgttcttcctgtcattcctcata 180
           ||||||||||| ||||||||||||||||| |||||||| |||||| ||||| |||||| |
Sbjct: 618 ttgtttatcttctcaaactctgccaagaggagacccatattcttcttgtcactcctcaga 559

                                                                       
Query: 181 agaggcttcttaatctccttctcaattttctcgagagcttccatcatcatatcctcaata 240
           || |||||||||||||||||||||| |||||| || ||||||||||||||| |||||  |
Sbjct: 558 agtggcttcttaatctccttctcaactttctcaagggcttccatcatcatagcctcagca 499

                                                                       
Query: 241 cccatatcatctataagtccattctttttcctgagctgctgaagggtatccaagtacgtc 300
           ||||||||||||||||| ||| ||||| |||||| || |||||| |||| |||||| |||
Sbjct: 498 cccatatcatctataaggccactctttatcctgatctcctgaagagtattcaagtaagtc 439

                                                               
Query: 301 ctagcatcagggatgcccttcgtgaaagtctcaatagtatatttaattctct 352
           |  ||||||||||||||||| || || || || || ||||||||||| ||||
Sbjct: 438 cgtgcatcagggatgccctttgtaaaggtgtcgatggtatatttaatcctct 387
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>gb|AY103737.1| Zea mays PCO126068 mRNA sequence
          Length = 1045

 Score =  258 bits (130), Expect = 1e-65
 Identities = 295/350 (84%)
 Strand = Plus / Minus

                                                                       
Query: 9   ctccattgcttcaacaacttccttcttaagttccgtcagctcagctttggcaatttgcat 68
           ||||||||| ||||||  ||||||||||||||| |||||||||  ||||||||| | || 
Sbjct: 780 ctccattgcctcaacacattccttcttaagttcagtcagctcacttttggcaatctccaa 721

                                                                       
Query: 69  ttcaagttcttcctcaatcttgggaagatcctccttccgaaagccaagctttttgtttat 128
           ||||||||||| ||| ||||| ||||||||||||||||||| ||||||||||  ||| ||
Sbjct: 720 ttcaagttctttctcgatcttaggaagatcctccttccgaatgccaagctttgcgttaat 661

                                                                       
Query: 129 cttgtcaaactctgccaagagaagacccatgttcttcctgtcattcctcataagaggctt 188
           |||||||||||||||||  ||     ||||||||||| ||||| |||| | ||| || ||
Sbjct: 660 cttgtcaaactctgccataagggtggccatgttcttcttgtcactccttaaaagtggttt 601

                                                                       
Query: 189 cttaatctccttctcaattttctcgagagcttccatcatcatatcctcaatacccatatc 248
           |||||| ||||||||||| ||||| |||||||||||||||| |   || || || |||| 
Sbjct: 600 cttaatatccttctcaatcttctcaagagcttccatcatcaaaggttcgattccaatatg 541

                                                                       
Query: 249 atctataagtccattctttttcctgagctgctgaagggtatccaagtacgtcctagcatc 308
           ||||||||| ||| ||||| | |||||||| ||||| |||| |||||| ||||  |||||
Sbjct: 540 atctataagaccactctttattctgagctgttgaagagtattcaagtaagtccgtgcatc 481

                                                             
Query: 309 agggatgcccttcgtgaaagtctcaatagtatatttaattctctgagaat 358
           |||||||||||| ||||| |||||||| ||||||||||| || |||||||
Sbjct: 480 agggatgcccttggtgaaggtctcaatggtatatttaatcctttgagaat 431
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  176 bits (89), Expect = 3e-41
 Identities = 128/141 (90%)
 Strand = Plus / Minus

                                                                           
Query: 117     ctttttgtttatcttgtcaaactctgccaagagaagacccatgttcttcctgtcattcct 176
               ||||||||||||||| ||||||||||||||||| |||||||| |||||| ||||| ||||
Sbjct: 1640623 ctttttgtttatcttctcaaactctgccaagaggagacccatattcttcttgtcactcct 1640564

                                                                           
Query: 177     cataagaggcttcttaatctccttctcaattttctcgagagcttccatcatcatatcctc 236
               || ||| |||||||||||||||||||||| |||||| || ||||||||||||||| ||||
Sbjct: 1640563 cagaagtggcttcttaatctccttctcaactttctcaagggcttccatcatcatagcctc 1640504

                                    
Query: 237     aatacccatatcatctataag 257
               |  ||||||||||||||||||
Sbjct: 1640503 agcacccatatcatctataag 1640483



 Score =  135 bits (68), Expect = 1e-28
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                           
Query: 1       agttgaccctccattgcttcaacaacttccttcttaagttccgtcagctcagctttggca 60
               |||||| |||||||||||||||||  |||||||||||| ||||||||||||  |||||||
Sbjct: 1641213 agttgaacctccattgcttcaacacattccttcttaagctccgtcagctcacttttggca 1641154

                                                           
Query: 61      atttgcatttcaagttcttcctcaatcttgggaagatcctcctt 104
               |||| || |||||| |||||||||||||||||||||||||||||
Sbjct: 1641153 atttccaattcaagctcttcctcaatcttgggaagatcctcctt 1641110



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                           
Query: 264     ctttttcctgagctgctgaagggtatccaagtacgtcctagcatcagggatgcccttcgt 323
               |||| |||||| || |||||| |||| |||||| ||||  ||||||||||||||||| ||
Sbjct: 1640318 ctttatcctgatctcctgaagagtattcaagtaagtccgtgcatcagggatgccctttgt 1640259

                                            
Query: 324     gaaagtctcaatagtatatttaattctct 352
                || || || || ||||||||||| ||||
Sbjct: 1640258 aaaggtgtcgatggtatatttaatcctct 1640230



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 237     aatacccatatcatctataa 256
               ||||||||||||||||||||
Sbjct: 2086167 aatacccatatcatctataa 2086186
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>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1007_D04
          Length = 125503

 Score =  176 bits (89), Expect = 3e-41
 Identities = 128/141 (90%)
 Strand = Plus / Minus

                                                                         
Query: 117   ctttttgtttatcttgtcaaactctgccaagagaagacccatgttcttcctgtcattcct 176
             ||||||||||||||| ||||||||||||||||| |||||||| |||||| ||||| ||||
Sbjct: 77726 ctttttgtttatcttctcaaactctgccaagaggagacccatattcttcttgtcactcct 77667

                                                                         
Query: 177   cataagaggcttcttaatctccttctcaattttctcgagagcttccatcatcatatcctc 236
             || ||| |||||||||||||||||||||| |||||| || ||||||||||||||| ||||
Sbjct: 77666 cagaagtggcttcttaatctccttctcaactttctcaagggcttccatcatcatagcctc 77607

                                  
Query: 237   aatacccatatcatctataag 257
             |  ||||||||||||||||||
Sbjct: 77606 agcacccatatcatctataag 77586



 Score =  135 bits (68), Expect = 1e-28
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                         
Query: 1     agttgaccctccattgcttcaacaacttccttcttaagttccgtcagctcagctttggca 60
             |||||| |||||||||||||||||  |||||||||||| ||||||||||||  |||||||
Sbjct: 78316 agttgaacctccattgcttcaacacattccttcttaagctccgtcagctcacttttggca 78257

                                                         
Query: 61    atttgcatttcaagttcttcctcaatcttgggaagatcctcctt 104
             |||| || |||||| |||||||||||||||||||||||||||||
Sbjct: 78256 atttccaattcaagctcttcctcaatcttgggaagatcctcctt 78213



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                         
Query: 264   ctttttcctgagctgctgaagggtatccaagtacgtcctagcatcagggatgcccttcgt 323
             |||| |||||| || |||||| |||| |||||| ||||  ||||||||||||||||| ||
Sbjct: 77421 ctttatcctgatctcctgaagagtattcaagtaagtccgtgcatcagggatgccctttgt 77362

                                          
Query: 324   gaaagtctcaatagtatatttaattctct 352
              || || || || ||||||||||| ||||
Sbjct: 77361 aaaggtgtcgatggtatatttaatcctct 77333
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>emb|X74296.1|GMATPSYNS G.max gene for ATP synthase subunit
          Length = 2375

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 127  atcttgtcaaactctgccaagagaag 152
            ||||| ||||||||||||||||||||
Sbjct: 2066 atcttatcaaactctgccaagagaag 2041
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>gb|AC068913.22| Mus musculus strain 129/Sv clone ct7-362c13 map 2, complete sequence
          Length = 163615

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 229   atatcctcaatacccatatca 249
             |||||||||||||||||||||
Sbjct: 59403 atatcctcaatacccatatca 59383
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>gb|AC025366.11| Homo sapiens chromosome 8, clone RP11-238I10, complete sequence
          Length = 157390

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 253  ataagtccattctttttcctg 273
            |||||||||||||||||||||
Sbjct: 1139 ataagtccattctttttcctg 1159
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>gb|AC068911.38| Mus musculus strain 129/Sv chromosome 2 clone ct7-161k20, complete
              sequence
          Length = 158450

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 229    atatcctcaatacccatatca 249
              |||||||||||||||||||||
Sbjct: 144617 atatcctcaatacccatatca 144637
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>gb|AC112719.4| Homo sapiens BAC clone RP11-630D6 from 4, complete sequence
          Length = 167284

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 182   gaggcttcttaatctccttctcaat 206
             ||||||||||| |||||||||||||
Sbjct: 86156 gaggcttcttattctccttctcaat 86180
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>gb|AC093599.6| Homo sapiens BAC clone RP11-285C1 from 4, complete sequence
          Length = 187937

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 143   ccaagagaagacccatgttcttcctgtcattcc 175
             |||| ||||||||||||  ||||||||||||||
Sbjct: 22885 ccaacagaagacccatgggcttcctgtcattcc 22853
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>gb|AC155940.6| Mus musculus 10 BAC RP24-94O5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 211515

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 324    gaaagtctcaatagtatatttaatt 348
              ||||||||||||| |||||||||||
Sbjct: 109303 gaaagtctcaataatatatttaatt 109327
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>emb|BX908734.3| Mouse DNA sequence from clone RP23-266F3 on chromosome 2, complete
            sequence
          Length = 27806

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 229  atatcctcaatacccatatca 249
            |||||||||||||||||||||
Sbjct: 4532 atatcctcaatacccatatca 4552
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>gb|AC090819.7| Homo sapiens chromosome 8, clone CTD-2544L4, complete sequence
          Length = 208961

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 253    ataagtccattctttttcctg 273
              |||||||||||||||||||||
Sbjct: 159256 ataagtccattctttttcctg 159276
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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 248    catctataagtccattctttt 268
              |||||||||||||||||||||
Sbjct: 149222 catctataagtccattctttt 149242
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>emb|AL844146.2| Mouse DNA sequence from clone RP24-89J1 on chromosome 2, complete
              sequence
          Length = 233417

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 229    atatcctcaatacccatatca 249
              |||||||||||||||||||||
Sbjct: 164443 atatcctcaatacccatatca 164423
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>emb|AL845273.7| Mouse DNA sequence from clone RP23-334D15 on chromosome 2, complete
             sequence
          Length = 158861

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 155   ccatgttcttcctgtcattcc 175
             |||||||||||||||||||||
Sbjct: 30672 ccatgttcttcctgtcattcc 30652
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>dbj|AP003547.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1399D2
          Length = 169660

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 253    ataagtccattctttttcctg 273
              |||||||||||||||||||||
Sbjct: 164498 ataagtccattctttttcctg 164518
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>dbj|AP003693.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1762B7, complete
             sequence
          Length = 150581

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 253   ataagtccattctttttcctg 273
             |||||||||||||||||||||
Sbjct: 65133 ataagtccattctttttcctg 65153
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>gb|AC068140.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-246M15, complete
             sequence
          Length = 113092

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   taagtccattctttttcctg 273
             ||||||||||||||||||||
Sbjct: 41481 taagtccattctttttcctg 41500
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>ref|XM_748618.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g09280) partial
            mRNA
          Length = 1497

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   tgcttcaacaacttccttct 34
            ||||||||||||||||||||
Sbjct: 1467 tgcttcaacaacttccttct 1448
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>emb|Z68012.1|CET24D5 Caenorhabditis elegans Cosmid T24D5, complete sequence
          Length = 37666

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 18   ttcaacaacttccttcttaagttc 41
            |||||||||||| |||||||||||
Sbjct: 9785 ttcaacaacttctttcttaagttc 9808
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>gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete sequence
          Length = 132702

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   gtccattctttttcctgagc 276
             ||||||||||||||||||||
Sbjct: 84312 gtccattctttttcctgagc 84331
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>emb|AL590308.8| Human DNA sequence from clone RP11-501K14 on chromosome 6 Contains the
             5' end of the REPS1 gene for RALBP1 associated Eps domain
             containing 1, the gene for hypothetical protein PRO2013
             and two CpG islands, complete sequence
          Length = 100296

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   actctgccaagagaagaccc 156
             ||||||||||||||||||||
Sbjct: 30932 actctgccaagagaagaccc 30951
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>emb|AL445470.5| Human DNA sequence from clone RP11-421L10 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 86332

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    aatttgcatttcaagttctt 79
             ||||||||||||||||||||
Sbjct: 69084 aatttgcatttcaagttctt 69103
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>emb|AL136090.12| Human DNA sequence from clone RP11-97N19 on chromosome 20 Contains the
             5' end of the SLC24A3 gene for solute carrier family 24
             (sodium/potassium/calcium exchanger) member 3, a novel
             gene and a CpG island, complete sequence
          Length = 185473

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   atctccttctcaattttctc 212
             ||||||||||||||||||||
Sbjct: 31034 atctccttctcaattttctc 31053
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>gb|AY046926.1| Lactococcus lactis subsp. cremoris YdjD (ydjD), Nox (nox), and Ssb
            (ssb) genes, complete cds; and GroES (groES) gene,
            partial cds
          Length = 3172

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  ccaagctttttgtttatctt 131
            ||||||||||||||||||||
Sbjct: 2093 ccaagctttttgtttatctt 2074
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>dbj|AK128488.1| Homo sapiens cDNA FLJ46636 fis, clone TRACH3002188
          Length = 4492

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   aatttgcatttcaagttctt 79
            ||||||||||||||||||||
Sbjct: 1755 aatttgcatttcaagttctt 1736
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>gb|AC104664.2| Homo sapiens BAC clone RP11-724H6 from 4, complete sequence
          Length = 158145

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 128    tcttgtcaaactctgccaagagaa 151
              |||||||| |||||||||||||||
Sbjct: 111366 tcttgtcagactctgccaagagaa 111343
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>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence
          Length = 166104

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    agctttggcaatttgcattt 70
             ||||||||||||||||||||
Sbjct: 62736 agctttggcaatttgcattt 62755
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>gb|AC074395.1|AC074395 Arabidopsis thaliana chromosome 3 BAC T8G24 genomic sequence, complete
             sequence
          Length = 29605

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 244   atatcatctataagtccattctttttcc 271
             ||||||||| |||| |||||||||||||
Sbjct: 23586 atatcatctctaaggccattctttttcc 23613
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>ref|NM_001010913.2| Homo sapiens chromosome 1 open reading frame 140 (C1orf140), mRNA
          Length = 4492

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   aatttgcatttcaagttctt 79
            ||||||||||||||||||||
Sbjct: 1755 aatttgcatttcaagttctt 1736
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>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0026E05
          Length = 159860

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    aatacccatatcatctataa 256
              ||||||||||||||||||||
Sbjct: 136375 aatacccatatcatctataa 136394
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>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1679_B08
          Length = 142529

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 237 aatacccatatcatctataa 256
           ||||||||||||||||||||
Sbjct: 860 aatacccatatcatctataa 879
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>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence
          Length = 214859

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 115    agctttttgtttatcttgtcaaac 138
              ||||||| ||||||||||||||||
Sbjct: 155144 agcttttagtttatcttgtcaaac 155121
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>emb|AJ575922.1|MSU575922 Monomorium subopacum satellite DNA, clone MOSU-E-2.26
          Length = 2530

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  ttcttcctgtcattcctcat 179
            ||||||||||||||||||||
Sbjct: 2039 ttcttcctgtcattcctcat 2020
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>emb|AJ575920.1|MSU575920 Monomorium subopacum satellite DNA, clone MOSU-E-2.1
          Length = 2472

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  ttcttcctgtcattcctcat 179
            ||||||||||||||||||||
Sbjct: 1983 ttcttcctgtcattcctcat 1964
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>emb|AJ575919.1|MSU575919 Monomorium subopacum satellite DNA, clone MOSU-E-1.2
          Length = 2476

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  ttcttcctgtcattcctcat 179
            ||||||||||||||||||||
Sbjct: 1988 ttcttcctgtcattcctcat 1969
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>emb|AJ012585.1|TTH012585 Tetrahymena thermophila macronuclear gene encoding ribosomal protein
            L3, exons 1-2
          Length = 4634

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   gcttcaacaacttccttctt 35
            ||||||||||||||||||||
Sbjct: 1774 gcttcaacaacttccttctt 1755


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,132,510
Number of Sequences: 3902068
Number of extensions: 4132510
Number of successful extensions: 80412
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80294
Number of HSP's gapped (non-prelim): 117
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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